Wall clock time and date at job start Mon Mar 30 2020 01:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.78674 * 2 1 4 4 C 1.52890 * 109.63005 * 239.50704 * 2 1 3 5 5 C 1.50721 * 109.96437 * 189.91786 * 4 2 1 6 6 C 1.38646 * 118.46956 * 196.85314 * 5 4 2 7 7 C 1.38254 * 120.33169 * 180.18137 * 6 5 4 8 8 F 1.35101 * 120.11137 * 180.02562 * 7 6 5 9 9 C 1.38485 * 119.77709 * 0.02562 * 7 6 5 10 10 C 1.37976 * 119.83530 * 359.92795 * 9 7 6 11 11 C 1.37854 * 121.66188 * 16.91899 * 5 4 2 12 12 C 1.50634 * 121.83426 * 359.47606 * 11 5 4 13 13 H 1.08999 * 109.29298 * 137.93660 * 12 11 5 14 14 C 1.52998 * 109.30969 * 257.31411 * 12 11 5 15 15 N 1.46633 * 110.48644 * 17.63195 * 12 11 5 16 16 C 1.46896 * 111.00284 * 70.82432 * 15 12 11 17 17 C 1.53007 * 109.46898 * 53.30342 * 16 15 12 18 18 C 1.50700 * 109.46819 * 174.40581 * 17 16 15 19 19 H 1.08003 * 120.00132 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99811 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00376 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00009 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47259 * 89.99822 * 22 20 18 24 24 H 1.48498 * 109.47361 * 209.99986 * 22 20 18 25 25 H 1.48497 * 109.47173 * 330.00067 * 22 20 18 26 26 H 1.08994 * 109.46973 * 299.50893 * 1 2 3 27 27 H 1.08995 * 109.46762 * 59.50688 * 1 2 3 28 28 H 1.09000 * 109.46727 * 179.50800 * 1 2 3 29 29 H 1.09001 * 109.38767 * 310.06700 * 4 2 1 30 30 H 1.09002 * 109.38967 * 69.86310 * 4 2 1 31 31 H 1.08007 * 119.83134 * 0.15991 * 6 5 4 32 32 H 1.07997 * 120.08039 * 179.97438 * 9 7 6 33 33 H 1.08000 * 119.79002 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.47385 * 181.03831 * 14 12 11 35 35 H 1.09001 * 109.47133 * 301.04206 * 14 12 11 36 36 H 1.09003 * 109.47143 * 61.04177 * 14 12 11 37 37 H 1.08996 * 109.47226 * 173.30313 * 16 15 12 38 38 H 1.08998 * 109.47184 * 293.30599 * 16 15 12 39 39 H 1.08995 * 109.46948 * 294.41079 * 17 16 15 40 40 H 1.09001 * 109.46350 * 54.41264 * 17 16 15 41 41 H 0.96996 * 120.00211 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8991 1.0257 0.0000 4 6 2.0437 -0.7307 -1.2409 5 6 3.5310 -0.9490 -1.1308 6 6 4.2392 -1.2662 -2.2797 7 6 5.6042 -1.4782 -2.2222 8 9 6.2901 -1.7866 -3.3446 9 6 6.2661 -1.3734 -1.0103 10 6 5.5602 -1.0568 0.1322 11 6 4.1907 -0.8420 0.0749 12 6 3.4670 -0.4898 1.3481 13 1 3.8394 -1.1157 2.1590 14 6 3.7273 0.9790 1.6884 15 7 2.0245 -0.7034 1.1944 16 6 1.7083 -2.1365 1.1299 17 6 2.3170 -2.8479 2.3401 18 6 1.8788 -4.2898 2.3478 19 1 1.2314 -4.6617 1.5674 20 6 2.3045 -5.1343 3.3511 21 7 1.9226 -6.3927 3.3577 22 14 3.4237 -4.4909 4.7013 23 1 2.5994 -3.9762 5.8242 24 1 4.2935 -5.5910 5.1894 25 1 4.2678 -3.3939 4.1636 26 1 -0.3633 0.5062 0.8943 27 1 -0.3633 0.5215 -0.8855 28 1 -0.3633 -1.0276 -0.0088 29 1 1.5419 -1.6945 -1.3269 30 1 1.8319 -0.1322 -2.1269 31 1 3.7220 -1.3485 -3.2242 32 1 7.3322 -1.5385 -0.9597 33 1 6.0771 -0.9757 1.0770 34 1 3.2197 1.2318 2.6193 35 1 4.7991 1.1409 1.8033 36 1 3.3485 1.6107 0.8849 37 1 0.6267 -2.2706 1.1357 38 1 2.1220 -2.5589 0.2142 39 1 3.4042 -2.7988 2.2814 40 1 1.9799 -2.3609 3.2551 41 1 2.2217 -6.9867 4.0638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354825660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:28 Heat of formation + Delta-G solvation = -23.000851 kcal Electronic energy + Delta-G solvation = -22292.763885 eV Core-core repulsion = 19086.520941 eV Total energy + Delta-G solvation = -3206.242944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.83749 -40.68661 -37.39497 -33.91177 -33.22528 -31.61407 -31.04331 -29.44486 -28.13575 -26.50349 -24.45881 -23.09341 -22.15986 -21.68006 -20.84886 -18.17432 -17.24236 -16.77013 -16.43997 -15.94658 -15.57109 -15.02749 -14.83376 -14.45541 -14.17266 -13.96416 -13.64689 -13.29949 -13.00829 -12.73578 -12.61349 -12.55138 -12.22333 -11.93349 -11.71096 -11.55396 -11.45274 -11.25349 -11.08415 -10.86295 -10.60432 -10.39799 -10.09369 -9.73371 -9.70266 -9.15777 -8.84133 -8.53724 -8.37113 -7.90194 -6.04536 -4.02382 1.21631 1.26379 3.30849 3.37944 3.40258 3.59703 4.17684 4.30785 4.44849 4.64500 4.78967 4.86695 5.04423 5.09376 5.23993 5.29140 5.34034 5.43701 5.51593 5.59197 5.67539 5.72404 5.83061 5.89625 5.93968 6.04645 6.10160 6.16368 6.17259 6.23096 6.29892 6.34569 6.36736 6.43282 6.63525 6.78478 6.96302 7.13922 7.30461 7.54536 7.60817 7.83817 8.52941 8.99631 9.57838 11.08975 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.006484 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.279418 B = 4317.509035 C = 5061.003771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.075 3.925 3 H 0.083 0.917 4 C -0.116 4.116 5 C -0.043 4.043 6 C -0.154 4.154 7 C 0.091 3.909 8 F -0.145 7.145 9 C -0.157 4.157 10 C -0.082 4.082 11 C -0.103 4.103 12 C 0.108 3.892 13 H 0.106 0.894 14 C -0.136 4.136 15 N -0.519 5.519 16 C 0.062 3.938 17 C -0.010 4.010 18 C -0.518 4.518 19 H 0.070 0.930 20 C 0.068 3.932 21 N -0.903 5.903 22 Si 0.880 3.120 23 H -0.276 1.276 24 H -0.289 1.289 25 H -0.266 1.266 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.014 0.986 40 H 0.021 0.979 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 15.614 -8.529 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.034 4.034 3 H 0.101 0.899 4 C -0.154 4.154 5 C -0.044 4.044 6 C -0.173 4.173 7 C 0.072 3.928 8 F -0.124 7.124 9 C -0.176 4.176 10 C -0.100 4.100 11 C -0.104 4.104 12 C -0.001 4.001 13 H 0.124 0.876 14 C -0.194 4.194 15 N -0.241 5.241 16 C -0.065 4.065 17 C -0.048 4.048 18 C -0.557 4.557 19 H 0.088 0.912 20 C -0.133 4.133 21 N -0.542 5.542 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.191 1.191 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.039 0.961 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.173 15.632 -8.037 18.066 hybrid contribution 1.259 -0.461 -0.308 1.375 sum 5.431 15.171 -8.345 18.146 Atomic orbital electron populations 1.21787 0.93933 1.02600 1.01563 1.21780 0.95843 0.97971 0.87765 0.89921 1.21236 0.91130 1.02674 1.00390 1.19394 0.95806 0.97462 0.91712 1.21005 0.92397 1.04271 0.99645 1.17572 0.90251 1.02435 0.82549 1.91472 1.79766 1.90779 1.50336 1.21032 1.00802 1.04165 0.91572 1.20959 0.93542 0.97618 0.97923 1.20497 0.94268 0.99498 0.96180 1.20804 0.87810 0.97627 0.93833 0.87620 1.21850 1.00983 0.94530 1.02004 1.62821 1.11479 1.13203 1.36596 1.22247 1.00833 0.84003 0.99373 1.19639 0.95605 0.95894 0.93623 1.21045 1.30781 0.92561 1.11272 0.91166 1.24990 0.95904 0.94691 0.97746 1.69909 1.45646 1.04734 1.33961 0.86777 0.81278 0.78662 0.82546 1.20198 1.21503 1.19086 0.91688 0.92743 0.92054 0.89341 0.90470 0.85148 0.85007 0.85093 0.91374 0.92527 0.92793 0.90935 0.94881 0.96741 0.96118 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.15 37.16 0.34 -1.35 16 2 C 0.08 0.99 2.69 -67.62 -0.18 0.81 16 3 H 0.08 1.01 6.05 -51.93 -0.31 0.69 16 4 C -0.12 -1.51 4.46 -27.93 -0.12 -1.63 16 5 C -0.04 -0.63 5.08 -104.60 -0.53 -1.16 16 6 C -0.15 -2.15 9.63 -39.42 -0.38 -2.53 16 7 C 0.09 1.30 7.30 -39.48 -0.29 1.01 16 8 F -0.14 -2.08 17.27 2.25 0.04 -2.04 16 9 C -0.16 -2.11 10.03 -39.59 -0.40 -2.51 16 10 C -0.08 -1.14 9.52 -39.49 -0.38 -1.51 16 11 C -0.10 -1.54 4.63 -104.61 -0.48 -2.02 16 12 C 0.11 1.65 2.16 -69.04 -0.15 1.50 16 13 H 0.11 1.83 5.71 -51.93 -0.30 1.54 16 14 C -0.14 -1.66 9.09 37.16 0.34 -1.32 16 15 N -0.52 -8.38 4.59 -220.21 -1.01 -9.39 16 16 C 0.06 1.21 4.04 -3.82 -0.02 1.20 16 17 C -0.01 -0.24 3.41 -27.88 -0.09 -0.33 16 18 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 19 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 22 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.80 6.70 -51.93 -0.35 0.46 16 29 H 0.09 1.25 6.74 -51.93 -0.35 0.90 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 36 H 0.05 0.62 6.33 -51.93 -0.33 0.29 16 37 H 0.07 1.44 6.71 -51.93 -0.35 1.10 16 38 H 0.03 0.67 5.42 -51.93 -0.28 0.39 16 39 H 0.01 0.34 5.50 -51.93 -0.29 0.06 16 40 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 318.20 15.07 4.80 4.80 Total: -1.00 -30.50 318.20 -8.76 -39.26 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.91 Total: 0.47 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -2.78 Total: -23.00 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.24 Total: -36.53 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.50 -8.76 -39.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354825660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.261 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds