Wall clock time and date at job start Mon Mar 30 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 110.73099 * 2 1 4 4 C 1.54346 * 110.82053 * 236.37703 * 2 1 3 5 5 C 1.51375 * 105.17130 * 215.42151 * 4 2 1 6 6 C 1.38523 * 130.36017 * 197.21372 * 5 4 2 7 7 C 1.38060 * 120.24766 * 179.97438 * 6 5 4 8 8 C 1.38474 * 119.91315 * 0.02562 * 7 6 5 9 9 F 1.35104 * 120.06264 * 180.02562 * 8 7 6 10 10 C 1.38325 * 119.87958 * 0.28126 * 8 7 6 11 11 C 1.38232 * 109.75426 * 17.19091 * 5 4 2 12 12 C 1.51375 * 109.75600 * 0.02562 * 11 5 4 13 13 H 1.09002 * 110.30288 * 223.87615 * 12 11 5 14 14 N 1.46897 * 110.30564 * 101.82167 * 12 11 5 15 15 C 1.46900 * 110.99752 * 86.45413 * 14 12 11 16 16 C 1.53001 * 109.47127 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47199 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47316 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99596 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00543 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99566 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00403 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47241 * 90.00234 * 22 20 18 24 24 H 1.48500 * 109.47220 * 209.99685 * 22 20 18 25 25 H 1.48503 * 109.47080 * 329.99835 * 22 20 18 26 26 H 1.08998 * 109.46813 * 296.59737 * 1 2 3 27 27 H 1.09002 * 109.46627 * 56.59210 * 1 2 3 28 28 H 1.09000 * 109.47339 * 176.59136 * 1 2 3 29 29 H 1.08999 * 110.30167 * 96.49447 * 4 2 1 30 30 H 1.09008 * 110.30161 * 334.34529 * 4 2 1 31 31 H 1.08000 * 119.87456 * 359.96786 * 6 5 4 32 32 H 1.08004 * 120.04353 * 180.02562 * 7 6 5 33 33 H 1.07995 * 119.90611 * 179.70306 * 10 8 7 34 34 H 1.00894 * 111.00470 * 210.40874 * 14 12 11 35 35 H 1.09004 * 109.47317 * 299.99895 * 15 14 12 36 36 H 1.08993 * 109.47355 * 60.00182 * 15 14 12 37 37 H 1.09004 * 109.47293 * 300.00221 * 16 15 14 38 38 H 1.09007 * 109.47029 * 59.99730 * 16 15 14 39 39 H 1.09004 * 109.47462 * 299.99857 * 17 16 15 40 40 H 1.09000 * 109.47382 * 60.00380 * 17 16 15 41 41 H 0.97004 * 120.00085 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9159 1.0194 0.0000 4 6 2.0787 -0.7988 -1.2013 5 6 3.3323 -1.4747 -0.6884 6 6 4.3894 -2.0462 -1.3775 7 6 5.4431 -2.6132 -0.6889 8 6 5.4438 -2.6116 0.6958 9 9 6.4737 -3.1652 1.3727 10 6 4.3857 -2.0467 1.3848 11 6 3.3323 -1.4720 0.6939 12 6 2.0784 -0.7948 1.2043 13 1 2.3207 -0.1188 2.0244 14 7 1.1000 -1.7984 1.6442 15 6 1.3352 -2.1856 3.0416 16 6 0.2995 -3.2301 3.4625 17 6 0.5448 -3.6339 4.9177 18 6 -0.4750 -4.6633 5.3322 19 1 -1.2229 -4.9964 4.6279 20 6 -0.4531 -5.1797 6.6103 21 7 0.4574 -4.7736 7.4681 22 14 -1.7175 -6.4550 7.1242 23 1 -1.1959 -7.8145 6.8331 24 1 -1.9848 -6.3286 8.5795 25 1 -2.9771 -6.2357 6.3687 26 1 -0.3633 0.4601 0.9189 27 1 -0.3633 0.5659 -0.8579 28 1 -0.3634 -1.0258 -0.0611 29 1 2.3212 -0.1260 -2.0239 30 1 1.3517 -1.5446 -1.5234 31 1 4.3891 -2.0483 -2.4575 32 1 6.2658 -3.0576 -1.2295 33 1 4.3836 -2.0495 2.4648 34 1 0.1567 -1.4645 1.5153 35 1 2.3358 -2.6070 3.1384 36 1 1.2472 -1.3078 3.6816 37 1 -0.7013 -2.8092 3.3656 38 1 0.3879 -4.1080 2.8224 39 1 1.5455 -4.0551 5.0142 40 1 0.4566 -2.7563 5.5581 41 1 0.4730 -5.1371 8.3673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361106677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:10 Heat of formation + Delta-G solvation = -53.315151 kcal Electronic energy + Delta-G solvation = -21019.832862 eV Core-core repulsion = 17812.275391 eV Total energy + Delta-G solvation = -3207.557471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.91780 -41.38201 -38.13820 -36.48494 -34.91104 -32.88470 -32.00680 -31.35249 -28.52399 -27.01053 -26.60773 -24.24840 -23.22871 -22.14951 -21.85328 -20.60763 -18.53187 -18.07265 -17.58802 -17.12675 -16.69834 -16.56630 -16.42074 -16.34697 -15.57315 -15.15136 -14.73904 -14.57462 -14.31621 -14.04474 -13.93638 -13.59373 -13.50466 -13.15845 -12.81836 -12.75645 -12.56433 -12.43257 -12.41721 -12.10962 -11.86146 -11.75099 -11.62714 -11.51637 -11.38039 -11.05970 -10.57419 -9.97463 -9.48299 -9.33078 -8.21625 -6.33222 0.17360 0.24631 1.38925 1.40876 1.52005 2.39823 2.54839 3.08191 3.11525 3.33751 3.47919 3.56749 3.94471 3.96120 4.00631 4.18739 4.23773 4.30425 4.36744 4.54157 4.60887 4.67444 4.70596 4.80808 4.89254 4.93641 5.01895 5.05759 5.08843 5.13726 5.21079 5.21457 5.25918 5.33496 5.46791 5.50106 5.62737 5.71480 5.83041 5.94486 6.00428 6.24276 6.49768 6.83613 7.36308 8.90499 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.003911 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.676935 B = 7158.200210 C = 8320.033856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 H 0.100 0.900 4 C -0.065 4.065 5 C -0.096 4.096 6 C -0.079 4.079 7 C -0.149 4.149 8 C 0.068 3.932 9 F -0.153 7.153 10 C -0.155 4.155 11 C -0.068 4.068 12 C 0.118 3.882 13 H 0.045 0.955 14 N -0.679 5.679 15 C 0.071 3.929 16 C -0.090 4.090 17 C 0.025 3.975 18 C -0.543 4.543 19 H 0.061 0.939 20 C -0.002 4.002 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.261 1.261 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.112 0.888 34 H 0.355 0.645 35 H 0.050 0.950 36 H 0.024 0.976 37 H 0.056 0.944 38 H 0.049 0.951 39 H -0.015 1.015 40 H -0.008 1.008 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.794 11.491 -21.989 25.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 H 0.118 0.882 4 C -0.102 4.102 5 C -0.097 4.097 6 C -0.097 4.097 7 C -0.168 4.168 8 C 0.049 3.951 9 F -0.132 7.132 10 C -0.174 4.174 11 C -0.069 4.069 12 C 0.009 3.991 13 H 0.063 0.937 14 N -0.315 5.315 15 C -0.058 4.058 16 C -0.128 4.128 17 C -0.012 4.012 18 C -0.581 4.581 19 H 0.079 0.921 20 C -0.200 4.200 21 N -0.575 5.575 22 Si 0.791 3.209 23 H -0.199 1.199 24 H -0.206 1.206 25 H -0.185 1.185 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.183 0.817 32 H 0.176 0.824 33 H 0.130 0.870 34 H 0.180 0.820 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.004 0.996 40 H 0.010 0.990 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.200 10.941 -22.044 25.153 hybrid contribution -0.110 -0.290 1.984 2.008 sum 5.091 10.650 -20.060 23.276 Atomic orbital electron populations 1.21818 0.93121 1.02833 1.03037 1.22029 0.97058 0.98866 0.92393 0.88191 1.21130 0.92444 0.98613 0.97971 1.21010 0.96860 0.98483 0.93315 1.20821 0.91287 0.95998 1.01576 1.21308 1.01724 1.02666 0.91074 1.17800 0.86200 0.99809 0.91319 1.91459 1.57233 1.83643 1.80892 1.20695 0.94613 1.01730 1.00378 1.20440 0.93914 0.97420 0.95139 1.21077 0.89384 0.90937 0.97720 0.93672 1.60508 1.07557 1.43062 1.20370 1.21866 0.99019 0.96931 0.87957 1.21350 0.97677 0.97560 0.96203 1.18966 0.95106 0.94838 0.92327 1.21690 1.15048 1.23651 0.97694 0.92079 1.26022 0.98074 0.99149 0.96717 1.70111 1.36363 1.45026 1.06048 0.85413 0.79232 0.78793 0.77413 1.19876 1.20623 1.18461 0.92493 0.89725 0.91644 0.87930 0.89187 0.81687 0.82422 0.86952 0.82005 0.93175 0.95749 0.92552 0.93177 0.99633 0.99007 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 7.91 71.98 0.57 -1.50 16 2 C -0.08 -1.35 3.64 -9.87 -0.04 -1.39 16 3 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.06 -0.95 6.32 30.52 0.19 -0.76 16 5 C -0.10 -1.96 6.14 -19.58 -0.12 -2.08 16 6 C -0.08 -1.40 10.04 22.30 0.22 -1.18 16 7 C -0.15 -3.12 10.03 22.28 0.22 -2.90 16 8 C 0.07 1.89 7.30 22.35 0.16 2.05 16 9 F -0.15 -4.66 17.27 44.97 0.78 -3.88 16 10 C -0.15 -4.62 9.54 22.34 0.21 -4.41 16 11 C -0.07 -1.78 5.65 -19.60 -0.11 -1.90 16 12 C 0.12 2.86 3.07 44.85 0.14 3.00 16 13 H 0.05 1.16 7.86 -2.39 -0.02 1.14 16 14 N -0.68 -19.25 6.12 -491.94 -3.01 -22.26 16 15 C 0.07 2.58 5.51 86.30 0.48 3.06 16 16 C -0.09 -3.86 5.41 30.59 0.17 -3.69 16 17 C 0.03 1.39 4.97 29.85 0.15 1.54 16 18 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 19 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 20 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 21 N -0.94 -58.51 13.29 21.45 0.28 -58.23 16 22 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 26 H 0.06 0.82 7.99 -2.39 -0.02 0.80 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 1.03 6.70 -2.39 -0.02 1.01 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.33 7.83 -2.38 -0.02 1.31 16 31 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.11 3.62 7.53 -2.91 -0.02 3.60 16 34 H 0.36 8.82 5.50 -89.70 -0.49 8.33 16 35 H 0.05 1.97 7.05 -2.39 -0.02 1.95 16 36 H 0.02 0.88 8.07 -2.39 -0.02 0.86 16 37 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 39 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 40 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 41 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -69.54 335.33 3.54 -66.00 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.52 Total: 12.63 kcal Atomic # 6 Polarization: -44.42 SS G_CDS: 2.94 Total: -41.47 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -2.72 Total: -80.49 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.78 Total: -3.88 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -69.54 3.54 -66.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361106677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.687 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds