Wall clock time and date at job start Mon Mar 30 2020 01:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46958 * 2 1 4 4 O 1.42897 * 109.47527 * 239.99990 * 2 1 3 5 5 C 1.35547 * 117.00021 * 270.00492 * 4 2 1 6 6 C 1.38921 * 120.46749 * 179.72367 * 5 4 2 7 7 C 1.39234 * 118.28396 * 179.73429 * 6 5 4 8 8 N 1.38611 * 120.49332 * 180.26085 * 7 6 5 9 9 C 1.46509 * 120.00276 * 355.17304 * 8 7 6 10 10 C 1.52994 * 109.47378 * 185.08821 * 9 8 7 11 11 C 1.50698 * 115.55457 * 39.78408 * 10 9 8 12 12 H 1.07995 * 120.00415 * 264.78137 * 11 10 9 13 13 C 1.37877 * 119.99699 * 84.76986 * 11 10 9 14 14 N 1.31509 * 120.00201 * 184.86610 * 13 11 10 15 15 Si 1.86806 * 119.99957 * 4.87521 * 13 11 10 16 16 H 1.48496 * 109.47370 * 94.78938 * 15 13 11 17 17 H 1.48505 * 109.46954 * 214.79024 * 15 13 11 18 18 H 1.48500 * 109.46816 * 334.78734 * 15 13 11 19 19 C 1.53005 * 117.49415 * 254.08230 * 10 9 8 20 20 C 1.52997 * 59.99831 * 252.50831 * 19 10 9 21 21 N 1.33147 * 119.01005 * 0.53106 * 7 6 5 22 22 C 1.31717 * 120.83346 * 359.72953 * 21 7 6 23 23 N 1.31780 * 121.89189 * 359.97438 * 22 21 7 24 24 H 1.08994 * 109.47074 * 300.00141 * 1 2 3 25 25 H 1.09004 * 109.46701 * 60.00326 * 1 2 3 26 26 H 1.08998 * 109.46695 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47221 * 119.99660 * 2 1 3 28 28 H 1.09002 * 109.47639 * 60.00026 * 3 2 1 29 29 H 1.08998 * 109.47102 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47601 * 299.99683 * 3 2 1 31 31 H 1.08003 * 120.85257 * 359.97156 * 6 5 4 32 32 H 0.96997 * 120.00150 * 175.17571 * 8 7 6 33 33 H 1.09007 * 109.46678 * 305.08567 * 9 8 7 34 34 H 1.09000 * 109.46695 * 65.08079 * 9 8 7 35 35 H 0.97003 * 120.00761 * 180.02562 * 14 13 11 36 36 H 1.09001 * 117.50028 * 359.97438 * 19 10 9 37 37 H 1.08999 * 117.49563 * 145.02000 * 19 10 9 38 38 H 1.09001 * 117.50007 * 252.51092 * 20 19 10 39 39 H 1.09002 * 117.51923 * 107.48183 * 20 19 10 40 40 H 1.07996 * 119.05303 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6736 -1.1667 5 6 2.2115 -2.0096 -1.0653 6 6 2.6684 -2.7370 -2.1571 7 6 2.8687 -4.1060 -2.0007 8 7 3.3286 -4.8749 -3.0584 9 6 3.5069 -4.2699 -4.3808 10 6 3.8980 -5.3527 -5.3884 11 6 3.1833 -6.6707 -5.2366 12 1 3.6389 -7.4701 -4.6711 13 6 1.9476 -6.8560 -5.8194 14 7 1.2812 -7.9699 -5.6081 15 14 1.2201 -5.5249 -6.9096 16 1 1.5442 -5.8156 -8.3293 17 1 -0.2543 -5.4930 -6.7349 18 1 1.7920 -4.2077 -6.5310 19 6 5.3538 -5.3880 -5.8580 20 6 4.2557 -4.9023 -6.8062 21 7 2.6068 -4.6664 -0.8217 22 6 2.1695 -3.9420 0.1878 23 7 1.9735 -2.6434 0.0795 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5137 0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 2.8667 -2.2524 -3.1017 32 1 3.5324 -5.8135 -2.9230 33 1 2.5741 -3.8013 -4.6947 34 1 4.2936 -3.5170 -4.3327 35 1 0.4120 -8.1005 -6.0184 36 1 6.0328 -4.6396 -5.4493 37 1 5.7948 -6.3647 -6.0570 38 1 3.9743 -5.5595 -7.6291 39 1 4.2119 -3.8346 -7.0212 40 1 1.9657 -4.4263 1.1313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413277446.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:42 Heat of formation + Delta-G solvation = 33.648454 kcal Electronic energy + Delta-G solvation = -21374.289180 eV Core-core repulsion = 18190.422696 eV Total energy + Delta-G solvation = -3183.866484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76606 -38.72750 -37.54810 -35.00492 -33.50385 -32.22254 -31.66351 -30.07996 -27.41005 -26.58252 -25.46270 -23.69422 -23.09593 -21.78212 -20.98878 -19.36475 -18.45416 -17.59413 -16.41702 -15.76849 -15.39200 -15.22815 -15.05419 -14.81815 -14.35897 -14.21593 -13.85104 -13.54514 -13.32809 -13.12757 -12.73139 -12.56547 -12.46167 -12.30215 -12.12908 -11.27211 -11.21704 -11.04659 -10.90427 -10.60322 -10.40367 -10.30946 -10.19864 -9.64094 -9.25569 -8.98655 -8.90043 -8.69497 -8.59971 -7.57581 -6.22645 -4.28436 1.48599 1.81917 2.97927 3.21364 3.32805 3.33745 3.64072 4.27446 4.32537 4.39793 4.75078 4.76417 4.86263 4.92967 5.07606 5.12142 5.34028 5.38697 5.56243 5.58456 5.62707 5.67194 5.75118 5.84079 5.89953 5.97297 5.98346 6.03053 6.07598 6.24839 6.36147 6.48830 6.58935 6.81838 6.99005 7.05760 7.44332 7.58105 7.77602 8.21400 8.34394 8.68235 8.78238 9.39898 10.88187 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020936 B = 0.004471 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.100315 B = 6261.505353 C = 6340.063726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.081 3.919 3 C -0.150 4.150 4 O -0.300 6.300 5 C 0.385 3.615 6 C -0.327 4.327 7 C 0.465 3.535 8 N -0.666 5.666 9 C 0.154 3.846 10 C -0.014 4.014 11 C -0.496 4.496 12 H 0.080 0.920 13 C 0.085 3.915 14 N -0.888 5.888 15 Si 0.877 3.123 16 H -0.279 1.279 17 H -0.294 1.294 18 H -0.255 1.255 19 C -0.178 4.178 20 C -0.192 4.192 21 N -0.596 5.596 22 C 0.369 3.631 23 N -0.629 5.629 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.421 0.579 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.266 0.734 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.652 14.828 9.048 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.206 6.206 5 C 0.203 3.797 6 C -0.356 4.356 7 C 0.220 3.780 8 N -0.294 5.294 9 C 0.029 3.971 10 C -0.016 4.016 11 C -0.533 4.533 12 H 0.098 0.902 13 C -0.119 4.119 14 N -0.524 5.524 15 Si 0.705 3.295 16 H -0.205 1.205 17 H -0.220 1.220 18 H -0.180 1.180 19 C -0.215 4.215 20 C -0.230 4.230 21 N -0.325 5.325 22 C 0.079 3.921 23 N -0.365 5.365 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.261 0.739 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.383 14.592 9.322 17.371 hybrid contribution -0.453 0.624 -1.302 1.513 sum 0.930 15.217 8.020 17.226 Atomic orbital electron populations 1.22209 0.94988 1.03043 1.02296 1.22326 0.94362 0.92593 0.88261 1.21906 1.01942 0.94091 1.02802 1.86261 1.79654 1.16185 1.38536 1.19548 0.86920 0.84062 0.89161 1.20913 1.19919 0.93651 1.01159 1.18326 0.85344 0.87237 0.87091 1.44736 1.65349 1.13394 1.05953 1.21236 0.99530 0.94877 0.81416 1.19533 0.94882 0.96038 0.91118 1.20134 1.02527 0.95632 1.35014 0.90214 1.24963 0.96229 0.95149 0.95597 1.69889 1.13727 1.25649 1.43114 0.86894 0.77897 0.83582 0.81156 1.20470 1.22044 1.17953 1.22921 0.92111 1.01369 1.05108 1.22954 1.05472 0.99286 0.95250 1.68020 1.23579 1.40434 1.00448 1.24227 0.86977 0.84703 0.96206 1.67965 1.29821 1.12906 1.25812 0.91263 0.92157 0.91804 0.89090 0.90620 0.91888 0.91732 0.84195 0.73947 0.92091 0.93426 0.92386 0.90785 0.89350 0.89232 0.90720 0.79065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 9.53 37.16 0.35 -1.41 16 2 C 0.08 0.94 3.12 -26.73 -0.08 0.85 16 3 C -0.15 -1.32 9.56 37.16 0.36 -0.96 16 4 O -0.30 -4.49 9.78 -18.33 -0.18 -4.66 16 5 C 0.39 6.38 7.48 -16.79 -0.13 6.26 16 6 C -0.33 -5.76 9.33 -38.96 -0.36 -6.13 16 7 C 0.46 8.79 7.70 -154.72 -1.19 7.60 16 8 N -0.67 -13.17 5.45 -60.31 -0.33 -13.50 16 9 C 0.15 2.99 4.83 -4.04 -0.02 2.97 16 10 C -0.01 -0.31 1.13 -155.66 -0.18 -0.48 16 11 C -0.50 -12.74 8.09 -34.44 -0.28 -13.02 16 12 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 13 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 14 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 15 Si 0.88 20.82 25.19 -169.99 -4.28 16.54 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 18 H -0.26 -5.64 5.23 56.52 0.30 -5.34 16 19 C -0.18 -3.31 9.88 -26.73 -0.26 -3.57 16 20 C -0.19 -3.74 7.33 -26.73 -0.20 -3.94 16 21 N -0.60 -10.87 10.47 -13.87 -0.15 -11.01 16 22 C 0.37 5.68 12.28 -92.23 -1.13 4.55 16 23 N -0.63 -9.85 8.80 -14.72 -0.13 -9.98 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.14 2.35 6.88 -52.48 -0.36 1.99 16 32 H 0.42 8.83 7.68 -40.82 -0.31 8.52 16 33 H 0.06 1.24 6.42 -51.93 -0.33 0.90 16 34 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 37 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.09 1.84 7.13 -51.93 -0.37 1.47 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -29.00 329.44 -8.58 -37.58 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.04 Total: 10.36 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -3.22 Total: -5.09 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.17 Total: -59.70 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.18 Total: -4.66 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.28 Total: 16.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.00 -8.58 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413277446.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.230 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds