Wall clock time and date at job start Mon Mar 30 2020 02:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47160 * 2 1 4 4 C 1.53001 * 109.47048 * 240.00436 * 2 1 3 5 5 C 1.52999 * 109.46967 * 175.00087 * 4 2 1 6 6 N 1.46900 * 109.47015 * 180.02562 * 5 4 2 7 7 N 1.46490 * 109.47087 * 120.00347 * 2 1 3 8 8 C 1.34783 * 120.00331 * 274.99858 * 7 2 1 9 9 O 1.21580 * 119.99315 * 0.02562 * 8 7 2 10 10 N 1.34775 * 119.99992 * 179.97438 * 8 7 2 11 11 C 1.39244 * 119.99404 * 174.58590 * 10 8 7 12 12 C 1.39483 * 119.83267 * 326.69581 * 11 10 8 13 13 C 1.36376 * 120.16431 * 179.75862 * 12 11 10 14 14 C 1.40870 * 119.83104 * 0.51949 * 13 12 11 15 15 C 1.41155 * 120.16849 * 179.71319 * 14 13 12 16 16 H 1.08000 * 120.00425 * 156.07603 * 15 14 13 17 17 C 1.39897 * 119.99844 * 336.07797 * 15 14 13 18 18 N 1.30880 * 119.99951 * 340.64135 * 17 15 14 19 19 Si 1.86800 * 120.00073 * 160.63741 * 17 15 14 20 20 H 1.48499 * 109.47103 * 94.72831 * 19 17 15 21 21 H 1.48504 * 109.47313 * 214.73173 * 19 17 15 22 22 H 1.48503 * 109.46897 * 334.72768 * 19 17 15 23 23 C 1.40865 * 119.67015 * 359.73802 * 14 13 12 24 24 C 1.36376 * 119.82945 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.47053 * 59.99629 * 1 2 3 26 26 H 1.09001 * 109.47279 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47273 * 299.99471 * 1 2 3 28 28 H 1.09001 * 109.47050 * 294.99942 * 4 2 1 29 29 H 1.09001 * 109.47552 * 55.00038 * 4 2 1 30 30 H 1.09001 * 109.47117 * 299.99814 * 5 4 2 31 31 H 1.08996 * 109.47693 * 59.99802 * 5 4 2 32 32 H 1.00897 * 111.00381 * 56.04039 * 6 5 4 33 33 H 1.00900 * 111.00240 * 180.02562 * 6 5 4 34 34 H 0.97004 * 120.00598 * 94.72656 * 7 2 1 35 35 H 0.96993 * 120.00299 * 354.58472 * 10 8 7 36 36 H 1.07991 * 119.91882 * 0.02878 * 12 11 10 37 37 H 1.08001 * 120.08890 * 180.25529 * 13 12 11 38 38 H 0.97005 * 119.99733 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.08651 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.91529 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 7 4.0544 -1.3051 -2.5135 7 7 2.0183 -0.6906 1.1960 8 6 2.1470 -0.0184 2.3571 9 8 1.8575 1.1612 2.4118 10 7 2.5958 -0.6540 3.4576 11 6 2.8361 0.0635 4.6265 12 6 3.2943 1.3788 4.5516 13 6 3.5272 2.0894 5.6920 14 6 3.3143 1.4882 6.9480 15 6 3.5589 2.2151 8.1331 16 1 3.0583 1.9386 9.0492 17 6 4.4497 3.2937 8.1207 18 7 5.3283 3.4058 7.1572 19 14 4.3850 4.5741 9.4794 20 1 5.3683 4.2247 10.5359 21 1 4.7148 5.9087 8.9179 22 1 3.0204 4.6066 10.0643 23 6 2.8567 0.1576 7.0156 24 6 2.6236 -0.5387 5.8665 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.7516 -1.7714 -1.2057 29 1 1.6054 -0.2616 -2.1371 30 1 3.8531 0.4371 -1.3573 31 1 3.9995 -1.0727 -0.4261 32 1 3.6165 -0.9395 -3.3458 33 1 5.0597 -1.2484 -2.5787 34 1 2.2452 -1.6328 1.1535 35 1 2.7513 -1.6111 3.4354 36 1 3.4609 1.8371 3.5880 37 1 3.8780 3.1091 5.6325 38 1 5.9462 4.1535 7.1489 39 1 2.6916 -0.3101 7.9750 40 1 2.2731 -1.5591 5.9167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414761243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:14 Heat of formation + Delta-G solvation = -18.703184 kcal Electronic energy + Delta-G solvation = -20926.087035 eV Core-core repulsion = 17739.950414 eV Total energy + Delta-G solvation = -3186.136621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96204 -37.78040 -36.61135 -34.49625 -34.09309 -32.95199 -30.98813 -29.41256 -28.67163 -28.03832 -24.91163 -22.87969 -21.82194 -21.19707 -20.60668 -19.95020 -17.97032 -17.26729 -16.68803 -16.10594 -15.69686 -15.13928 -14.84941 -14.67001 -13.96166 -13.93789 -13.83327 -13.43003 -13.01725 -12.67161 -12.58463 -12.16289 -12.00289 -11.80784 -11.53020 -11.42473 -11.22344 -11.08912 -11.03096 -10.91057 -10.62618 -9.95710 -9.64715 -9.45959 -9.07962 -9.01591 -8.87675 -8.80620 -7.46078 -6.93486 -6.68937 -4.23045 2.72751 3.07904 3.10234 3.13389 3.15667 3.22530 3.79129 3.96971 4.16031 4.66558 4.68642 4.78714 4.87037 4.94890 5.34324 5.42166 5.43803 5.65875 5.69175 5.76714 5.85220 6.03396 6.20391 6.22788 6.43564 6.71796 6.79934 6.88591 6.90253 7.10094 7.10385 7.16092 7.35601 7.42039 7.67233 7.92454 8.06575 8.11246 8.32139 8.57393 8.68452 8.93905 8.98941 9.19689 10.21840 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029417 B = 0.003370 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.616993 B = 8306.432755 C = 8564.412455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.163 3.837 3 H 0.087 0.913 4 C -0.123 4.123 5 C 0.059 3.941 6 N -0.854 5.854 7 N -0.748 5.748 8 C 0.694 3.306 9 O -0.578 6.578 10 N -0.668 5.668 11 C 0.015 3.985 12 C -0.086 4.086 13 C -0.156 4.156 14 C 0.104 3.896 15 C -0.460 4.460 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.790 5.790 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.216 4.216 24 C -0.107 4.107 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.338 0.662 33 H 0.342 0.658 34 H 0.391 0.609 35 H 0.389 0.611 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.280 0.720 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 -7.407 -14.577 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.057 3.943 3 H 0.105 0.895 4 C -0.162 4.162 5 C -0.072 4.072 6 N -0.383 5.383 7 N -0.405 5.405 8 C 0.395 3.605 9 O -0.455 6.455 10 N -0.313 5.313 11 C -0.078 4.078 12 C -0.106 4.106 13 C -0.176 4.176 14 C 0.101 3.899 15 C -0.489 4.489 16 H 0.096 0.904 17 C -0.142 4.142 18 N -0.416 5.416 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.236 4.236 24 C -0.128 4.128 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.224 0.776 35 H 0.222 0.778 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.477 -6.799 -14.294 16.206 hybrid contribution 0.613 0.560 0.252 0.868 sum -2.864 -6.239 -14.043 15.631 Atomic orbital electron populations 1.22195 0.95554 1.01876 1.02566 1.20687 0.93685 0.97270 0.82706 0.89519 1.21873 0.95174 1.01768 0.97370 1.21820 0.95342 0.96341 0.93707 1.58744 1.11322 1.62936 1.05262 1.45238 1.72952 1.13291 1.08990 1.16020 0.78645 0.85457 0.80378 1.90916 1.56079 1.14356 1.84101 1.42119 1.68603 1.10393 1.10216 1.16964 1.13275 0.94421 0.83143 1.20432 0.98745 0.93284 0.98178 1.20956 1.05362 1.00069 0.91165 1.17639 0.88787 0.90258 0.93206 1.19518 1.21846 1.11141 0.96434 0.90448 1.25915 0.93541 0.98028 0.96731 1.69866 1.12669 1.28040 1.30975 0.86348 0.79765 0.79846 0.81043 1.19641 1.20052 1.18419 1.20500 1.12308 0.95169 0.95627 1.19985 1.02908 0.98178 0.91729 0.92044 0.92711 0.91648 0.90659 0.90721 0.95301 0.90633 0.85022 0.84582 0.77555 0.77769 0.88003 0.86395 0.90913 0.88705 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.48 37.16 0.35 -1.42 16 2 C 0.16 1.84 2.57 -67.94 -0.17 1.67 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 4 C -0.12 -1.04 5.02 -26.73 -0.13 -1.18 16 5 C 0.06 0.53 6.67 -3.82 -0.03 0.51 16 6 N -0.85 -6.62 9.62 -10.37 -0.10 -6.72 16 7 N -0.75 -9.47 4.53 -58.68 -0.27 -9.73 16 8 C 0.69 12.53 8.25 -86.91 -0.72 11.82 16 9 O -0.58 -13.04 13.66 5.29 0.07 -12.97 16 10 N -0.67 -12.07 5.32 -14.10 -0.07 -12.14 16 11 C 0.01 0.34 6.29 -83.57 -0.53 -0.19 16 12 C -0.09 -2.20 8.57 -39.79 -0.34 -2.54 16 13 C -0.16 -4.26 8.65 -39.26 -0.34 -4.60 16 14 C 0.10 2.83 5.58 -106.80 -0.60 2.24 16 15 C -0.46 -12.40 9.03 -37.85 -0.34 -12.75 16 16 H 0.08 1.99 7.92 -52.49 -0.42 1.58 16 17 C 0.08 1.94 5.11 -17.34 -0.09 1.85 16 18 N -0.79 -20.84 11.00 55.55 0.61 -20.23 16 19 Si 0.91 18.97 29.60 -169.99 -5.03 13.93 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 23 C -0.22 -5.34 9.74 -39.26 -0.38 -5.72 16 24 C -0.11 -2.41 9.89 -39.79 -0.39 -2.81 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.77 7.75 -51.93 -0.40 0.37 16 32 H 0.34 2.13 8.99 -39.29 -0.35 1.77 16 33 H 0.34 2.31 9.08 -39.29 -0.36 1.96 16 34 H 0.39 3.86 8.63 -40.82 -0.35 3.51 16 35 H 0.39 5.51 8.83 -40.82 -0.36 5.15 16 36 H 0.10 2.63 6.39 -52.49 -0.34 2.29 16 37 H 0.12 3.34 6.17 -52.49 -0.32 3.02 16 38 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 39 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 334.50 15.07 5.04 5.04 Total: -1.00 -31.39 334.50 -9.26 -40.65 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -5.81 Total: 15.29 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -3.71 Total: -13.12 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.17 Total: -48.83 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.39 -9.26 -40.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414761243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.947 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds