Wall clock time and date at job start Mon Mar 30 2020 01:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.78674 * 2 1 4 4 C 1.52890 * 109.63005 * 239.50704 * 2 1 3 5 5 C 1.50721 * 109.96437 * 189.91786 * 4 2 1 6 6 C 1.38646 * 118.46956 * 196.85314 * 5 4 2 7 7 C 1.38254 * 120.33169 * 180.18137 * 6 5 4 8 8 F 1.35101 * 120.11137 * 180.02562 * 7 6 5 9 9 C 1.38485 * 119.77709 * 0.02562 * 7 6 5 10 10 C 1.37976 * 119.83530 * 359.92795 * 9 7 6 11 11 C 1.37854 * 121.66188 * 16.91899 * 5 4 2 12 12 C 1.50634 * 121.83426 * 359.47606 * 11 5 4 13 13 H 1.08999 * 109.29298 * 137.93660 * 12 11 5 14 14 C 1.52998 * 109.30969 * 257.31411 * 12 11 5 15 15 N 1.46633 * 110.48644 * 17.63195 * 12 11 5 16 16 C 1.46896 * 111.00284 * 70.82432 * 15 12 11 17 17 C 1.53007 * 109.46898 * 53.30342 * 16 15 12 18 18 C 1.50700 * 109.46819 * 174.40581 * 17 16 15 19 19 H 1.08003 * 120.00132 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99811 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00376 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00009 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47259 * 89.99822 * 22 20 18 24 24 H 1.48498 * 109.47361 * 209.99986 * 22 20 18 25 25 H 1.48497 * 109.47173 * 330.00067 * 22 20 18 26 26 H 1.08994 * 109.46973 * 299.50893 * 1 2 3 27 27 H 1.08995 * 109.46762 * 59.50688 * 1 2 3 28 28 H 1.09000 * 109.46727 * 179.50800 * 1 2 3 29 29 H 1.09001 * 109.38767 * 310.06700 * 4 2 1 30 30 H 1.09002 * 109.38967 * 69.86310 * 4 2 1 31 31 H 1.08007 * 119.83134 * 0.15991 * 6 5 4 32 32 H 1.07997 * 120.08039 * 179.97438 * 9 7 6 33 33 H 1.08000 * 119.79002 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.47385 * 181.03831 * 14 12 11 35 35 H 1.09001 * 109.47133 * 301.04206 * 14 12 11 36 36 H 1.09003 * 109.47143 * 61.04177 * 14 12 11 37 37 H 1.08996 * 109.47226 * 173.30313 * 16 15 12 38 38 H 1.08998 * 109.47184 * 293.30599 * 16 15 12 39 39 H 1.08995 * 109.46948 * 294.41079 * 17 16 15 40 40 H 1.09001 * 109.46350 * 54.41264 * 17 16 15 41 41 H 0.96996 * 120.00211 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8991 1.0257 0.0000 4 6 2.0437 -0.7307 -1.2409 5 6 3.5310 -0.9490 -1.1308 6 6 4.2392 -1.2662 -2.2797 7 6 5.6042 -1.4782 -2.2222 8 9 6.2901 -1.7866 -3.3446 9 6 6.2661 -1.3734 -1.0103 10 6 5.5602 -1.0568 0.1322 11 6 4.1907 -0.8420 0.0749 12 6 3.4670 -0.4898 1.3481 13 1 3.8394 -1.1157 2.1590 14 6 3.7273 0.9790 1.6884 15 7 2.0245 -0.7034 1.1944 16 6 1.7083 -2.1365 1.1299 17 6 2.3170 -2.8479 2.3401 18 6 1.8788 -4.2898 2.3478 19 1 1.2314 -4.6617 1.5674 20 6 2.3045 -5.1343 3.3511 21 7 1.9226 -6.3927 3.3577 22 14 3.4237 -4.4909 4.7013 23 1 2.5994 -3.9762 5.8242 24 1 4.2935 -5.5910 5.1894 25 1 4.2678 -3.3939 4.1636 26 1 -0.3633 0.5062 0.8943 27 1 -0.3633 0.5215 -0.8855 28 1 -0.3633 -1.0276 -0.0088 29 1 1.5419 -1.6945 -1.3269 30 1 1.8319 -0.1322 -2.1269 31 1 3.7220 -1.3485 -3.2242 32 1 7.3322 -1.5385 -0.9597 33 1 6.0771 -0.9757 1.0770 34 1 3.2197 1.2318 2.6193 35 1 4.7991 1.1409 1.8033 36 1 3.3485 1.6107 0.8849 37 1 0.6267 -2.2706 1.1357 38 1 2.1220 -2.5589 0.2142 39 1 3.4042 -2.7988 2.2814 40 1 1.9799 -2.3609 3.2551 41 1 2.2217 -6.9867 4.0638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354825660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:28 Heat of formation + Delta-G solvation = -40.565294 kcal Electronic energy + Delta-G solvation = -22293.525536 eV Core-core repulsion = 19086.520941 eV Total energy + Delta-G solvation = -3207.004595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.93455 -41.82343 -38.54975 -35.47221 -34.74969 -33.20337 -32.29891 -30.63747 -29.52027 -27.52342 -26.17432 -24.25542 -23.25650 -22.79338 -22.54230 -19.46721 -18.91228 -18.21349 -17.57081 -17.19031 -16.67479 -16.34141 -16.12346 -15.82945 -15.81279 -15.18476 -14.80612 -14.70602 -14.33475 -14.19901 -13.81950 -13.70386 -13.50793 -13.19556 -12.98651 -12.87583 -12.57062 -12.47165 -12.41712 -12.19838 -11.91169 -11.86500 -11.63938 -11.57818 -11.32363 -11.10662 -10.74767 -9.89391 -9.47386 -9.18993 -8.29510 -6.33312 0.12302 0.20963 1.35686 1.36999 1.48657 2.36005 2.52285 2.98496 3.06265 3.21857 3.60645 3.70226 3.84529 3.99686 4.07729 4.19434 4.20621 4.41420 4.42799 4.48882 4.57694 4.66906 4.70803 4.82252 4.84976 4.92587 4.95170 4.97130 5.02642 5.09893 5.13385 5.19204 5.27670 5.31742 5.38054 5.44835 5.51516 5.55865 5.67447 5.90967 6.18191 6.27302 6.34549 6.74349 7.31117 8.87368 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.006484 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.279418 B = 4317.509035 C = 5061.003771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.075 3.925 3 H 0.102 0.898 4 C -0.113 4.113 5 C -0.057 4.057 6 C -0.159 4.159 7 C 0.077 3.923 8 F -0.148 7.148 9 C -0.158 4.158 10 C -0.089 4.089 11 C -0.118 4.118 12 C 0.105 3.895 13 H 0.083 0.917 14 C -0.128 4.128 15 N -0.522 5.522 16 C 0.079 3.921 17 C -0.001 4.001 18 C -0.529 4.529 19 H 0.029 0.971 20 C 0.006 3.994 21 N -0.952 5.952 22 Si 0.949 3.051 23 H -0.266 1.266 24 H -0.286 1.286 25 H -0.244 1.244 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.021 0.979 39 H 0.018 0.982 40 H 0.021 0.979 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.600 18.137 -8.353 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 H 0.120 0.880 4 C -0.151 4.151 5 C -0.057 4.057 6 C -0.178 4.178 7 C 0.058 3.942 8 F -0.126 7.126 9 C -0.176 4.176 10 C -0.107 4.107 11 C -0.120 4.120 12 C -0.004 4.004 13 H 0.101 0.899 14 C -0.185 4.185 15 N -0.244 5.244 16 C -0.048 4.048 17 C -0.039 4.039 18 C -0.567 4.567 19 H 0.047 0.953 20 C -0.191 4.191 21 N -0.592 5.592 22 Si 0.772 3.228 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.167 1.167 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.036 0.964 40 H 0.040 0.960 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.367 18.182 -7.879 20.530 hybrid contribution 0.841 -1.284 -0.453 1.600 sum 6.208 16.898 -8.332 19.837 Atomic orbital electron populations 1.21777 0.93083 1.01787 1.02909 1.21921 0.96500 0.98337 0.86495 0.87993 1.21228 0.90162 1.02230 1.01476 1.19596 0.96521 0.97770 0.91815 1.21206 0.92491 1.03843 1.00242 1.17791 0.90618 1.02959 0.82854 1.91463 1.79814 1.90868 1.50501 1.21293 1.01926 1.03315 0.91093 1.21199 0.93342 0.97367 0.98834 1.20626 0.94934 1.00216 0.96203 1.20831 0.86959 0.99274 0.93287 0.89869 1.21799 1.02192 0.92217 1.02310 1.62781 1.12569 1.10545 1.38509 1.21849 0.99708 0.86303 0.96975 1.19496 0.95780 0.93182 0.95393 1.21392 1.29968 0.95269 1.10119 0.95271 1.25975 0.97701 0.94757 1.00634 1.70067 1.47493 1.06390 1.35299 0.85676 0.79350 0.78657 0.79111 1.19070 1.21149 1.16735 0.91719 0.90014 0.93948 0.91072 0.87746 0.83675 0.82951 0.83401 0.91260 0.90916 0.91799 0.91958 0.96056 0.96413 0.96022 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.15 71.98 0.66 -2.39 16 2 C 0.08 1.83 2.69 44.83 0.12 1.95 16 3 H 0.10 2.14 6.05 -2.39 -0.01 2.12 16 4 C -0.11 -2.75 4.46 29.82 0.13 -2.61 16 5 C -0.06 -1.56 5.08 -19.85 -0.10 -1.66 16 6 C -0.16 -4.20 9.63 22.37 0.22 -3.99 16 7 C 0.08 2.08 7.30 22.33 0.16 2.25 16 8 F -0.15 -4.05 17.27 44.97 0.78 -3.28 16 9 C -0.16 -3.95 10.03 22.27 0.22 -3.72 16 10 C -0.09 -2.30 9.52 22.33 0.21 -2.09 16 11 C -0.12 -3.34 4.63 -19.86 -0.09 -3.43 16 12 C 0.11 3.03 2.16 44.20 0.10 3.12 16 13 H 0.08 2.75 5.71 -2.39 -0.01 2.74 16 14 C -0.13 -2.74 9.09 71.98 0.65 -2.09 16 15 N -0.52 -16.19 4.59 -850.60 -3.90 -20.09 16 16 C 0.08 3.13 4.04 86.31 0.35 3.48 16 17 C 0.00 -0.04 3.41 29.85 0.10 0.06 16 18 C -0.53 -30.89 9.66 25.60 0.25 -30.64 16 19 H 0.03 1.88 7.99 -2.91 -0.02 1.85 16 20 C 0.01 0.35 5.47 84.65 0.46 0.82 16 21 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 22 Si 0.95 44.52 27.47 68.60 1.88 46.41 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 1.09 6.70 -2.39 -0.02 1.07 16 29 H 0.07 1.99 6.74 -2.39 -0.02 1.98 16 30 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 33 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.33 8.07 -2.39 -0.02 1.31 16 36 H 0.06 1.24 6.33 -2.39 -0.02 1.22 16 37 H 0.06 2.55 6.71 -2.39 -0.02 2.54 16 38 H 0.02 0.88 5.42 -2.39 -0.01 0.87 16 39 H 0.02 0.83 5.50 -2.39 -0.01 0.81 16 40 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 41 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -67.02 318.20 3.47 -63.55 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.97 Total: 14.47 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 3.44 Total: -40.95 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -3.60 Total: -80.20 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.78 Total: -3.28 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.41 kcal Total: -67.02 3.47 -63.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354825660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.984 kcal (2) G-P(sol) polarization free energy of solvation -67.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds