Wall clock time and date at job start Mon Mar 30 2020 02:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47229 * 2 1 4 4 N 1.46908 * 109.47163 * 240.00702 * 2 1 3 5 5 C 1.52994 * 109.47367 * 120.00529 * 2 1 3 6 6 C 1.52998 * 109.47101 * 185.00261 * 5 2 1 7 7 N 1.46509 * 109.47051 * 179.97438 * 6 5 2 8 8 C 1.34771 * 120.00013 * 179.97438 * 7 6 5 9 9 O 1.21583 * 119.99904 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00341 * 179.97438 * 8 7 6 11 11 C 1.39239 * 120.00324 * 175.70898 * 10 8 7 12 12 C 1.39484 * 119.83364 * 215.02504 * 11 10 8 13 13 C 1.36378 * 120.16795 * 179.76084 * 12 11 10 14 14 C 1.40870 * 119.82233 * 0.53672 * 13 12 11 15 15 C 1.41158 * 120.15567 * 179.69661 * 14 13 12 16 16 H 1.08003 * 120.00182 * 214.79996 * 15 14 13 17 17 C 1.39898 * 120.00443 * 34.80604 * 15 14 13 18 18 N 1.30879 * 119.99491 * 355.55494 * 17 15 14 19 19 Si 1.86799 * 120.00224 * 175.55570 * 17 15 14 20 20 H 1.48499 * 109.47082 * 59.99816 * 19 17 15 21 21 H 1.48497 * 109.46946 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47020 * 300.00227 * 19 17 15 23 23 C 1.40865 * 119.67857 * 359.71804 * 14 13 12 24 24 C 1.36372 * 119.82554 * 359.97438 * 23 14 13 25 25 H 1.08995 * 109.47034 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47153 * 59.99990 * 1 2 3 27 27 H 1.09000 * 109.46944 * 299.99686 * 1 2 3 28 28 H 1.00895 * 110.99734 * 176.04389 * 4 2 1 29 29 H 1.00900 * 110.99071 * 299.99579 * 4 2 1 30 30 H 1.09003 * 109.46808 * 304.99701 * 5 2 1 31 31 H 1.08998 * 109.47343 * 64.99948 * 5 2 1 32 32 H 1.08999 * 109.47187 * 299.99105 * 6 5 2 33 33 H 1.08998 * 109.47545 * 60.00126 * 6 5 2 34 34 H 0.96999 * 119.99859 * 359.97438 * 7 6 5 35 35 H 0.97001 * 119.99123 * 355.71398 * 10 8 7 36 36 H 1.07994 * 119.91415 * 359.97438 * 12 11 10 37 37 H 1.07990 * 120.08646 * 180.25249 * 13 12 11 38 38 H 0.97007 * 119.99501 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.08441 * 179.97438 * 23 14 13 40 40 H 1.08006 * 119.91269 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0400 -0.7213 1.2491 6 6 3.5648 -0.6133 1.3135 7 7 4.0532 -1.3035 2.5100 8 6 5.3740 -1.3396 2.7752 9 8 6.1604 -0.7997 2.0213 10 7 5.8233 -1.9741 3.8761 11 6 7.1922 -2.0888 4.1038 12 6 7.7011 -3.2377 4.7092 13 6 9.0412 -3.3593 4.9310 14 6 9.9107 -2.3158 4.5572 15 6 11.2982 -2.4315 4.7893 16 1 11.8769 -1.5576 5.0498 17 6 11.9239 -3.6782 4.6819 18 7 11.2102 -4.7509 4.4521 19 14 13.7780 -3.8117 4.8665 20 1 14.1780 -3.3242 6.2109 21 1 14.1899 -5.2300 4.7119 22 1 14.4399 -2.9870 3.8239 23 6 9.3886 -1.1563 3.9512 24 6 8.0470 -1.0519 3.7301 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 3.0262 -0.6499 -1.2560 29 1 1.6961 -1.6478 -1.2228 30 1 1.6054 -0.2618 2.1369 31 1 1.7517 -1.7716 1.2054 32 1 3.9995 -1.0728 0.4258 33 1 3.8532 0.4370 1.3573 34 1 3.4258 -1.7345 3.1113 35 1 5.1930 -2.3509 4.5098 36 1 7.0326 -4.0345 4.9999 37 1 9.4342 -4.2511 5.3961 38 1 11.6440 -5.6154 4.3780 39 1 10.0492 -0.3522 3.6624 40 1 7.6452 -0.1633 3.2659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414755040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:35 Heat of formation + Delta-G solvation = -41.472020 kcal Electronic energy + Delta-G solvation = -20484.280576 eV Core-core repulsion = 17297.156624 eV Total energy + Delta-G solvation = -3187.123952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43411 -39.36387 -38.20617 -36.19307 -35.47526 -34.61984 -31.51368 -31.10474 -30.23414 -29.53417 -26.74994 -24.42525 -23.26933 -22.60471 -21.94370 -21.30959 -19.43722 -19.09181 -18.27776 -17.14842 -17.02770 -16.74668 -16.24037 -15.80161 -15.67484 -15.43050 -15.09608 -14.75450 -14.47910 -14.25617 -13.98319 -13.58575 -13.32349 -13.22026 -12.90367 -12.78176 -12.70718 -12.49508 -12.46820 -12.10745 -11.83637 -11.78029 -11.39956 -11.25221 -11.03689 -10.67063 -10.12703 -9.63955 -9.45795 -8.68603 -8.48955 -6.31356 0.85310 1.15027 1.39936 1.49329 1.52352 1.74173 2.18375 2.25573 2.82293 3.33601 3.68371 3.70107 3.76870 4.00663 4.15749 4.39707 4.46663 4.52375 4.56676 4.59268 4.89250 4.93066 4.98810 5.05167 5.14055 5.15612 5.27189 5.33524 5.36376 5.44052 5.47028 5.69957 5.82577 6.03795 6.12045 6.25412 6.25811 6.40817 6.55283 6.69262 6.98021 7.02017 7.14303 7.63624 8.43686 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047856 B = 0.002750 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.942216 B =10178.823210 C =10280.426421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.089 3.911 3 H 0.076 0.924 4 N -0.854 5.854 5 C -0.151 4.151 6 C 0.137 3.863 7 N -0.728 5.728 8 C 0.689 3.311 9 O -0.626 6.626 10 N -0.659 5.659 11 C 0.040 3.960 12 C -0.120 4.120 13 C -0.158 4.158 14 C 0.065 3.935 15 C -0.499 4.499 16 H 0.072 0.928 17 C 0.027 3.973 18 N -0.842 5.842 19 Si 0.988 3.012 20 H -0.258 1.258 21 H -0.268 1.268 22 H -0.266 1.266 23 C -0.220 4.220 24 C -0.098 4.098 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.341 0.659 29 H 0.345 0.655 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.413 0.587 35 H 0.415 0.585 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.284 0.716 39 H 0.095 0.905 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.348 2.700 -2.863 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 H 0.094 0.906 4 N -0.385 5.385 5 C -0.191 4.191 6 C 0.013 3.987 7 N -0.385 5.385 8 C 0.390 3.610 9 O -0.506 6.506 10 N -0.307 5.307 11 C -0.054 4.054 12 C -0.140 4.140 13 C -0.178 4.178 14 C 0.063 3.937 15 C -0.530 4.530 16 H 0.090 0.910 17 C -0.185 4.185 18 N -0.470 5.470 19 Si 0.810 3.190 20 H -0.182 1.182 21 H -0.192 1.192 22 H -0.191 1.191 23 C -0.240 4.240 24 C -0.118 4.118 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.249 0.751 35 H 0.252 0.748 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.112 3.485 -4.019 19.838 hybrid contribution 1.041 -1.042 1.108 1.843 sum -18.071 2.443 -2.911 18.466 Atomic orbital electron populations 1.21757 0.93100 1.02473 1.02413 1.21413 0.96385 0.97934 0.86586 0.90554 1.58973 1.16665 1.21912 1.40928 1.22576 0.92046 1.02908 1.01541 1.21246 0.95070 0.96235 0.86151 1.44899 1.04324 1.60494 1.28815 1.16261 0.83398 0.79938 0.81406 1.90890 1.56124 1.52044 1.51545 1.41878 1.05598 1.59647 1.23530 1.17093 0.82402 0.95695 1.10212 1.20532 0.95574 0.95321 1.02594 1.21172 0.91808 1.00899 1.03945 1.18031 0.94200 0.91812 0.89683 1.19684 0.93793 0.95142 1.44333 0.90973 1.26738 1.05572 0.94386 0.91797 1.69825 1.39228 1.00092 1.37888 0.85154 0.75886 0.78189 0.79818 1.18215 1.19224 1.19079 1.20928 0.94869 1.00775 1.07454 1.20516 0.93348 0.97648 1.00337 0.92200 0.92418 0.91041 0.84532 0.84177 0.89227 0.90106 0.93177 0.92985 0.75075 0.74827 0.85666 0.86224 0.90505 0.88694 0.87619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.49 71.98 0.68 -0.71 16 2 C 0.09 1.11 3.41 44.91 0.15 1.26 16 3 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 4 N -0.85 -12.22 9.18 -168.67 -1.55 -13.77 16 5 C -0.15 -1.73 4.97 30.59 0.15 -1.58 16 6 C 0.14 2.71 5.44 86.38 0.47 3.18 16 7 N -0.73 -16.17 5.56 -478.53 -2.66 -18.83 16 8 C 0.69 23.68 8.40 179.06 1.50 25.19 16 9 O -0.63 -28.04 13.76 -3.98 -0.05 -28.10 16 10 N -0.66 -22.08 5.31 -316.78 -1.68 -23.76 16 11 C 0.04 1.78 6.31 38.56 0.24 2.02 16 12 C -0.12 -5.41 9.90 22.14 0.22 -5.19 16 13 C -0.16 -8.35 8.62 22.48 0.19 -8.16 16 14 C 0.07 3.66 5.55 -21.28 -0.12 3.54 16 15 C -0.50 -27.86 9.02 23.39 0.21 -27.65 16 16 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 17 C 0.03 1.39 5.42 85.24 0.46 1.85 16 18 N -0.84 -45.01 10.60 21.82 0.23 -44.77 16 19 Si 0.99 39.69 29.56 68.60 2.03 41.71 16 20 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 21 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 22 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 23 C -0.22 -11.78 9.74 22.48 0.22 -11.56 16 24 C -0.10 -4.89 8.61 22.13 0.19 -4.70 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.34 5.35 7.55 -89.70 -0.68 4.68 16 29 H 0.34 4.14 9.00 -89.69 -0.81 3.33 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 1.13 6.87 -2.39 -0.02 1.11 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.41 5.97 8.49 -92.71 -0.79 5.18 16 35 H 0.41 10.02 8.83 -92.71 -0.82 9.20 16 36 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.12 6.56 6.13 -2.92 -0.02 6.54 16 38 H 0.28 13.82 8.30 -92.70 -0.77 13.05 16 39 H 0.09 4.90 8.06 -2.91 -0.02 4.87 16 40 H 0.11 5.28 6.22 -2.91 -0.02 5.27 16 Total: -1.00 -70.16 332.51 -1.10 -71.26 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: -2.00 Total: 38.77 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 4.58 Total: -22.51 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -5.66 Total: -101.13 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.10 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.71 kcal Total: -70.16 -1.10 -71.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414755040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.786 kcal (2) G-P(sol) polarization free energy of solvation -70.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds