Wall clock time and date at job start Mon Mar 30 2020 01:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.73260 * 2 1 4 4 C 1.54342 * 110.98762 * 123.52568 * 2 1 3 5 5 C 1.51377 * 105.17107 * 144.65864 * 4 2 1 6 6 C 1.38518 * 130.36304 * 162.80715 * 5 4 2 7 7 C 1.38066 * 120.25263 * 180.02562 * 6 5 4 8 8 C 1.38477 * 119.90577 * 359.93718 * 7 6 5 9 9 F 1.35108 * 120.05536 * 180.02562 * 8 7 6 10 10 C 1.38328 * 119.88308 * 0.02995 * 8 7 6 11 11 C 1.38235 * 109.75387 * 342.80457 * 5 4 2 12 12 C 1.51381 * 109.75264 * 359.97438 * 11 5 4 13 13 H 1.08993 * 110.38420 * 258.23184 * 12 11 5 14 14 N 1.46907 * 110.30150 * 136.12008 * 12 11 5 15 15 C 1.46896 * 110.99733 * 89.25450 * 14 12 11 16 16 C 1.52995 * 109.47208 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47600 * 179.97438 * 16 15 14 18 18 C 1.50694 * 109.47460 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00179 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00472 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99350 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00608 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47326 * 270.00340 * 22 20 18 24 24 H 1.48506 * 109.46545 * 30.00090 * 22 20 18 25 25 H 1.48498 * 109.47210 * 149.99801 * 22 20 18 26 26 H 1.08992 * 109.47843 * 183.40737 * 1 2 3 27 27 H 1.09000 * 109.47114 * 303.40833 * 1 2 3 28 28 H 1.08995 * 109.47168 * 63.40243 * 1 2 3 29 29 H 1.09006 * 110.30513 * 263.57937 * 4 2 1 30 30 H 1.09000 * 110.30864 * 25.63241 * 4 2 1 31 31 H 1.08004 * 119.87397 * 0.02562 * 6 5 4 32 32 H 1.07998 * 120.04728 * 179.97438 * 7 6 5 33 33 H 1.07992 * 119.89976 * 180.02562 * 10 8 7 34 34 H 1.00896 * 110.99821 * 213.20271 * 14 12 11 35 35 H 1.09002 * 109.47668 * 59.99704 * 15 14 12 36 36 H 1.09006 * 109.47173 * 299.99617 * 15 14 12 37 37 H 1.09003 * 109.47604 * 59.99508 * 16 15 14 38 38 H 1.08999 * 109.47292 * 299.99873 * 16 15 14 39 39 H 1.09005 * 109.46800 * 60.00280 * 17 16 15 40 40 H 1.08998 * 109.47382 * 300.00079 * 17 16 15 41 41 H 0.97005 * 119.99661 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9159 1.0194 0.0000 4 6 2.0828 -0.7959 1.2013 5 6 3.3374 -1.4689 0.6870 6 6 4.3970 -2.0371 1.3749 7 6 5.4512 -2.6021 0.6852 8 6 5.4493 -2.6023 -0.6996 9 9 6.4791 -3.1548 -1.3775 10 6 4.3913 -2.0357 -1.3874 11 6 3.3350 -1.4680 -0.6953 12 6 2.0783 -0.7948 -1.2043 13 1 1.3525 -1.5408 -1.5279 14 7 2.4004 0.1158 -2.3112 15 6 2.3478 -0.5847 -3.6013 16 6 2.6887 0.3936 -4.7271 17 6 2.6346 -0.3360 -6.0708 18 6 2.9698 0.6278 -7.1797 19 1 3.1982 1.6579 -6.9492 20 6 2.9840 0.1949 -8.4887 21 7 2.7054 -1.0594 -8.7694 22 14 3.3988 1.3897 -9.8633 23 1 2.1534 2.0350 -10.3509 24 1 4.3275 2.4295 -9.3518 25 1 4.0453 0.6546 -10.9799 26 1 -0.3634 -1.0257 0.0611 27 1 -0.3633 0.5658 0.8579 28 1 -0.3633 0.4601 -0.9189 29 1 2.3250 -0.1214 2.0227 30 1 1.3578 -1.5419 1.5267 31 1 4.3985 -2.0382 2.4550 32 1 6.2758 -3.0438 1.2249 33 1 4.3894 -2.0361 -2.4673 34 1 1.7877 0.9174 -2.3098 35 1 1.3456 -0.9840 -3.7575 36 1 3.0686 -1.4024 -3.6004 37 1 3.6910 0.7925 -4.5708 38 1 1.9683 1.2116 -4.7282 39 1 1.6324 -0.7351 -6.2274 40 1 3.3553 -1.1538 -6.0695 41 1 2.7150 -1.3639 -9.6903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361106679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:16 Heat of formation + Delta-G solvation = -60.630072 kcal Electronic energy + Delta-G solvation = -20915.913464 eV Core-core repulsion = 17708.038795 eV Total energy + Delta-G solvation = -3207.874669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.91031 -41.32275 -37.99743 -36.58014 -35.05993 -32.97619 -31.82348 -31.42891 -28.60620 -27.08124 -26.33424 -24.20536 -22.99480 -22.27968 -21.85641 -20.94608 -18.49670 -18.22535 -17.58152 -16.89140 -16.69082 -16.57225 -16.53657 -16.07354 -15.38404 -15.21829 -14.74730 -14.42470 -14.35582 -14.10015 -13.97291 -13.86618 -13.54327 -13.20560 -12.82562 -12.75183 -12.55194 -12.51625 -12.45648 -12.15805 -11.88990 -11.72811 -11.63864 -11.56582 -11.37061 -11.04681 -10.57719 -9.92617 -9.50687 -9.33691 -8.22246 -6.33725 0.16279 0.26959 1.38279 1.40278 1.51580 2.39349 2.56307 3.10855 3.15074 3.24045 3.43711 3.57724 3.89920 3.96435 4.10012 4.17402 4.19032 4.27247 4.33728 4.55693 4.61705 4.66239 4.71423 4.82127 4.87439 4.92505 4.97164 5.05638 5.09148 5.16754 5.19442 5.22988 5.27005 5.32828 5.42435 5.49525 5.61171 5.70926 5.82642 5.94414 6.01952 6.23968 6.47709 6.83017 7.35739 8.89843 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.003800 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.919850 B = 7366.054884 C = 8590.905593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 H 0.093 0.907 4 C -0.066 4.066 5 C -0.106 4.106 6 C -0.076 4.076 7 C -0.151 4.151 8 C 0.067 3.933 9 F -0.155 7.155 10 C -0.152 4.152 11 C -0.067 4.067 12 C 0.121 3.879 13 H 0.058 0.942 14 N -0.681 5.681 15 C 0.071 3.929 16 C -0.091 4.091 17 C 0.025 3.975 18 C -0.544 4.544 19 H 0.060 0.940 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.967 3.033 23 H -0.269 1.269 24 H -0.264 1.264 25 H -0.282 1.282 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.109 0.891 34 H 0.351 0.649 35 H 0.026 0.974 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.056 0.944 39 H -0.008 1.008 40 H -0.014 1.014 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 -0.023 26.015 26.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 H 0.111 0.889 4 C -0.103 4.103 5 C -0.106 4.106 6 C -0.093 4.093 7 C -0.169 4.169 8 C 0.048 3.952 9 F -0.134 7.134 10 C -0.171 4.171 11 C -0.068 4.068 12 C 0.011 3.989 13 H 0.076 0.924 14 N -0.313 5.313 15 C -0.058 4.058 16 C -0.129 4.129 17 C -0.012 4.012 18 C -0.582 4.582 19 H 0.078 0.922 20 C -0.199 4.199 21 N -0.575 5.575 22 Si 0.791 3.209 23 H -0.195 1.195 24 H -0.188 1.188 25 H -0.207 1.207 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.185 0.815 32 H 0.176 0.824 33 H 0.127 0.873 34 H 0.171 0.829 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.011 0.989 40 H 0.005 0.995 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.571 -0.227 25.913 25.962 hybrid contribution -0.204 -0.218 -1.972 1.994 sum -1.774 -0.444 23.941 24.011 Atomic orbital electron populations 1.21812 0.92629 1.02669 1.02835 1.22081 0.96774 0.99586 0.92139 0.88901 1.21132 0.92454 0.98861 0.97842 1.20988 0.97412 0.99136 0.93105 1.20814 0.91106 0.95806 1.01593 1.21308 1.01736 1.02977 0.90891 1.17875 0.86099 0.99840 0.91381 1.91460 1.57333 1.83639 1.80919 1.20713 0.94606 1.01401 1.00372 1.20490 0.95027 0.96368 0.94910 1.21296 0.91740 0.93872 0.91983 0.92400 1.60502 1.59068 1.10035 1.01679 1.21925 0.98656 0.96525 0.88681 1.21361 1.00544 0.97682 0.93312 1.18965 0.94714 0.94961 0.92593 1.21689 1.47027 0.96857 0.92599 0.92186 1.26016 0.95013 0.97056 1.01841 1.70107 1.50303 1.17120 1.19944 0.85418 0.78754 0.78672 0.78046 1.19453 1.18799 1.20714 0.92129 0.90014 0.92935 0.88011 0.88192 0.81458 0.82393 0.87323 0.82880 0.95553 0.92885 0.93310 0.92546 0.98946 0.99543 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.13 71.98 0.66 -1.13 16 2 C -0.09 -1.38 3.06 -9.88 -0.03 -1.41 16 3 H 0.09 1.50 8.05 -2.39 -0.02 1.48 16 4 C -0.07 -0.85 6.32 30.52 0.19 -0.66 16 5 C -0.11 -2.05 6.14 -19.58 -0.12 -2.17 16 6 C -0.08 -1.26 10.04 22.30 0.22 -1.03 16 7 C -0.15 -3.09 10.03 22.29 0.22 -2.87 16 8 C 0.07 1.90 7.30 22.35 0.16 2.06 16 9 F -0.15 -4.86 17.27 44.97 0.78 -4.08 16 10 C -0.15 -4.69 9.73 22.34 0.22 -4.47 16 11 C -0.07 -1.75 5.78 -19.60 -0.11 -1.86 16 12 C 0.12 2.88 2.75 44.85 0.12 3.00 16 13 H 0.06 1.45 7.57 -2.39 -0.02 1.43 16 14 N -0.68 -19.49 6.28 -491.93 -3.09 -22.58 16 15 C 0.07 2.56 5.46 86.30 0.47 3.03 16 16 C -0.09 -3.92 5.41 30.59 0.17 -3.75 16 17 C 0.03 1.39 4.97 29.85 0.15 1.54 16 18 C -0.54 -32.07 9.11 25.60 0.23 -31.83 16 19 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 20 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 21 N -0.93 -58.46 13.29 21.45 0.28 -58.18 16 22 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 H 0.06 0.75 8.06 -2.39 -0.02 0.73 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.10 1.01 7.85 -2.39 -0.02 0.99 16 31 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.11 3.86 6.11 -2.91 -0.02 3.84 16 34 H 0.35 8.83 8.37 -89.70 -0.75 8.07 16 35 H 0.03 0.94 8.07 -2.39 -0.02 0.92 16 36 H 0.05 2.06 5.98 -2.38 -0.01 2.04 16 37 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 40 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -69.92 337.62 3.28 -66.63 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.27 Total: 12.03 kcal Atomic # 6 Polarization: -44.22 SS G_CDS: 3.02 Total: -41.20 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -2.81 Total: -80.76 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.78 Total: -4.08 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -69.92 3.28 -66.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361106679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.004 kcal (2) G-P(sol) polarization free energy of solvation -69.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds