Wall clock time and date at job start Mon Mar 30 2020 02:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46811 * 2 1 4 4 C 1.52997 * 109.47208 * 240.00060 * 2 1 3 5 5 C 1.53000 * 109.47230 * 174.99905 * 4 2 1 6 6 N 1.46905 * 109.47260 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.46951 * 119.99826 * 2 1 3 8 8 C 1.34773 * 119.99944 * 274.99800 * 7 2 1 9 9 O 1.21582 * 120.00414 * 0.27886 * 8 7 2 10 10 N 1.34778 * 119.99615 * 180.02562 * 8 7 2 11 11 C 1.39960 * 119.99780 * 174.88176 * 10 8 7 12 12 C 1.39289 * 119.94335 * 146.39348 * 11 10 8 13 13 C 1.38494 * 120.42753 * 179.97438 * 12 11 10 14 14 C 1.37684 * 120.31998 * 0.02562 * 13 12 11 15 15 C 1.40735 * 119.88476 * 0.02562 * 14 13 12 16 16 C 1.41405 * 120.21155 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99886 * 151.67820 * 16 15 14 18 18 C 1.39935 * 119.99739 * 331.67077 * 16 15 14 19 19 N 1.30827 * 119.99832 * 348.99389 * 18 16 15 20 20 Si 1.86803 * 119.99882 * 168.99494 * 18 16 15 21 21 H 1.48506 * 109.46788 * 60.00410 * 20 18 16 22 22 H 1.48497 * 109.46875 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47128 * 300.00304 * 20 18 16 24 24 C 1.38227 * 119.94930 * 326.12760 * 11 10 8 25 25 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46952 * 299.99985 * 1 2 3 27 27 H 1.08997 * 109.46957 * 60.00337 * 1 2 3 28 28 H 1.09005 * 109.47308 * 294.99990 * 4 2 1 29 29 H 1.09001 * 109.47372 * 54.99900 * 4 2 1 30 30 H 1.08997 * 109.47182 * 299.99961 * 5 4 2 31 31 H 1.09001 * 109.46938 * 60.00291 * 5 4 2 32 32 H 1.00897 * 110.99784 * 180.02562 * 6 5 4 33 33 H 1.00896 * 110.99818 * 303.95155 * 6 5 4 34 34 H 0.97000 * 119.99569 * 95.00885 * 7 2 1 35 35 H 0.97001 * 120.00729 * 354.88277 * 10 8 7 36 36 H 1.08000 * 119.78918 * 0.02562 * 12 11 10 37 37 H 1.07999 * 119.83432 * 180.02562 * 13 12 11 38 38 H 1.07997 * 120.05605 * 179.97438 * 14 13 12 39 39 H 0.96999 * 119.99639 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.15723 * 359.97359 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 7 4.0546 -1.3063 -2.5128 7 7 2.0183 -0.6906 1.1962 8 6 2.1470 -0.0182 2.3571 9 8 1.8531 1.1602 2.4130 10 7 2.5968 -0.6535 3.4575 11 6 2.8324 0.0668 4.6341 12 6 2.6093 -0.5315 5.8720 13 6 2.8397 0.1718 7.0427 14 6 3.2917 1.4714 6.9952 15 6 3.5205 2.0893 5.7517 16 6 3.9852 3.4236 5.6949 17 1 4.5791 3.7533 4.8553 18 6 3.6754 4.3169 6.7266 19 7 2.7863 3.9907 7.6292 20 14 4.5314 5.9749 6.8150 21 1 4.2484 6.7446 5.5769 22 1 4.0304 6.7284 7.9924 23 1 5.9963 5.7693 6.9461 24 6 3.2914 1.3689 4.5660 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7517 -1.7715 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 3.8532 0.4370 -1.3573 31 1 3.9994 -1.0728 -0.4260 32 1 5.0599 -1.2495 -2.5779 33 1 3.7453 -2.2665 -2.5271 34 1 2.2491 -1.6317 1.1526 35 1 2.7571 -1.6098 3.4340 36 1 2.2552 -1.5507 5.9193 37 1 2.6639 -0.3016 7.9973 38 1 3.4695 2.0160 7.9107 39 1 2.5718 4.6098 8.3445 40 1 3.4691 1.8320 3.6066 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415815564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:20 Heat of formation + Delta-G solvation = -18.751780 kcal Electronic energy + Delta-G solvation = -21090.567089 eV Core-core repulsion = 17904.428361 eV Total energy + Delta-G solvation = -3186.138729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.01131 -37.74513 -36.57368 -34.45224 -34.11378 -32.99351 -31.01437 -29.75191 -28.04211 -27.70887 -25.23408 -23.01871 -21.99773 -20.93417 -20.62137 -20.02960 -18.03750 -17.54305 -16.45556 -15.66673 -15.45910 -15.22676 -14.82814 -14.53921 -14.46246 -14.04666 -13.92395 -13.24267 -13.02530 -12.86107 -12.57309 -12.22500 -11.96733 -11.72502 -11.60461 -11.25564 -11.22689 -11.06672 -10.92718 -10.60221 -10.45215 -10.10607 -9.71047 -9.51736 -9.17319 -9.05069 -8.85945 -8.81145 -7.35633 -6.80680 -6.60375 -4.28901 2.79718 2.92992 3.09253 3.12925 3.16726 3.26456 3.77933 4.02524 4.17103 4.58917 4.70729 4.74439 4.86216 5.03464 5.31592 5.43121 5.46026 5.65368 5.76791 5.77809 5.85794 6.03250 6.25350 6.27850 6.43783 6.69050 6.79953 6.84760 6.85643 7.09780 7.10834 7.15565 7.31539 7.41346 7.74982 7.88051 8.05355 8.16034 8.32109 8.50158 8.73055 8.97065 9.03415 9.12026 10.32812 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019820 B = 0.004015 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.394227 B = 6971.423202 C = 7619.257819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.161 3.839 3 H 0.090 0.910 4 C -0.123 4.123 5 C 0.058 3.942 6 N -0.853 5.853 7 N -0.747 5.747 8 C 0.696 3.304 9 O -0.562 6.562 10 N -0.683 5.683 11 C 0.168 3.832 12 C -0.261 4.261 13 C -0.094 4.094 14 C -0.170 4.170 15 C 0.120 3.880 16 C -0.459 4.459 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.802 5.802 20 Si 0.911 3.089 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.207 4.207 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.342 0.658 33 H 0.337 0.663 34 H 0.389 0.611 35 H 0.392 0.608 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.279 0.721 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 -10.789 -12.810 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.072 4.072 6 N -0.382 5.382 7 N -0.404 5.404 8 C 0.397 3.603 9 O -0.437 6.437 10 N -0.329 5.329 11 C 0.075 3.925 12 C -0.283 4.283 13 C -0.113 4.113 14 C -0.190 4.190 15 C 0.117 3.883 16 C -0.489 4.489 17 H 0.093 0.907 18 C -0.143 4.143 19 N -0.428 5.428 20 Si 0.736 3.264 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.229 4.229 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.222 0.778 35 H 0.226 0.774 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.769 -9.015 -12.998 15.837 hybrid contribution 0.842 -0.879 0.764 1.437 sum 0.073 -9.894 -12.234 15.734 Atomic orbital electron populations 1.22192 0.95443 1.01798 1.02766 1.20741 0.93789 0.97524 0.82413 0.89166 1.21877 0.95388 1.01023 0.97828 1.21825 0.95055 0.99763 0.90576 1.58752 1.16927 1.20423 1.42134 1.45269 1.72810 1.13246 1.09071 1.16010 0.78603 0.85442 0.80262 1.90996 1.54853 1.14081 1.83773 1.42614 1.69262 1.10775 1.10295 1.17227 0.99728 0.92594 0.82924 1.20023 1.17128 0.99767 0.91368 1.20462 1.00266 0.95148 0.95407 1.21391 1.05594 0.93223 0.98756 1.17496 0.88093 0.92450 0.90288 1.19507 1.29581 0.94651 1.05143 0.90666 1.25869 0.93519 1.00487 0.94375 1.69799 1.24618 1.36698 1.11715 0.86328 0.80416 0.81187 0.78500 1.19055 1.20400 1.18953 1.20996 1.09313 0.94272 0.98320 0.92832 0.91601 0.91817 0.91751 0.89598 0.90724 0.95126 0.84597 0.85072 0.77797 0.77446 0.89430 0.89081 0.86131 0.91030 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.48 37.16 0.35 -1.49 16 2 C 0.16 1.87 2.57 -67.93 -0.17 1.70 16 3 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 4 C -0.12 -1.05 5.01 -26.73 -0.13 -1.19 16 5 C 0.06 0.53 6.67 -3.82 -0.03 0.51 16 6 N -0.85 -6.66 9.62 -10.37 -0.10 -6.76 16 7 N -0.75 -9.45 4.53 -58.68 -0.27 -9.71 16 8 C 0.70 12.79 8.26 -86.92 -0.72 12.07 16 9 O -0.56 -13.24 13.73 5.29 0.07 -13.16 16 10 N -0.68 -12.37 5.35 -14.27 -0.08 -12.45 16 11 C 0.17 3.87 6.26 -83.76 -0.52 3.35 16 12 C -0.26 -5.85 9.97 -39.10 -0.39 -6.24 16 13 C -0.09 -2.23 10.02 -39.69 -0.40 -2.63 16 14 C -0.17 -4.54 8.66 -38.84 -0.34 -4.88 16 15 C 0.12 3.36 5.55 -106.85 -0.59 2.77 16 16 C -0.46 -12.86 9.06 -37.74 -0.34 -13.20 16 17 H 0.08 2.05 7.87 -52.49 -0.41 1.63 16 18 C 0.07 1.94 5.25 -17.34 -0.09 1.85 16 19 N -0.80 -21.64 10.82 55.55 0.60 -21.04 16 20 Si 0.91 19.58 29.57 -169.99 -5.03 14.56 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 24 C -0.21 -5.50 8.39 -38.69 -0.32 -5.82 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.29 7.75 -51.93 -0.40 -0.11 16 32 H 0.34 2.32 9.08 -39.29 -0.36 1.96 16 33 H 0.34 2.11 8.99 -39.29 -0.35 1.75 16 34 H 0.39 3.66 8.62 -40.82 -0.35 3.31 16 35 H 0.39 5.41 8.83 -40.82 -0.36 5.05 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.12 3.31 6.18 -52.49 -0.32 2.98 16 39 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 40 H 0.11 2.94 6.44 -52.48 -0.34 2.60 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -32.45 334.73 -9.26 -41.71 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -5.81 Total: 15.01 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.70 Total: -13.19 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.16 Total: -49.96 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.16 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.45 -9.26 -41.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415815564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.960 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds