Wall clock time and date at job start Mon Mar 30 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46752 * 2 1 4 4 N 1.46896 * 109.47150 * 240.00053 * 2 1 3 5 5 C 1.52998 * 109.47103 * 119.99533 * 2 1 3 6 6 C 1.53003 * 109.46900 * 185.00012 * 5 2 1 7 7 N 1.46503 * 109.47202 * 180.02562 * 6 5 2 8 8 C 1.34772 * 120.00426 * 180.02562 * 7 6 5 9 9 O 1.21586 * 119.99932 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00553 * 180.02562 * 8 7 6 11 11 C 1.39949 * 120.00446 * 174.85158 * 10 8 7 12 12 C 1.39280 * 119.95192 * 145.76537 * 11 10 8 13 13 C 1.38487 * 120.43122 * 180.02562 * 12 11 10 14 14 C 1.37682 * 120.32400 * 359.97438 * 13 12 11 15 15 C 1.40742 * 119.87896 * 359.97438 * 14 13 12 16 16 C 1.41410 * 120.20788 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99758 * 205.17707 * 16 15 14 18 18 C 1.39933 * 120.00108 * 25.17602 * 16 15 14 19 19 N 1.30828 * 119.99937 * 16.79080 * 18 16 15 20 20 Si 1.86798 * 120.00112 * 196.78604 * 18 16 15 21 21 H 1.48500 * 109.47093 * 94.96530 * 20 18 16 22 22 H 1.48496 * 109.47461 * 214.96781 * 20 18 16 23 23 H 1.48500 * 109.47052 * 334.96706 * 20 18 16 24 24 C 1.38235 * 119.94295 * 325.48513 * 11 10 8 25 25 H 1.09005 * 109.46817 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47536 * 299.99779 * 1 2 3 27 27 H 1.09002 * 109.47625 * 60.00037 * 1 2 3 28 28 H 1.00901 * 111.00038 * 299.99472 * 4 2 1 29 29 H 1.00900 * 110.99773 * 63.95155 * 4 2 1 30 30 H 1.09000 * 109.47822 * 305.00248 * 5 2 1 31 31 H 1.08999 * 109.47090 * 65.00309 * 5 2 1 32 32 H 1.08994 * 109.47678 * 300.00401 * 6 5 2 33 33 H 1.08998 * 109.46953 * 60.00799 * 6 5 2 34 34 H 0.97008 * 120.00019 * 359.97438 * 7 6 5 35 35 H 0.97006 * 119.99780 * 354.84365 * 10 8 7 36 36 H 1.08003 * 119.78384 * 359.97438 * 12 11 10 37 37 H 1.08011 * 119.84122 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.06308 * 179.97438 * 14 13 12 39 39 H 0.96996 * 119.99862 * 179.97438 * 19 18 16 40 40 H 1.08005 * 120.16383 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0400 -0.7211 1.2493 6 6 3.5648 -0.6131 1.3137 7 7 4.0533 -1.3042 2.5096 8 6 5.3741 -1.3396 2.7753 9 8 6.1604 -0.7984 2.0221 10 7 5.8235 -1.9757 3.8751 11 6 7.1995 -2.1059 4.0952 12 6 7.7022 -2.0728 5.3937 13 6 9.0620 -2.2001 5.6228 14 6 9.9325 -2.3615 4.5684 15 6 9.4389 -2.3978 3.2509 16 6 10.3267 -2.5626 2.1627 17 1 10.0539 -2.1985 1.1832 18 6 11.5589 -3.1975 2.3549 19 7 11.7619 -3.9210 3.4258 20 14 12.9138 -3.0119 1.0824 21 1 13.8210 -1.9066 1.4830 22 1 13.6852 -4.2776 0.9925 23 1 12.3122 -2.7039 -0.2399 24 6 8.0568 -2.2728 3.0238 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6962 -1.6479 -1.2227 29 1 1.7502 -0.1989 -2.0372 30 1 1.6054 -0.2617 2.1371 31 1 1.7517 -1.7714 1.2057 32 1 3.9995 -1.0726 0.4260 33 1 3.8531 0.4371 1.3574 34 1 3.4260 -1.7356 3.1107 35 1 5.1932 -2.3433 4.5144 36 1 7.0272 -1.9463 6.2272 37 1 9.4416 -2.1728 6.6336 38 1 10.9922 -2.4599 4.7518 39 1 12.6158 -4.3614 3.5589 40 1 7.6675 -2.3027 2.0167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415802309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:38 Heat of formation + Delta-G solvation = -45.165160 kcal Electronic energy + Delta-G solvation = -20621.703306 eV Core-core repulsion = 17434.419207 eV Total energy + Delta-G solvation = -3187.284099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.40017 -39.22928 -38.07058 -36.20445 -35.53104 -34.76346 -31.72712 -31.17768 -29.77867 -28.93905 -27.23036 -24.61643 -23.05674 -22.64966 -21.93736 -21.27760 -19.56945 -19.20760 -17.56389 -17.33730 -17.01675 -16.54388 -16.38821 -15.97116 -15.72240 -15.38241 -14.98558 -14.66187 -14.45681 -14.07742 -13.99324 -13.81228 -13.49987 -13.02674 -12.91232 -12.79665 -12.75762 -12.30585 -12.20804 -12.16487 -11.96686 -11.78064 -11.52772 -11.22507 -10.97121 -10.77127 -10.08159 -9.53112 -9.37236 -8.70717 -8.56516 -6.35318 0.94614 1.04995 1.36690 1.50195 1.51031 1.74415 2.21579 2.23004 2.76055 3.32897 3.66583 3.76356 3.88623 4.08220 4.25204 4.48639 4.49516 4.52067 4.66401 4.70058 4.90668 4.96815 5.05826 5.10013 5.14778 5.15159 5.21148 5.26273 5.32489 5.34913 5.52712 5.75973 5.85746 6.08172 6.13588 6.22983 6.32551 6.39243 6.64708 6.70901 6.96220 7.03344 7.15676 7.64118 8.35084 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.003436 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.531580 B = 8147.255318 C = 9238.058853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.089 3.911 3 H 0.075 0.925 4 N -0.859 5.859 5 C -0.110 4.110 6 C 0.146 3.854 7 N -0.726 5.726 8 C 0.691 3.309 9 O -0.622 6.622 10 N -0.670 5.670 11 C 0.177 3.823 12 C -0.251 4.251 13 C -0.090 4.090 14 C -0.200 4.200 15 C 0.089 3.911 16 C -0.504 4.504 17 H 0.060 0.940 18 C 0.038 3.962 19 N -0.822 5.822 20 Si 0.982 3.018 21 H -0.259 1.259 22 H -0.260 1.260 23 H -0.266 1.266 24 C -0.238 4.238 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.345 0.655 29 H 0.348 0.652 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.413 0.587 35 H 0.418 0.582 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.289 0.711 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.704 3.375 -1.457 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.023 4.023 3 H 0.094 0.906 4 N -0.390 5.390 5 C -0.148 4.148 6 C 0.022 3.978 7 N -0.384 5.384 8 C 0.391 3.609 9 O -0.501 6.501 10 N -0.319 5.319 11 C 0.083 3.917 12 C -0.273 4.273 13 C -0.109 4.109 14 C -0.220 4.220 15 C 0.087 3.913 16 C -0.533 4.533 17 H 0.078 0.922 18 C -0.177 4.177 19 N -0.448 5.448 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.184 1.184 23 H -0.191 1.191 24 C -0.260 4.260 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.158 0.842 29 H 0.162 0.838 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.250 0.750 35 H 0.256 0.744 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.182 3.845 -1.769 19.644 hybrid contribution -0.746 -0.450 -0.423 0.968 sum -19.928 3.395 -2.192 20.334 Atomic orbital electron populations 1.22538 0.95782 1.02546 1.02895 1.21346 0.93188 0.98017 0.89789 0.90646 1.58859 1.68141 1.07088 1.04922 1.21776 0.91764 1.02368 0.98869 1.21141 0.95299 0.95671 0.85656 1.44962 1.04117 1.60338 1.28939 1.16268 0.83575 0.79411 0.81638 1.90957 1.56366 1.51768 1.51025 1.42334 1.05802 1.59239 1.24524 1.17295 0.81682 0.98935 0.93820 1.20444 0.95567 1.17252 0.94009 1.20836 0.93098 0.98806 0.98109 1.21304 0.99261 1.08853 0.92586 1.17833 0.91241 0.88286 0.93980 1.19738 1.01836 1.35564 0.96192 0.92194 1.26691 1.00786 0.91667 0.98538 1.69857 1.25391 1.21811 1.27732 0.85207 0.77090 0.79189 0.78257 1.18363 1.18435 1.19056 1.20947 0.93391 1.14881 0.96777 0.92086 0.91331 0.92199 0.84167 0.83831 0.89080 0.90226 0.93014 0.93743 0.75048 0.74428 0.84907 0.85702 0.87704 0.89991 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.48 71.98 0.68 -0.89 16 2 C 0.09 1.16 3.36 44.92 0.15 1.31 16 3 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 4 N -0.86 -12.64 8.69 -168.69 -1.47 -14.11 16 5 C -0.11 -1.53 4.97 30.59 0.15 -1.38 16 6 C 0.15 3.58 5.56 86.38 0.48 4.06 16 7 N -0.73 -18.73 5.56 -478.54 -2.66 -21.39 16 8 C 0.69 26.61 8.29 179.06 1.48 28.09 16 9 O -0.62 -31.63 14.09 -3.99 -0.06 -31.68 16 10 N -0.67 -24.36 5.34 -317.34 -1.70 -26.06 16 11 C 0.18 8.32 6.25 38.09 0.24 8.56 16 12 C -0.25 -10.86 9.97 22.58 0.23 -10.64 16 13 C -0.09 -4.20 10.02 22.20 0.22 -3.98 16 14 C -0.20 -11.10 8.69 22.75 0.20 -10.90 16 15 C 0.09 5.35 5.57 -21.31 -0.12 5.23 16 16 C -0.50 -30.36 9.05 23.46 0.21 -30.15 16 17 H 0.06 3.66 7.90 -2.91 -0.02 3.64 16 18 C 0.04 2.06 5.16 85.25 0.44 2.50 16 19 N -0.82 -44.92 10.94 21.82 0.24 -44.68 16 20 Si 0.98 41.33 29.59 68.60 2.03 43.36 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 24 C -0.24 -13.52 8.39 22.85 0.19 -13.33 16 25 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.34 4.33 9.00 -89.69 -0.81 3.52 16 29 H 0.35 4.15 9.07 -89.69 -0.81 3.34 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.57 7.75 -2.39 -0.02 1.56 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.41 6.96 8.49 -92.70 -0.79 6.17 16 35 H 0.42 10.78 8.84 -92.70 -0.82 9.96 16 36 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.13 4.93 8.06 -2.91 -0.02 4.90 16 38 H 0.11 5.99 6.16 -2.91 -0.02 5.97 16 39 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 40 H 0.08 4.87 6.48 -2.91 -0.02 4.85 16 Total: -1.00 -77.12 335.38 -1.19 -78.30 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: -2.14 Total: 37.77 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 4.56 Total: -21.51 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -5.58 Total: -106.24 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.06 Total: -31.68 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -77.12 -1.19 -78.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415802309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.138 kcal (2) G-P(sol) polarization free energy of solvation -77.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds