Wall clock time and date at job start Mon Mar 30 2020 02:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47229 * 2 1 4 4 N 1.46908 * 109.47163 * 240.00702 * 2 1 3 5 5 C 1.52994 * 109.47367 * 120.00529 * 2 1 3 6 6 C 1.52998 * 109.47101 * 185.00261 * 5 2 1 7 7 N 1.46509 * 109.47051 * 179.97438 * 6 5 2 8 8 C 1.34771 * 120.00013 * 179.97438 * 7 6 5 9 9 O 1.21583 * 119.99904 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00341 * 179.97438 * 8 7 6 11 11 C 1.39239 * 120.00324 * 175.70898 * 10 8 7 12 12 C 1.39484 * 119.83364 * 215.02504 * 11 10 8 13 13 C 1.36378 * 120.16795 * 179.76084 * 12 11 10 14 14 C 1.40870 * 119.82233 * 0.53672 * 13 12 11 15 15 C 1.41158 * 120.15567 * 179.69661 * 14 13 12 16 16 H 1.08003 * 120.00182 * 214.79996 * 15 14 13 17 17 C 1.39898 * 120.00443 * 34.80604 * 15 14 13 18 18 N 1.30879 * 119.99491 * 355.55494 * 17 15 14 19 19 Si 1.86799 * 120.00224 * 175.55570 * 17 15 14 20 20 H 1.48499 * 109.47082 * 59.99816 * 19 17 15 21 21 H 1.48497 * 109.46946 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47020 * 300.00227 * 19 17 15 23 23 C 1.40865 * 119.67857 * 359.71804 * 14 13 12 24 24 C 1.36372 * 119.82554 * 359.97438 * 23 14 13 25 25 H 1.08995 * 109.47034 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47153 * 59.99990 * 1 2 3 27 27 H 1.09000 * 109.46944 * 299.99686 * 1 2 3 28 28 H 1.00895 * 110.99734 * 176.04389 * 4 2 1 29 29 H 1.00900 * 110.99071 * 299.99579 * 4 2 1 30 30 H 1.09003 * 109.46808 * 304.99701 * 5 2 1 31 31 H 1.08998 * 109.47343 * 64.99948 * 5 2 1 32 32 H 1.08999 * 109.47187 * 299.99105 * 6 5 2 33 33 H 1.08998 * 109.47545 * 60.00126 * 6 5 2 34 34 H 0.96999 * 119.99859 * 359.97438 * 7 6 5 35 35 H 0.97001 * 119.99123 * 355.71398 * 10 8 7 36 36 H 1.07994 * 119.91415 * 359.97438 * 12 11 10 37 37 H 1.07990 * 120.08646 * 180.25249 * 13 12 11 38 38 H 0.97007 * 119.99501 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.08441 * 179.97438 * 23 14 13 40 40 H 1.08006 * 119.91269 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0400 -0.7213 1.2491 6 6 3.5648 -0.6133 1.3135 7 7 4.0532 -1.3035 2.5100 8 6 5.3740 -1.3396 2.7752 9 8 6.1604 -0.7997 2.0213 10 7 5.8233 -1.9741 3.8761 11 6 7.1922 -2.0888 4.1038 12 6 7.7011 -3.2377 4.7092 13 6 9.0412 -3.3593 4.9310 14 6 9.9107 -2.3158 4.5572 15 6 11.2982 -2.4315 4.7893 16 1 11.8769 -1.5576 5.0498 17 6 11.9239 -3.6782 4.6819 18 7 11.2102 -4.7509 4.4521 19 14 13.7780 -3.8117 4.8665 20 1 14.1780 -3.3242 6.2109 21 1 14.1899 -5.2300 4.7119 22 1 14.4399 -2.9870 3.8239 23 6 9.3886 -1.1563 3.9512 24 6 8.0470 -1.0519 3.7301 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 3.0262 -0.6499 -1.2560 29 1 1.6961 -1.6478 -1.2228 30 1 1.6054 -0.2618 2.1369 31 1 1.7517 -1.7716 1.2054 32 1 3.9995 -1.0728 0.4258 33 1 3.8532 0.4370 1.3573 34 1 3.4258 -1.7345 3.1113 35 1 5.1930 -2.3509 4.5098 36 1 7.0326 -4.0345 4.9999 37 1 9.4342 -4.2511 5.3961 38 1 11.6440 -5.6154 4.3780 39 1 10.0492 -0.3522 3.6624 40 1 7.6452 -0.1633 3.2659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414755040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:36 Heat of formation + Delta-G solvation = -18.677827 kcal Electronic energy + Delta-G solvation = -20483.292146 eV Core-core repulsion = 17297.156624 eV Total energy + Delta-G solvation = -3186.135522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.94990 -37.88879 -37.12841 -34.58675 -34.17305 -32.84238 -30.00216 -29.53395 -29.22206 -28.35446 -24.98855 -23.38306 -21.56838 -21.11492 -20.78379 -19.97857 -17.94526 -17.22362 -16.84078 -16.30368 -15.71308 -15.19958 -15.00624 -14.81116 -14.24077 -14.02474 -13.87042 -13.56804 -12.95189 -12.68305 -12.62202 -12.21976 -12.10091 -11.87106 -11.64923 -11.45541 -11.30751 -11.20297 -11.10115 -10.98158 -10.70021 -10.09709 -9.53107 -9.44543 -9.22434 -9.08654 -8.92263 -8.83597 -7.50945 -6.80521 -6.58009 -4.30302 2.69028 2.99348 3.10699 3.12182 3.14141 3.19990 3.69981 4.00864 4.23647 4.42385 4.53882 4.70549 4.74070 4.84947 5.07100 5.16284 5.29349 5.46187 5.60221 5.67761 5.76327 5.83537 5.87043 6.21680 6.45264 6.55781 6.79330 6.83386 6.83856 7.07687 7.13189 7.18340 7.29717 7.43159 7.68503 7.89107 7.99802 8.12652 8.34288 8.47878 8.67224 8.95241 8.96734 9.10852 10.33269 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047856 B = 0.002750 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.942216 B =10178.823210 C =10280.426421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.084 0.916 4 N -0.846 5.846 5 C -0.168 4.168 6 C 0.139 3.861 7 N -0.754 5.754 8 C 0.693 3.307 9 O -0.577 6.577 10 N -0.667 5.667 11 C 0.023 3.977 12 C -0.123 4.123 13 C -0.141 4.141 14 C 0.098 3.902 15 C -0.462 4.462 16 H 0.075 0.925 17 C 0.069 3.931 18 N -0.814 5.814 19 Si 0.916 3.084 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.266 1.266 23 C -0.204 4.204 24 C -0.086 4.086 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.345 0.655 29 H 0.339 0.661 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.392 0.608 35 H 0.391 0.609 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.277 0.723 39 H 0.096 0.904 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.543 3.386 -3.152 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 H 0.102 0.898 4 N -0.376 5.376 5 C -0.208 4.208 6 C 0.015 3.985 7 N -0.411 5.411 8 C 0.394 3.606 9 O -0.454 6.454 10 N -0.313 5.313 11 C -0.070 4.070 12 C -0.144 4.144 13 C -0.161 4.161 14 C 0.095 3.905 15 C -0.493 4.493 16 H 0.093 0.907 17 C -0.146 4.146 18 N -0.442 5.442 19 Si 0.741 3.259 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.224 4.224 24 C -0.107 4.107 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.159 0.841 29 H 0.152 0.848 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.225 0.775 35 H 0.224 0.776 36 H 0.108 0.892 37 H 0.150 0.850 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.199 4.184 -4.331 18.223 hybrid contribution 0.680 -1.308 1.259 1.939 sum -16.519 2.876 -3.072 17.046 Atomic orbital electron populations 1.21791 0.94212 1.02003 1.02151 1.21387 0.95611 0.98402 0.86871 0.89776 1.58960 1.16912 1.21356 1.40413 1.22692 0.95173 1.01974 1.00929 1.21106 0.92636 0.97370 0.87424 1.45104 1.06150 1.61512 1.28306 1.16047 0.82026 0.80575 0.81983 1.90912 1.54296 1.50155 1.50072 1.42116 1.07046 1.59480 1.22665 1.17078 0.80386 0.96898 1.12644 1.20291 0.96130 0.94447 1.03536 1.21175 0.90502 1.01382 1.03015 1.17714 0.93429 0.90856 0.88478 1.19447 0.93344 0.94217 1.42284 0.90702 1.25870 1.00711 0.95244 0.92729 1.69762 1.37264 0.99535 1.37590 0.86252 0.82208 0.77773 0.79702 1.19100 1.20487 1.19125 1.20810 0.93999 1.00781 1.06840 1.20420 0.93445 0.96879 0.99917 0.92803 0.91748 0.92175 0.84065 0.84835 0.90712 0.91323 0.92127 0.91708 0.77519 0.77588 0.89195 0.85034 0.91172 0.88621 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.49 37.16 0.35 -0.54 16 2 C 0.09 0.64 3.41 -67.71 -0.23 0.41 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 N -0.85 -6.61 9.18 -4.66 -0.04 -6.65 16 5 C -0.17 -1.20 4.97 -26.73 -0.13 -1.34 16 6 C 0.14 1.50 5.44 -4.04 -0.02 1.48 16 7 N -0.75 -9.33 5.56 -65.22 -0.36 -9.69 16 8 C 0.69 12.46 8.40 -86.92 -0.73 11.73 16 9 O -0.58 -13.00 13.76 5.29 0.07 -12.93 16 10 N -0.67 -11.92 5.31 -14.10 -0.07 -11.99 16 11 C 0.02 0.51 6.31 -83.57 -0.53 -0.02 16 12 C -0.12 -2.85 9.90 -39.79 -0.39 -3.25 16 13 C -0.14 -3.66 8.62 -39.26 -0.34 -4.00 16 14 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 15 C -0.46 -12.50 9.02 -37.85 -0.34 -12.84 16 16 H 0.07 1.94 7.85 -52.48 -0.41 1.53 16 17 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 18 N -0.81 -21.45 10.60 55.55 0.59 -20.87 16 19 Si 0.92 19.26 29.56 -169.99 -5.03 14.24 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.20 -5.28 9.74 -39.26 -0.38 -5.67 16 24 C -0.09 -2.13 8.61 -39.79 -0.34 -2.47 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.35 2.83 7.55 -39.29 -0.30 2.53 16 29 H 0.34 2.32 9.00 -39.29 -0.35 1.97 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.71 6.87 -51.93 -0.36 0.36 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.39 3.58 8.49 -40.82 -0.35 3.24 16 35 H 0.39 5.40 8.83 -40.82 -0.36 5.04 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.13 3.53 6.13 -52.49 -0.32 3.20 16 38 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 39 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 40 H 0.11 2.65 6.22 -52.48 -0.33 2.33 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -31.55 332.51 -9.32 -40.87 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -5.71 Total: 14.75 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -3.78 Total: -12.74 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.11 Total: -49.20 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.07 Total: -12.93 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.55 -9.32 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414755040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.190 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds