Wall clock time and date at job start Mon Mar 30 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 110.73099 * 2 1 4 4 C 1.54346 * 110.82053 * 236.37703 * 2 1 3 5 5 C 1.51375 * 105.17130 * 215.42151 * 4 2 1 6 6 C 1.38523 * 130.36017 * 197.21372 * 5 4 2 7 7 C 1.38060 * 120.24766 * 179.97438 * 6 5 4 8 8 C 1.38474 * 119.91315 * 0.02562 * 7 6 5 9 9 F 1.35104 * 120.06264 * 180.02562 * 8 7 6 10 10 C 1.38325 * 119.87958 * 0.28126 * 8 7 6 11 11 C 1.38232 * 109.75426 * 17.19091 * 5 4 2 12 12 C 1.51375 * 109.75600 * 0.02562 * 11 5 4 13 13 H 1.09002 * 110.30288 * 223.87615 * 12 11 5 14 14 N 1.46897 * 110.30564 * 101.82167 * 12 11 5 15 15 C 1.46900 * 110.99752 * 86.45413 * 14 12 11 16 16 C 1.53001 * 109.47127 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47199 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47316 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99596 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00543 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99566 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00403 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47241 * 90.00234 * 22 20 18 24 24 H 1.48500 * 109.47220 * 209.99685 * 22 20 18 25 25 H 1.48503 * 109.47080 * 329.99835 * 22 20 18 26 26 H 1.08998 * 109.46813 * 296.59737 * 1 2 3 27 27 H 1.09002 * 109.46627 * 56.59210 * 1 2 3 28 28 H 1.09000 * 109.47339 * 176.59136 * 1 2 3 29 29 H 1.08999 * 110.30167 * 96.49447 * 4 2 1 30 30 H 1.09008 * 110.30161 * 334.34529 * 4 2 1 31 31 H 1.08000 * 119.87456 * 359.96786 * 6 5 4 32 32 H 1.08004 * 120.04353 * 180.02562 * 7 6 5 33 33 H 1.07995 * 119.90611 * 179.70306 * 10 8 7 34 34 H 1.00894 * 111.00470 * 210.40874 * 14 12 11 35 35 H 1.09004 * 109.47317 * 299.99895 * 15 14 12 36 36 H 1.08993 * 109.47355 * 60.00182 * 15 14 12 37 37 H 1.09004 * 109.47293 * 300.00221 * 16 15 14 38 38 H 1.09007 * 109.47029 * 59.99730 * 16 15 14 39 39 H 1.09004 * 109.47462 * 299.99857 * 17 16 15 40 40 H 1.09000 * 109.47382 * 60.00380 * 17 16 15 41 41 H 0.97004 * 120.00085 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9159 1.0194 0.0000 4 6 2.0787 -0.7988 -1.2013 5 6 3.3323 -1.4747 -0.6884 6 6 4.3894 -2.0462 -1.3775 7 6 5.4431 -2.6132 -0.6889 8 6 5.4438 -2.6116 0.6958 9 9 6.4737 -3.1652 1.3727 10 6 4.3857 -2.0467 1.3848 11 6 3.3323 -1.4720 0.6939 12 6 2.0784 -0.7948 1.2043 13 1 2.3207 -0.1188 2.0244 14 7 1.1000 -1.7984 1.6442 15 6 1.3352 -2.1856 3.0416 16 6 0.2995 -3.2301 3.4625 17 6 0.5448 -3.6339 4.9177 18 6 -0.4750 -4.6633 5.3322 19 1 -1.2229 -4.9964 4.6279 20 6 -0.4531 -5.1797 6.6103 21 7 0.4574 -4.7736 7.4681 22 14 -1.7175 -6.4550 7.1242 23 1 -1.1959 -7.8145 6.8331 24 1 -1.9848 -6.3286 8.5795 25 1 -2.9771 -6.2357 6.3687 26 1 -0.3633 0.4601 0.9189 27 1 -0.3633 0.5659 -0.8579 28 1 -0.3634 -1.0258 -0.0611 29 1 2.3212 -0.1260 -2.0239 30 1 1.3517 -1.5446 -1.5234 31 1 4.3891 -2.0483 -2.4575 32 1 6.2658 -3.0576 -1.2295 33 1 4.3836 -2.0495 2.4648 34 1 0.1567 -1.4645 1.5153 35 1 2.3358 -2.6070 3.1384 36 1 1.2472 -1.3078 3.6816 37 1 -0.7013 -2.8092 3.3656 38 1 0.3879 -4.1080 2.8224 39 1 1.5455 -4.0551 5.0142 40 1 0.4566 -2.7563 5.5581 41 1 0.4730 -5.1371 8.3673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361106677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:10 Heat of formation + Delta-G solvation = -36.204426 kcal Electronic energy + Delta-G solvation = -21019.090885 eV Core-core repulsion = 17812.275391 eV Total energy + Delta-G solvation = -3206.815494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.84783 -40.48031 -37.09198 -35.01127 -33.08839 -31.49505 -30.96015 -30.21327 -26.98597 -26.22970 -25.16587 -22.50385 -22.31465 -21.09525 -20.29541 -19.61328 -17.07885 -16.72785 -16.26425 -16.03446 -15.62220 -15.41525 -15.29118 -14.52408 -14.33108 -13.90606 -13.72080 -13.55169 -13.15577 -12.95487 -12.58799 -12.20787 -11.95048 -11.92298 -11.68320 -11.51833 -11.35435 -11.02035 -10.99446 -10.81497 -10.73771 -10.51886 -10.41226 -9.68706 -9.34518 -9.06290 -8.98950 -8.48325 -8.32272 -8.19684 -5.97352 -3.99458 1.11708 1.18188 3.33998 3.39920 3.43268 3.48588 4.01184 4.27050 4.43145 4.45102 4.53990 4.74657 4.78410 4.88160 5.07611 5.19199 5.29302 5.38487 5.40992 5.45232 5.52398 5.64733 5.73584 5.80108 5.82099 5.88964 5.94909 6.06374 6.10479 6.10929 6.19344 6.32412 6.53806 6.72120 6.76541 6.85853 7.14879 7.30654 7.60371 7.70601 7.85561 8.02910 8.46113 9.07649 9.64474 11.14126 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.003911 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.676935 B = 7158.200210 C = 8320.033856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 H 0.084 0.916 4 C -0.069 4.069 5 C -0.097 4.097 6 C -0.085 4.085 7 C -0.154 4.154 8 C 0.095 3.905 9 F -0.141 7.141 10 C -0.131 4.131 11 C -0.045 4.045 12 C 0.124 3.876 13 H 0.054 0.946 14 N -0.681 5.681 15 C 0.057 3.943 16 C -0.106 4.106 17 C 0.022 3.978 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.346 0.654 35 H 0.066 0.934 36 H 0.025 0.975 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.015 0.985 40 H 0.014 0.986 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.164 11.119 -19.200 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 H 0.102 0.898 4 C -0.106 4.106 5 C -0.098 4.098 6 C -0.103 4.103 7 C -0.173 4.173 8 C 0.075 3.925 9 F -0.119 7.119 10 C -0.150 4.150 11 C -0.046 4.046 12 C 0.014 3.986 13 H 0.072 0.928 14 N -0.317 5.317 15 C -0.072 4.072 16 C -0.144 4.144 17 C -0.015 4.015 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.169 0.831 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.577 10.556 -19.234 22.905 hybrid contribution -0.589 -0.206 1.132 1.293 sum 5.988 10.350 -18.101 21.694 Atomic orbital electron populations 1.21830 0.94035 1.03023 1.02099 1.21990 0.96381 0.98615 0.94151 0.89799 1.21061 0.93787 0.98286 0.97464 1.20598 0.95839 0.99193 0.94168 1.20387 0.92481 0.97654 0.99776 1.20965 1.00701 1.03406 0.92232 1.17495 0.86273 0.98602 0.90092 1.91501 1.56738 1.83279 1.80401 1.20650 0.93234 1.00104 1.01005 1.20259 0.93887 0.96616 0.93850 1.20929 0.89899 0.91347 0.96446 0.92790 1.60618 1.06340 1.41636 1.23059 1.22215 1.01139 0.98061 0.85736 1.21612 0.96063 0.96761 0.99948 1.19062 0.97113 0.96216 0.89156 1.21249 1.14422 1.22927 0.97083 0.92691 1.25026 0.95869 0.96868 0.96736 1.69971 1.34475 1.43594 1.05556 0.86598 0.81860 0.81932 0.77639 1.20657 1.21261 1.19885 0.92230 0.91991 0.90777 0.90914 0.89491 0.85433 0.84844 0.84957 0.83088 0.91564 0.95635 0.93674 0.92572 0.96613 0.96812 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 7.91 37.16 0.29 -0.97 16 2 C -0.09 -0.86 3.64 -89.20 -0.32 -1.18 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.07 -0.63 6.32 -26.85 -0.17 -0.80 16 5 C -0.10 -1.11 6.14 -104.19 -0.64 -1.75 16 6 C -0.08 -0.88 10.04 -39.54 -0.40 -1.28 16 7 C -0.15 -1.73 10.03 -39.56 -0.40 -2.13 16 8 C 0.09 1.28 7.30 -39.46 -0.29 0.99 16 9 F -0.14 -2.03 17.27 2.25 0.04 -1.99 16 10 C -0.13 -1.84 9.54 -39.47 -0.38 -2.22 16 11 C -0.05 -0.59 5.65 -104.21 -0.59 -1.18 16 12 C 0.12 1.52 3.07 -67.82 -0.21 1.32 16 13 H 0.05 0.68 7.86 -51.93 -0.41 0.27 16 14 N -0.68 -9.75 6.12 -106.84 -0.65 -10.40 16 15 C 0.06 0.99 5.51 -3.82 -0.02 0.97 16 16 C -0.11 -2.22 5.41 -26.73 -0.14 -2.36 16 17 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 18 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 19 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 22 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 26 H 0.06 0.49 7.99 -51.93 -0.42 0.08 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.67 6.70 -51.93 -0.35 0.33 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.81 7.83 -51.92 -0.41 0.40 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 33 H 0.13 1.88 7.53 -52.49 -0.40 1.49 16 34 H 0.35 4.48 5.50 -39.29 -0.22 4.26 16 35 H 0.07 1.21 7.05 -51.93 -0.37 0.85 16 36 H 0.03 0.44 8.07 -51.93 -0.42 0.02 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 335.33 15.07 5.05 5.05 Total: -1.00 -31.23 335.33 -9.98 -41.21 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.32 Total: -0.29 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -3.81 Total: -23.89 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.08 Total: -37.05 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.23 -9.98 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361106677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.006 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds