Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.63219 * 2 1 4 4 C 1.52898 * 109.63115 * 120.59771 * 2 1 3 5 5 C 1.50727 * 109.96351 * 170.05271 * 4 2 1 6 6 C 1.38642 * 118.46527 * 163.30736 * 5 4 2 7 7 C 1.38255 * 120.33218 * 179.86628 * 6 5 4 8 8 F 1.35101 * 120.11251 * 179.97438 * 7 6 5 9 9 C 1.38487 * 119.77398 * 359.96741 * 7 6 5 10 10 C 1.37972 * 119.83602 * 0.06801 * 9 7 6 11 11 C 1.37850 * 121.66209 * 343.25572 * 5 4 2 12 12 C 1.50627 * 121.84247 * 0.25480 * 11 5 4 13 13 H 1.09001 * 109.13859 * 222.34873 * 12 11 5 14 14 C 1.53002 * 109.29609 * 102.86961 * 12 11 5 15 15 N 1.46631 * 110.48928 * 342.55954 * 12 11 5 16 16 C 1.46902 * 110.99748 * 175.95692 * 15 12 11 17 17 C 1.53005 * 109.47483 * 64.33469 * 16 15 12 18 18 C 1.50696 * 109.47521 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99911 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99977 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00152 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99683 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47307 * 60.00282 * 22 20 18 24 24 H 1.48497 * 109.46793 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47006 * 299.99951 * 22 20 18 26 26 H 1.09002 * 109.47413 * 173.46422 * 1 2 3 27 27 H 1.08997 * 109.47562 * 293.46722 * 1 2 3 28 28 H 1.08997 * 109.47245 * 53.46365 * 1 2 3 29 29 H 1.09003 * 109.38817 * 290.19978 * 4 2 1 30 30 H 1.08994 * 109.39086 * 49.90020 * 4 2 1 31 31 H 1.08001 * 119.83446 * 359.84790 * 6 5 4 32 32 H 1.07995 * 120.08013 * 180.08616 * 9 7 6 33 33 H 1.08006 * 119.78606 * 180.02562 * 10 9 7 34 34 H 1.08994 * 109.47480 * 298.95743 * 14 12 11 35 35 H 1.09005 * 109.46992 * 178.96267 * 14 12 11 36 36 H 1.09002 * 109.47404 * 58.96612 * 14 12 11 37 37 H 1.08999 * 109.47529 * 184.33575 * 16 15 12 38 38 H 1.09005 * 109.47496 * 304.33618 * 16 15 12 39 39 H 1.08999 * 109.46824 * 300.00537 * 17 16 15 40 40 H 1.09005 * 109.46633 * 59.99621 * 17 16 15 41 41 H 0.96992 * 120.00064 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0436 -0.7330 1.2396 5 6 3.5308 -0.9518 1.1287 6 6 4.2387 -1.2744 2.2763 7 6 5.6037 -1.4861 2.2184 8 9 6.2891 -1.7998 3.3395 9 6 6.2659 -1.3755 1.0072 10 6 5.5605 -1.0536 -0.1340 11 6 4.1909 -0.8395 -0.0763 12 6 3.4668 -0.4868 -1.3492 13 1 3.8402 -1.1143 -2.1584 14 6 3.7262 0.9826 -1.6879 15 7 2.0244 -0.7014 -1.1955 16 6 1.2972 -0.2706 -2.3970 17 6 1.7082 -1.1455 -3.5831 18 6 0.9617 -0.7040 -4.8155 19 1 0.2636 0.1181 -4.7584 20 6 1.1699 -1.3496 -6.0158 21 7 2.0197 -2.3510 -6.0852 22 14 0.2451 -0.8018 -7.5436 23 1 0.5715 0.6167 -7.8379 24 1 0.6440 -1.6510 -8.6947 25 1 -1.2157 -0.9361 -7.3127 26 1 -0.3634 -1.0210 -0.1170 27 1 -0.3634 0.4092 0.9426 28 1 -0.3633 0.6118 -0.8257 29 1 1.8308 -0.1366 2.1268 30 1 1.5415 -1.6967 1.3242 31 1 3.7212 -1.3606 3.2204 32 1 7.3319 -1.5411 0.9560 33 1 6.0777 -0.9680 -1.0783 34 1 3.3470 1.6132 -0.8839 35 1 3.2184 1.2360 -2.6186 36 1 4.7978 1.1453 -1.8028 37 1 0.2249 -0.3688 -2.2275 38 1 1.5370 0.7705 -2.6132 39 1 2.7804 -1.0474 -3.7526 40 1 1.4683 -2.1866 -3.3668 41 1 2.1659 -2.8054 -6.9295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354825654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = -41.874949 kcal Electronic energy + Delta-G solvation = -21797.697587 eV Core-core repulsion = 18590.636200 eV Total energy + Delta-G solvation = -3207.061386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.87481 -41.51617 -38.76645 -35.56912 -34.76489 -33.25439 -32.03581 -30.43584 -29.01253 -27.64868 -26.43022 -24.50490 -23.29072 -22.80769 -21.96738 -19.61329 -18.59572 -18.15380 -17.60497 -17.34794 -16.60749 -16.51886 -16.06057 -15.76676 -15.58616 -15.03313 -14.62832 -14.44242 -14.27919 -14.14953 -14.02024 -13.59528 -13.42356 -13.24642 -12.97238 -12.79967 -12.67487 -12.63089 -12.39471 -12.32611 -12.05318 -11.80307 -11.56531 -11.47119 -11.12233 -11.11014 -10.49853 -9.85689 -9.48382 -9.03576 -8.17062 -6.27904 0.16558 0.26570 1.41461 1.44091 1.51853 2.41912 2.56800 3.03725 3.16623 3.24190 3.61464 3.69129 3.90207 4.05703 4.11734 4.19483 4.32907 4.33985 4.39090 4.53917 4.56355 4.60874 4.72945 4.78841 4.86883 4.94176 4.96740 5.01096 5.07583 5.13396 5.14277 5.19865 5.29856 5.32041 5.43075 5.52352 5.57357 5.73932 5.85330 5.94497 6.16873 6.36049 6.39752 6.89780 7.41175 8.94701 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.004274 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.358754 B = 6549.357581 C = 7217.518785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 H 0.049 0.951 4 C -0.066 4.066 5 C -0.047 4.047 6 C -0.154 4.154 7 C 0.080 3.920 8 F -0.146 7.146 9 C -0.156 4.156 10 C -0.091 4.091 11 C -0.086 4.086 12 C 0.120 3.880 13 H 0.070 0.930 14 C -0.173 4.173 15 N -0.535 5.535 16 C 0.072 3.928 17 C 0.038 3.962 18 C -0.542 4.542 19 H 0.060 0.940 20 C 0.004 3.996 21 N -0.932 5.932 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.267 1.267 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.140 0.860 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.030 0.970 39 H -0.006 1.006 40 H -0.013 1.013 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.837 5.714 17.099 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.103 4.103 5 C -0.047 4.047 6 C -0.172 4.172 7 C 0.061 3.939 8 F -0.125 7.125 9 C -0.174 4.174 10 C -0.110 4.110 11 C -0.087 4.087 12 C 0.011 3.989 13 H 0.088 0.912 14 C -0.231 4.231 15 N -0.259 5.259 16 C -0.055 4.055 17 C 0.001 3.999 18 C -0.580 4.580 19 H 0.078 0.922 20 C -0.194 4.194 21 N -0.572 5.572 22 Si 0.786 3.214 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.192 1.192 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.105 0.895 31 H 0.172 0.828 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.012 0.988 40 H 0.005 0.995 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.830 5.069 17.098 18.240 hybrid contribution 0.155 0.563 -1.203 1.337 sum 3.984 5.632 15.895 17.328 Atomic orbital electron populations 1.21906 0.93184 1.02367 1.02711 1.21819 0.96252 0.95730 0.90081 0.93302 1.20659 0.89676 1.02070 0.97942 1.19617 0.96717 0.97062 0.91343 1.21204 0.92268 1.03582 1.00162 1.17757 0.90668 1.02741 0.82695 1.91471 1.79849 1.90702 1.50461 1.21208 1.01807 1.03463 0.90945 1.21087 0.93124 0.97833 0.98939 1.19754 0.94086 1.00604 0.94249 1.20393 0.88354 0.95823 0.94319 0.91230 1.22345 1.02803 0.96367 1.01593 1.62600 1.02441 1.57307 1.03539 1.22145 0.97939 0.96615 0.88816 1.18894 0.95005 0.94129 0.91897 1.21594 1.24682 1.16823 0.94904 0.92167 1.25908 0.96153 0.94924 1.02444 1.70102 1.36787 1.23287 1.26987 0.85555 0.79158 0.78428 0.78226 1.19165 1.21042 1.19189 0.92537 0.89529 0.92962 0.87497 0.89541 0.82822 0.82943 0.84210 0.91640 0.92871 0.90978 0.90874 0.95232 0.98813 0.99487 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.14 71.98 0.59 -2.86 16 2 C 0.07 1.84 2.48 44.83 0.11 1.95 16 3 H 0.05 1.28 6.05 -2.39 -0.01 1.27 16 4 C -0.07 -1.48 5.25 29.82 0.16 -1.33 16 5 C -0.05 -1.19 5.77 -19.85 -0.11 -1.31 16 6 C -0.15 -3.45 9.64 22.37 0.22 -3.24 16 7 C 0.08 1.91 7.30 22.33 0.16 2.07 16 8 F -0.15 -3.48 17.27 44.97 0.78 -2.70 16 9 C -0.16 -3.55 10.03 22.27 0.22 -3.33 16 10 C -0.09 -2.33 9.52 22.33 0.21 -2.12 16 11 C -0.09 -2.48 5.07 -19.86 -0.10 -2.58 16 12 C 0.12 4.02 2.26 44.20 0.10 4.12 16 13 H 0.07 2.79 6.59 -2.39 -0.02 2.77 16 14 C -0.17 -5.21 8.40 71.98 0.60 -4.61 16 15 N -0.53 -18.72 4.55 -850.60 -3.87 -22.60 16 16 C 0.07 2.94 3.96 86.30 0.34 3.28 16 17 C 0.04 2.01 4.85 29.85 0.14 2.16 16 18 C -0.54 -30.53 9.11 25.60 0.23 -30.29 16 19 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 20 C 0.00 0.21 5.46 84.65 0.46 0.67 16 21 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 22 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.34 6.67 -2.39 -0.02 1.33 16 29 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.98 8.11 -2.39 -0.02 1.96 16 31 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 34 H 0.06 1.78 6.33 -2.39 -0.02 1.76 16 35 H 0.05 1.84 6.22 -2.38 -0.01 1.82 16 36 H 0.07 1.92 8.07 -2.39 -0.02 1.91 16 37 H 0.07 2.92 5.90 -2.39 -0.01 2.91 16 38 H 0.03 1.19 5.96 -2.38 -0.01 1.18 16 39 H -0.01 -0.36 6.59 -2.39 -0.02 -0.38 16 40 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 41 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -64.39 322.49 3.57 -60.81 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.02 Total: 12.41 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: 3.34 Total: -37.40 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -3.59 Total: -79.11 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -64.39 3.57 -60.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354825654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.939 kcal (2) G-P(sol) polarization free energy of solvation -64.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds