Wall clock time and date at job start Mon Mar 30 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46752 * 2 1 4 4 N 1.46896 * 109.47150 * 240.00053 * 2 1 3 5 5 C 1.52998 * 109.47103 * 119.99533 * 2 1 3 6 6 C 1.53003 * 109.46900 * 185.00012 * 5 2 1 7 7 N 1.46503 * 109.47202 * 180.02562 * 6 5 2 8 8 C 1.34772 * 120.00426 * 180.02562 * 7 6 5 9 9 O 1.21586 * 119.99932 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00553 * 180.02562 * 8 7 6 11 11 C 1.39949 * 120.00446 * 174.85158 * 10 8 7 12 12 C 1.39280 * 119.95192 * 145.76537 * 11 10 8 13 13 C 1.38487 * 120.43122 * 180.02562 * 12 11 10 14 14 C 1.37682 * 120.32400 * 359.97438 * 13 12 11 15 15 C 1.40742 * 119.87896 * 359.97438 * 14 13 12 16 16 C 1.41410 * 120.20788 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99758 * 205.17707 * 16 15 14 18 18 C 1.39933 * 120.00108 * 25.17602 * 16 15 14 19 19 N 1.30828 * 119.99937 * 16.79080 * 18 16 15 20 20 Si 1.86798 * 120.00112 * 196.78604 * 18 16 15 21 21 H 1.48500 * 109.47093 * 94.96530 * 20 18 16 22 22 H 1.48496 * 109.47461 * 214.96781 * 20 18 16 23 23 H 1.48500 * 109.47052 * 334.96706 * 20 18 16 24 24 C 1.38235 * 119.94295 * 325.48513 * 11 10 8 25 25 H 1.09005 * 109.46817 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47536 * 299.99779 * 1 2 3 27 27 H 1.09002 * 109.47625 * 60.00037 * 1 2 3 28 28 H 1.00901 * 111.00038 * 299.99472 * 4 2 1 29 29 H 1.00900 * 110.99773 * 63.95155 * 4 2 1 30 30 H 1.09000 * 109.47822 * 305.00248 * 5 2 1 31 31 H 1.08999 * 109.47090 * 65.00309 * 5 2 1 32 32 H 1.08994 * 109.47678 * 300.00401 * 6 5 2 33 33 H 1.08998 * 109.46953 * 60.00799 * 6 5 2 34 34 H 0.97008 * 120.00019 * 359.97438 * 7 6 5 35 35 H 0.97006 * 119.99780 * 354.84365 * 10 8 7 36 36 H 1.08003 * 119.78384 * 359.97438 * 12 11 10 37 37 H 1.08011 * 119.84122 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.06308 * 179.97438 * 14 13 12 39 39 H 0.96996 * 119.99862 * 179.97438 * 19 18 16 40 40 H 1.08005 * 120.16383 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0400 -0.7211 1.2493 6 6 3.5648 -0.6131 1.3137 7 7 4.0533 -1.3042 2.5096 8 6 5.3741 -1.3396 2.7753 9 8 6.1604 -0.7984 2.0221 10 7 5.8235 -1.9757 3.8751 11 6 7.1995 -2.1059 4.0952 12 6 7.7022 -2.0728 5.3937 13 6 9.0620 -2.2001 5.6228 14 6 9.9325 -2.3615 4.5684 15 6 9.4389 -2.3978 3.2509 16 6 10.3267 -2.5626 2.1627 17 1 10.0539 -2.1985 1.1832 18 6 11.5589 -3.1975 2.3549 19 7 11.7619 -3.9210 3.4258 20 14 12.9138 -3.0119 1.0824 21 1 13.8210 -1.9066 1.4830 22 1 13.6852 -4.2776 0.9925 23 1 12.3122 -2.7039 -0.2399 24 6 8.0568 -2.2728 3.0238 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6962 -1.6479 -1.2227 29 1 1.7502 -0.1989 -2.0372 30 1 1.6054 -0.2617 2.1371 31 1 1.7517 -1.7714 1.2057 32 1 3.9995 -1.0726 0.4260 33 1 3.8531 0.4371 1.3574 34 1 3.4260 -1.7356 3.1107 35 1 5.1932 -2.3433 4.5144 36 1 7.0272 -1.9463 6.2272 37 1 9.4416 -2.1728 6.6336 38 1 10.9922 -2.4599 4.7518 39 1 12.6158 -4.3614 3.5589 40 1 7.6675 -2.3027 2.0167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415802309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:39 Heat of formation + Delta-G solvation = -20.111878 kcal Electronic energy + Delta-G solvation = -20620.616914 eV Core-core repulsion = 17434.419207 eV Total energy + Delta-G solvation = -3186.197707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.80669 -37.68992 -36.98910 -34.51790 -34.11916 -32.90870 -30.14367 -29.72008 -28.85742 -27.53874 -25.20341 -23.53258 -21.40965 -21.04301 -20.73464 -19.83261 -17.88553 -17.52560 -16.62281 -15.79845 -15.37154 -15.24761 -14.74434 -14.59715 -14.35665 -13.96961 -13.60926 -13.40476 -13.32507 -12.92507 -12.78263 -12.18899 -12.09683 -11.59151 -11.49152 -11.42964 -11.19509 -11.06622 -11.03869 -10.81322 -10.37909 -10.09209 -9.60291 -9.38591 -9.05917 -8.98749 -8.90644 -8.71324 -7.34862 -6.79016 -6.61405 -4.24323 2.82026 2.97287 3.15462 3.17530 3.21630 3.29670 3.85432 4.04062 4.22215 4.45844 4.63687 4.74425 4.77075 4.93843 5.08459 5.19700 5.33761 5.53562 5.60080 5.71713 5.81509 6.03233 6.17781 6.32842 6.49142 6.72699 6.84987 6.90343 6.92609 7.14000 7.15613 7.19471 7.34334 7.46406 7.79441 7.94508 8.09605 8.21231 8.35204 8.56507 8.76636 9.00640 9.07718 9.17987 10.30573 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.003436 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.531580 B = 8147.255318 C = 9238.058853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.089 3.911 3 H 0.084 0.916 4 N -0.842 5.842 5 C -0.122 4.122 6 C 0.145 3.855 7 N -0.754 5.754 8 C 0.697 3.303 9 O -0.565 6.565 10 N -0.683 5.683 11 C 0.170 3.830 12 C -0.264 4.264 13 C -0.092 4.092 14 C -0.174 4.174 15 C 0.120 3.880 16 C -0.458 4.458 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.797 5.797 20 Si 0.908 3.092 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.262 1.262 24 C -0.209 4.209 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.340 0.660 29 H 0.341 0.659 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.390 0.610 35 H 0.393 0.607 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.278 0.722 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.897 3.505 -2.817 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.023 4.023 3 H 0.103 0.897 4 N -0.372 5.372 5 C -0.161 4.161 6 C 0.021 3.979 7 N -0.411 5.411 8 C 0.397 3.603 9 O -0.441 6.441 10 N -0.330 5.330 11 C 0.078 3.922 12 C -0.286 4.286 13 C -0.112 4.112 14 C -0.194 4.194 15 C 0.117 3.883 16 C -0.488 4.488 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.423 5.423 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.185 1.185 24 C -0.230 4.230 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.222 0.778 35 H 0.226 0.774 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.272 4.000 -3.174 18.011 hybrid contribution -1.156 -0.509 -0.058 1.264 sum -18.428 3.492 -3.232 19.032 Atomic orbital electron populations 1.22644 0.97613 1.02029 1.02343 1.21363 0.91864 0.98725 0.90366 0.89744 1.58855 1.67498 1.06506 1.04299 1.21823 0.95600 1.01165 0.97490 1.21075 0.92278 0.97167 0.87352 1.45182 1.05940 1.61411 1.28576 1.15981 0.82253 0.79846 0.82229 1.90980 1.54337 1.49439 1.49295 1.42600 1.07138 1.59371 1.23877 1.17225 0.79874 1.00920 0.94223 1.20004 0.95357 1.19873 0.93331 1.20438 0.92726 1.00652 0.97335 1.21331 0.99260 1.06619 0.92202 1.17497 0.90446 0.87367 0.92999 1.19603 0.99565 1.32974 0.96624 0.90352 1.25895 0.99274 0.92813 0.96171 1.69837 1.24319 1.21828 1.26329 0.86301 0.80457 0.78373 0.81593 1.19403 1.20405 1.18538 1.21016 0.92931 1.12295 0.96803 0.92629 0.91974 0.92619 0.84730 0.84595 0.91126 0.91444 0.90343 0.92194 0.77781 0.77414 0.89438 0.89127 0.86365 0.91074 0.87514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.05 9.48 37.16 0.35 -0.70 16 2 C 0.09 0.65 3.36 -67.72 -0.23 0.42 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 4 N -0.84 -6.48 8.69 -4.67 -0.04 -6.52 16 5 C -0.12 -0.99 4.97 -26.73 -0.13 -1.12 16 6 C 0.15 1.82 5.56 -4.04 -0.02 1.79 16 7 N -0.75 -10.26 5.56 -65.23 -0.36 -10.62 16 8 C 0.70 13.48 8.29 -86.92 -0.72 12.76 16 9 O -0.57 -13.82 14.09 5.29 0.07 -13.75 16 10 N -0.68 -12.93 5.34 -14.28 -0.08 -13.00 16 11 C 0.17 4.04 6.25 -83.77 -0.52 3.52 16 12 C -0.26 -6.04 9.97 -39.10 -0.39 -6.43 16 13 C -0.09 -2.24 10.02 -39.69 -0.40 -2.63 16 14 C -0.17 -4.73 8.69 -38.84 -0.34 -5.07 16 15 C 0.12 3.42 5.57 -106.85 -0.59 2.83 16 16 C -0.46 -13.02 9.05 -37.74 -0.34 -13.36 16 17 H 0.08 2.21 7.90 -52.49 -0.41 1.80 16 18 C 0.08 1.99 5.16 -17.34 -0.09 1.90 16 19 N -0.80 -21.33 10.94 55.55 0.61 -20.72 16 20 Si 0.91 19.69 29.59 -169.99 -5.03 14.66 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 24 C -0.21 -5.68 8.39 -38.69 -0.32 -6.00 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.34 2.30 9.00 -39.29 -0.35 1.95 16 29 H 0.34 2.13 9.07 -39.29 -0.36 1.77 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.16 7.75 -51.93 -0.40 0.76 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.39 3.89 8.49 -40.82 -0.35 3.54 16 35 H 0.39 5.71 8.84 -40.82 -0.36 5.35 16 36 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 37 H 0.09 1.93 8.06 -52.48 -0.42 1.50 16 38 H 0.12 3.28 6.16 -52.49 -0.32 2.95 16 39 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 40 H 0.11 3.03 6.48 -52.48 -0.34 2.69 16 LS Contribution 335.38 15.07 5.05 5.05 Total: -1.00 -33.19 335.38 -9.36 -42.55 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -5.84 Total: 14.45 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -3.75 Total: -12.10 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.13 Total: -50.86 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.07 Total: -13.75 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.19 -9.36 -42.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415802309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.436 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds