Wall clock time and date at job start Mon Mar 30 2020 02:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47160 * 2 1 4 4 C 1.53001 * 109.47048 * 240.00436 * 2 1 3 5 5 C 1.52999 * 109.46967 * 175.00087 * 4 2 1 6 6 N 1.46900 * 109.47015 * 180.02562 * 5 4 2 7 7 N 1.46490 * 109.47087 * 120.00347 * 2 1 3 8 8 C 1.34783 * 120.00331 * 274.99858 * 7 2 1 9 9 O 1.21580 * 119.99315 * 0.02562 * 8 7 2 10 10 N 1.34775 * 119.99992 * 179.97438 * 8 7 2 11 11 C 1.39244 * 119.99404 * 174.58590 * 10 8 7 12 12 C 1.39483 * 119.83267 * 326.69581 * 11 10 8 13 13 C 1.36376 * 120.16431 * 179.75862 * 12 11 10 14 14 C 1.40870 * 119.83104 * 0.51949 * 13 12 11 15 15 C 1.41155 * 120.16849 * 179.71319 * 14 13 12 16 16 H 1.08000 * 120.00425 * 156.07603 * 15 14 13 17 17 C 1.39897 * 119.99844 * 336.07797 * 15 14 13 18 18 N 1.30880 * 119.99951 * 340.64135 * 17 15 14 19 19 Si 1.86800 * 120.00073 * 160.63741 * 17 15 14 20 20 H 1.48499 * 109.47103 * 94.72831 * 19 17 15 21 21 H 1.48504 * 109.47313 * 214.73173 * 19 17 15 22 22 H 1.48503 * 109.46897 * 334.72768 * 19 17 15 23 23 C 1.40865 * 119.67015 * 359.73802 * 14 13 12 24 24 C 1.36376 * 119.82945 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.47053 * 59.99629 * 1 2 3 26 26 H 1.09001 * 109.47279 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47273 * 299.99471 * 1 2 3 28 28 H 1.09001 * 109.47050 * 294.99942 * 4 2 1 29 29 H 1.09001 * 109.47552 * 55.00038 * 4 2 1 30 30 H 1.09001 * 109.47117 * 299.99814 * 5 4 2 31 31 H 1.08996 * 109.47693 * 59.99802 * 5 4 2 32 32 H 1.00897 * 111.00381 * 56.04039 * 6 5 4 33 33 H 1.00900 * 111.00240 * 180.02562 * 6 5 4 34 34 H 0.97004 * 120.00598 * 94.72656 * 7 2 1 35 35 H 0.96993 * 120.00299 * 354.58472 * 10 8 7 36 36 H 1.07991 * 119.91882 * 0.02878 * 12 11 10 37 37 H 1.08001 * 120.08890 * 180.25529 * 13 12 11 38 38 H 0.97005 * 119.99733 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.08651 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.91529 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 7 4.0544 -1.3051 -2.5135 7 7 2.0183 -0.6906 1.1960 8 6 2.1470 -0.0184 2.3571 9 8 1.8575 1.1612 2.4118 10 7 2.5958 -0.6540 3.4576 11 6 2.8361 0.0635 4.6265 12 6 3.2943 1.3788 4.5516 13 6 3.5272 2.0894 5.6920 14 6 3.3143 1.4882 6.9480 15 6 3.5589 2.2151 8.1331 16 1 3.0583 1.9386 9.0492 17 6 4.4497 3.2937 8.1207 18 7 5.3283 3.4058 7.1572 19 14 4.3850 4.5741 9.4794 20 1 5.3683 4.2247 10.5359 21 1 4.7148 5.9087 8.9179 22 1 3.0204 4.6066 10.0643 23 6 2.8567 0.1576 7.0156 24 6 2.6236 -0.5387 5.8665 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.7516 -1.7714 -1.2057 29 1 1.6054 -0.2616 -2.1371 30 1 3.8531 0.4371 -1.3573 31 1 3.9995 -1.0727 -0.4261 32 1 3.6165 -0.9395 -3.3458 33 1 5.0597 -1.2484 -2.5787 34 1 2.2452 -1.6328 1.1535 35 1 2.7513 -1.6111 3.4354 36 1 3.4609 1.8371 3.5880 37 1 3.8780 3.1091 5.6325 38 1 5.9462 4.1535 7.1489 39 1 2.6916 -0.3101 7.9750 40 1 2.2731 -1.5591 5.9167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414761243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:14 Heat of formation + Delta-G solvation = -41.549509 kcal Electronic energy + Delta-G solvation = -20927.077726 eV Core-core repulsion = 17739.950414 eV Total energy + Delta-G solvation = -3187.127312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.43564 -39.40715 -37.84071 -36.13034 -35.15660 -34.70221 -32.21381 -31.35871 -30.44359 -28.80524 -26.75673 -23.95608 -23.24310 -22.93062 -21.78607 -21.52334 -19.45054 -19.18956 -18.17208 -17.22694 -16.82644 -16.68346 -16.20014 -15.76596 -15.68892 -15.18248 -14.98294 -14.65356 -14.53098 -14.28043 -13.92005 -13.67625 -13.59701 -13.21017 -12.92711 -12.88984 -12.76067 -12.40839 -12.33489 -12.10714 -11.79729 -11.75661 -11.50393 -11.20838 -10.93344 -10.67644 -10.05197 -9.65468 -9.42951 -8.82234 -8.57683 -6.23150 0.89196 1.16515 1.38281 1.47185 1.54678 1.83310 2.20807 2.26236 2.78420 3.40941 3.47627 3.77464 4.00823 4.09933 4.14837 4.45354 4.48468 4.49110 4.56253 4.69896 4.83251 4.89060 4.98462 5.07316 5.11720 5.18129 5.23030 5.31224 5.33287 5.47215 5.63869 5.68309 5.81675 6.11041 6.15002 6.17837 6.25644 6.38711 6.57330 6.70438 6.94910 7.04318 7.22160 7.72875 8.33997 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029417 B = 0.003370 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.616993 B = 8306.432755 C = 8564.412455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.160 3.840 3 H 0.059 0.941 4 C -0.108 4.108 5 C 0.060 3.940 6 N -0.853 5.853 7 N -0.723 5.723 8 C 0.692 3.308 9 O -0.626 6.626 10 N -0.659 5.659 11 C 0.028 3.972 12 C -0.100 4.100 13 C -0.181 4.181 14 C 0.071 3.929 15 C -0.496 4.496 16 H 0.080 0.920 17 C 0.032 3.968 18 N -0.825 5.825 19 Si 0.982 3.018 20 H -0.259 1.259 21 H -0.269 1.269 22 H -0.258 1.258 23 C -0.224 4.224 24 C -0.101 4.101 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.029 0.971 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.016 0.984 31 H 0.063 0.937 32 H 0.348 0.652 33 H 0.348 0.652 34 H 0.410 0.590 35 H 0.413 0.587 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.287 0.713 39 H 0.110 0.890 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 -9.381 -15.498 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.077 0.923 4 C -0.147 4.147 5 C -0.072 4.072 6 N -0.384 5.384 7 N -0.380 5.380 8 C 0.392 3.608 9 O -0.507 6.507 10 N -0.307 5.307 11 C -0.066 4.066 12 C -0.121 4.121 13 C -0.201 4.201 14 C 0.069 3.931 15 C -0.525 4.525 16 H 0.098 0.902 17 C -0.183 4.183 18 N -0.451 5.451 19 Si 0.802 3.198 20 H -0.183 1.183 21 H -0.194 1.194 22 H -0.182 1.182 23 C -0.244 4.244 24 C -0.122 4.122 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.247 0.753 35 H 0.250 0.750 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.174 -8.859 -15.277 18.146 hybrid contribution 0.801 1.058 0.354 1.373 sum -3.374 -7.801 -14.923 17.173 Atomic orbital electron populations 1.22140 0.94742 1.02836 1.01907 1.20835 0.94283 0.96277 0.83181 0.92315 1.21761 0.94537 1.02188 0.96167 1.21745 0.95830 0.95592 0.93988 1.58728 1.11936 1.62534 1.05201 1.45057 1.71401 1.14004 1.07572 1.16227 0.78222 0.84953 0.81363 1.90897 1.58025 1.16773 1.84960 1.41889 1.68548 1.11307 1.08975 1.17011 1.10873 0.93545 0.85164 1.20446 0.99703 0.94891 0.97029 1.20841 1.07380 0.99568 0.92289 1.17975 0.90106 0.91778 0.93262 1.19790 1.23170 1.12984 0.96590 0.90186 1.26814 0.92547 0.99587 0.99306 1.69930 1.13361 1.28939 1.32883 0.85207 0.79895 0.76827 0.77862 1.18328 1.19402 1.18207 1.20791 1.11804 0.94443 0.97346 1.20341 1.01423 0.99914 0.90498 0.89917 0.90850 0.95142 0.89281 0.88788 0.96602 0.91830 0.83908 0.83960 0.75348 0.75014 0.89195 0.88749 0.90263 0.87167 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.48 71.98 0.68 -2.46 16 2 C 0.16 3.40 2.57 44.99 0.12 3.51 16 3 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 4 C -0.11 -1.53 5.02 30.59 0.15 -1.37 16 5 C 0.06 0.98 6.67 86.30 0.58 1.55 16 6 N -0.85 -11.30 9.62 -186.72 -1.80 -13.10 16 7 N -0.72 -17.11 4.53 -457.84 -2.07 -19.19 16 8 C 0.69 24.55 8.25 179.05 1.48 26.03 16 9 O -0.63 -28.97 13.66 -3.97 -0.05 -29.02 16 10 N -0.66 -22.78 5.32 -316.78 -1.68 -24.47 16 11 C 0.03 1.28 6.29 38.56 0.24 1.52 16 12 C -0.10 -5.31 8.57 22.14 0.19 -5.12 16 13 C -0.18 -10.39 8.65 22.48 0.19 -10.19 16 14 C 0.07 4.02 5.58 -21.28 -0.12 3.90 16 15 C -0.50 -27.56 9.03 23.39 0.21 -27.35 16 16 H 0.08 4.22 7.92 -2.91 -0.02 4.20 16 17 C 0.03 1.69 5.11 85.24 0.44 2.12 16 18 N -0.83 -45.19 11.00 21.82 0.24 -44.95 16 19 Si 0.98 39.52 29.60 68.60 2.03 41.56 16 20 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 C -0.22 -11.01 9.74 22.48 0.22 -10.79 16 24 C -0.10 -4.37 9.89 22.13 0.22 -4.15 16 25 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 1.19 7.75 -2.39 -0.02 1.18 16 32 H 0.35 3.49 8.99 -89.70 -0.81 2.68 16 33 H 0.35 4.07 9.08 -89.69 -0.81 3.25 16 34 H 0.41 6.86 8.63 -92.71 -0.80 6.06 16 35 H 0.41 10.40 8.83 -92.71 -0.82 9.58 16 36 H 0.09 4.89 6.39 -2.92 -0.02 4.88 16 37 H 0.09 5.74 6.17 -2.91 -0.02 5.72 16 38 H 0.29 14.21 8.30 -92.70 -0.77 13.44 16 39 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 40 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -71.80 334.50 -0.89 -72.69 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: -2.15 Total: 39.28 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 4.60 Total: -22.79 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -5.32 Total: -101.71 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.05 Total: -29.02 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.56 kcal Total: -71.80 -0.89 -72.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414761243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.136 kcal (2) G-P(sol) polarization free energy of solvation -71.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds