Wall clock time and date at job start Mon Mar 30 2020 02:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46811 * 2 1 4 4 C 1.52997 * 109.47208 * 240.00060 * 2 1 3 5 5 C 1.53000 * 109.47230 * 174.99905 * 4 2 1 6 6 N 1.46905 * 109.47260 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.46951 * 119.99826 * 2 1 3 8 8 C 1.34773 * 119.99944 * 274.99800 * 7 2 1 9 9 O 1.21582 * 120.00414 * 0.27886 * 8 7 2 10 10 N 1.34778 * 119.99615 * 180.02562 * 8 7 2 11 11 C 1.39960 * 119.99780 * 174.88176 * 10 8 7 12 12 C 1.39289 * 119.94335 * 146.39348 * 11 10 8 13 13 C 1.38494 * 120.42753 * 179.97438 * 12 11 10 14 14 C 1.37684 * 120.31998 * 0.02562 * 13 12 11 15 15 C 1.40735 * 119.88476 * 0.02562 * 14 13 12 16 16 C 1.41405 * 120.21155 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99886 * 151.67820 * 16 15 14 18 18 C 1.39935 * 119.99739 * 331.67077 * 16 15 14 19 19 N 1.30827 * 119.99832 * 348.99389 * 18 16 15 20 20 Si 1.86803 * 119.99882 * 168.99494 * 18 16 15 21 21 H 1.48506 * 109.46788 * 60.00410 * 20 18 16 22 22 H 1.48497 * 109.46875 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47128 * 300.00304 * 20 18 16 24 24 C 1.38227 * 119.94930 * 326.12760 * 11 10 8 25 25 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46952 * 299.99985 * 1 2 3 27 27 H 1.08997 * 109.46957 * 60.00337 * 1 2 3 28 28 H 1.09005 * 109.47308 * 294.99990 * 4 2 1 29 29 H 1.09001 * 109.47372 * 54.99900 * 4 2 1 30 30 H 1.08997 * 109.47182 * 299.99961 * 5 4 2 31 31 H 1.09001 * 109.46938 * 60.00291 * 5 4 2 32 32 H 1.00897 * 110.99784 * 180.02562 * 6 5 4 33 33 H 1.00896 * 110.99818 * 303.95155 * 6 5 4 34 34 H 0.97000 * 119.99569 * 95.00885 * 7 2 1 35 35 H 0.97001 * 120.00729 * 354.88277 * 10 8 7 36 36 H 1.08000 * 119.78918 * 0.02562 * 12 11 10 37 37 H 1.07999 * 119.83432 * 180.02562 * 13 12 11 38 38 H 1.07997 * 120.05605 * 179.97438 * 14 13 12 39 39 H 0.96999 * 119.99639 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.15723 * 359.97359 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 7 4.0546 -1.3063 -2.5128 7 7 2.0183 -0.6906 1.1962 8 6 2.1470 -0.0182 2.3571 9 8 1.8531 1.1602 2.4130 10 7 2.5968 -0.6535 3.4575 11 6 2.8324 0.0668 4.6341 12 6 2.6093 -0.5315 5.8720 13 6 2.8397 0.1718 7.0427 14 6 3.2917 1.4714 6.9952 15 6 3.5205 2.0893 5.7517 16 6 3.9852 3.4236 5.6949 17 1 4.5791 3.7533 4.8553 18 6 3.6754 4.3169 6.7266 19 7 2.7863 3.9907 7.6292 20 14 4.5314 5.9749 6.8150 21 1 4.2484 6.7446 5.5769 22 1 4.0304 6.7284 7.9924 23 1 5.9963 5.7693 6.9461 24 6 3.2914 1.3689 4.5660 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7517 -1.7715 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 3.8532 0.4370 -1.3573 31 1 3.9994 -1.0728 -0.4260 32 1 5.0599 -1.2495 -2.5779 33 1 3.7453 -2.2665 -2.5271 34 1 2.2491 -1.6317 1.1526 35 1 2.7571 -1.6098 3.4340 36 1 2.2552 -1.5507 5.9193 37 1 2.6639 -0.3016 7.9973 38 1 3.4695 2.0160 7.9107 39 1 2.5718 4.6098 8.3445 40 1 3.4691 1.8320 3.6066 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415815564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:20 Heat of formation + Delta-G solvation = -42.986365 kcal Electronic energy + Delta-G solvation = -21091.617980 eV Core-core repulsion = 17904.428361 eV Total energy + Delta-G solvation = -3187.189619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50223 -39.35806 -37.84664 -36.13856 -35.18031 -34.79585 -32.20307 -31.72912 -29.48703 -28.81358 -27.23851 -24.20431 -23.21507 -22.73702 -21.85727 -21.61208 -19.62051 -19.26118 -17.65421 -17.28379 -16.68412 -16.52075 -16.30194 -16.20055 -15.73801 -15.35380 -14.99745 -14.83630 -14.64424 -14.11836 -14.00455 -13.72345 -13.42823 -13.11148 -12.93406 -12.82330 -12.57739 -12.44705 -12.21933 -12.07971 -11.95993 -11.83156 -11.58224 -11.29006 -11.03778 -10.70398 -10.13960 -9.61791 -9.34755 -8.66714 -8.55428 -6.37661 0.94884 1.03815 1.35717 1.48197 1.51081 1.71157 2.20266 2.23790 2.77909 3.31503 3.45877 3.75321 3.94873 4.04313 4.27925 4.41697 4.47801 4.54095 4.64222 4.68248 4.78417 4.94042 5.03230 5.07755 5.12946 5.14403 5.16240 5.23684 5.31306 5.35133 5.59212 5.74354 5.84566 6.07294 6.13366 6.18800 6.21245 6.39269 6.59300 6.70844 6.96103 7.02253 7.14377 7.64400 8.38409 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019820 B = 0.004015 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.394227 B = 6971.423202 C = 7619.257819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 H 0.057 0.943 4 C -0.107 4.107 5 C 0.060 3.940 6 N -0.855 5.855 7 N -0.719 5.719 8 C 0.693 3.307 9 O -0.619 6.619 10 N -0.670 5.670 11 C 0.175 3.825 12 C -0.248 4.248 13 C -0.092 4.092 14 C -0.196 4.196 15 C 0.089 3.911 16 C -0.504 4.504 17 H 0.064 0.936 18 C 0.033 3.967 19 N -0.832 5.832 20 Si 0.985 3.015 21 H -0.267 1.267 22 H -0.262 1.262 23 H -0.257 1.257 24 C -0.234 4.234 25 H 0.076 0.924 26 H 0.027 0.973 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.348 0.652 33 H 0.349 0.651 34 H 0.411 0.589 35 H 0.418 0.582 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.287 0.713 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.284 -13.175 -13.672 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.053 3.947 3 H 0.075 0.925 4 C -0.145 4.145 5 C -0.071 4.071 6 N -0.386 5.386 7 N -0.377 5.377 8 C 0.393 3.607 9 O -0.498 6.498 10 N -0.319 5.319 11 C 0.081 3.919 12 C -0.270 4.270 13 C -0.111 4.111 14 C -0.216 4.216 15 C 0.086 3.914 16 C -0.534 4.534 17 H 0.082 0.918 18 C -0.181 4.181 19 N -0.459 5.459 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.186 1.186 23 H -0.181 1.181 24 C -0.256 4.256 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.248 0.752 35 H 0.255 0.745 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.106 -11.510 -13.911 18.089 hybrid contribution 0.890 -0.308 0.923 1.319 sum -0.215 -11.818 -12.987 17.561 Atomic orbital electron populations 1.22139 0.94714 1.02950 1.01840 1.20858 0.94329 0.96387 0.83096 0.92503 1.21753 0.94745 1.02098 0.95939 1.21730 0.95533 0.98750 0.91111 1.58704 1.17542 1.21237 1.41096 1.45036 1.71172 1.14051 1.07415 1.16249 0.78187 0.84868 0.81364 1.90975 1.57157 1.16888 1.84749 1.42345 1.68891 1.11734 1.08939 1.17283 0.97748 0.91723 0.85149 1.20460 1.14882 1.01422 0.90190 1.20847 0.98598 0.94029 0.97606 1.21356 1.07790 0.94787 0.97625 1.17834 0.89038 0.93093 0.91442 1.19738 1.31493 0.95892 1.06304 0.91770 1.26726 0.93732 1.04213 0.93398 1.69853 1.25427 1.38359 1.12285 0.85225 0.79423 0.76012 0.78803 1.19123 1.18613 1.18069 1.20939 1.11511 0.96238 0.96893 0.90531 0.95344 0.89979 0.89076 0.88820 0.92896 0.95448 0.83934 0.83728 0.75225 0.74478 0.84957 0.85809 0.87633 0.90232 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 9.48 71.98 0.68 -2.66 16 2 C 0.16 3.54 2.57 44.99 0.12 3.66 16 3 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 4 C -0.11 -1.56 5.01 30.59 0.15 -1.41 16 5 C 0.06 1.00 6.67 86.30 0.58 1.58 16 6 N -0.85 -11.46 9.62 -186.71 -1.80 -13.25 16 7 N -0.72 -17.12 4.53 -457.82 -2.08 -19.20 16 8 C 0.69 25.37 8.26 179.06 1.48 26.84 16 9 O -0.62 -30.42 13.73 -3.97 -0.05 -30.47 16 10 N -0.67 -23.33 5.35 -317.33 -1.70 -25.02 16 11 C 0.18 8.02 6.26 38.09 0.24 8.26 16 12 C -0.25 -10.52 9.97 22.58 0.23 -10.29 16 13 C -0.09 -4.26 10.02 22.20 0.22 -4.04 16 14 C -0.20 -10.75 8.66 22.75 0.20 -10.55 16 15 C 0.09 5.22 5.55 -21.31 -0.12 5.11 16 16 C -0.50 -29.98 9.06 23.46 0.21 -29.77 16 17 H 0.06 3.77 7.87 -2.91 -0.02 3.75 16 18 C 0.03 1.78 5.25 85.25 0.45 2.22 16 19 N -0.83 -46.38 10.82 21.82 0.24 -46.15 16 20 Si 0.99 41.29 29.57 68.60 2.03 43.32 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 24 C -0.23 -12.96 8.39 22.85 0.19 -12.76 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.03 0.47 7.75 -2.39 -0.02 0.45 16 32 H 0.35 4.10 9.08 -89.70 -0.81 3.29 16 33 H 0.35 3.29 8.99 -89.70 -0.81 2.49 16 34 H 0.41 6.39 8.62 -92.71 -0.80 5.60 16 35 H 0.42 10.16 8.83 -92.71 -0.82 9.34 16 36 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 38 H 0.11 6.02 6.18 -2.91 -0.02 6.00 16 39 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 40 H 0.08 4.90 6.44 -2.91 -0.02 4.88 16 Total: -1.00 -76.08 334.73 -0.88 -76.97 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: -2.15 Total: 37.63 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 4.62 Total: -23.82 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -5.33 Total: -103.62 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.05 Total: -30.47 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -76.08 -0.88 -76.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415815564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.982 kcal (2) G-P(sol) polarization free energy of solvation -76.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds