Wall clock time and date at job start Mon Mar 30 2020 02:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47034 * 2 1 4 4 C 1.50702 * 109.46581 * 240.00300 * 2 1 3 5 5 O 1.21592 * 119.99253 * 239.99383 * 4 2 1 6 6 N 1.32906 * 120.00357 * 60.00342 * 4 2 1 7 7 C 1.33308 * 119.99752 * 179.97438 * 6 4 2 8 8 C 1.40980 * 126.35754 * 359.96098 * 7 6 4 9 9 C 1.35129 * 108.23722 * 180.02562 * 8 7 6 10 10 N 1.36339 * 108.89703 * 359.74862 * 9 8 7 11 11 C 1.46503 * 125.86021 * 180.24770 * 10 9 8 12 12 C 1.50698 * 109.46863 * 275.17452 * 11 10 9 13 13 H 1.07993 * 120.00191 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99525 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00295 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99709 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47280 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47003 * 120.00557 * 16 14 12 19 19 H 1.48497 * 109.47464 * 240.00651 * 16 14 12 20 20 N 1.37285 * 126.35135 * 179.97438 * 7 6 4 21 21 H 0.97001 * 126.34865 * 359.93983 * 20 7 6 22 22 C 1.52998 * 109.47201 * 120.00249 * 2 1 3 23 23 C 1.53786 * 113.61308 * 279.13473 * 22 2 1 24 24 C 1.53950 * 87.01964 * 220.04788 * 23 22 2 25 25 C 1.53779 * 113.61293 * 181.53149 * 22 2 1 26 26 H 1.09001 * 109.47034 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46604 * 299.99795 * 1 2 3 28 28 H 1.09003 * 109.47210 * 59.99845 * 1 2 3 29 29 H 1.07995 * 125.88514 * 0.02601 * 8 7 6 30 30 H 1.07995 * 125.55288 * 179.97438 * 9 8 7 31 31 H 1.08994 * 109.47059 * 35.18281 * 11 10 9 32 32 H 1.09004 * 109.46558 * 155.18279 * 11 10 9 33 33 H 0.97001 * 120.00154 * 179.97438 * 15 14 12 34 34 H 1.08999 * 112.85250 * 50.33258 * 22 2 1 35 35 H 1.08994 * 113.61346 * 334.57052 * 23 22 2 36 36 H 1.08998 * 113.61126 * 105.47210 * 23 22 2 37 37 H 1.09008 * 113.53892 * 270.81295 * 24 23 22 38 38 H 1.09001 * 113.74535 * 139.94017 * 24 23 22 39 39 H 1.09004 * 113.60814 * 254.52862 * 25 22 2 40 40 H 1.08991 * 113.61594 * 25.42901 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7314 -1.6989 -1.1189 6 7 1.7112 -0.2562 -2.4377 7 6 2.1560 -0.8844 -3.5261 8 6 2.9707 -2.0346 -3.5530 9 6 3.2013 -2.3595 -4.8442 10 7 2.5596 -1.4631 -5.6464 11 6 2.5568 -1.4707 -7.1114 12 6 3.7834 -0.7579 -7.6197 13 1 4.4941 -0.3413 -6.9214 14 6 3.9988 -0.6387 -8.9763 15 7 3.1336 -1.1464 -9.8267 16 14 5.5196 0.2442 -9.6064 17 1 6.3284 0.7198 -8.4554 18 1 6.3300 -0.6906 -10.4278 19 1 5.1097 1.4049 -10.4370 20 7 1.9057 -0.5311 -4.8289 21 1 1.3717 0.2214 -5.1281 22 6 2.0401 -0.7213 1.2492 23 6 2.0345 0.1558 2.5124 24 6 3.3857 -0.4900 2.8693 25 6 3.5734 -0.7443 1.3643 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 3.3461 -2.5648 -2.6902 30 1 3.7940 -3.1954 -5.1852 31 1 2.5602 -2.5002 -7.4693 32 1 1.6641 -0.9623 -7.4756 33 1 3.2849 -1.0622 -10.7811 34 1 1.5767 -1.6973 1.3933 35 1 2.1026 1.2233 2.3030 36 1 1.2343 -0.0894 3.2106 37 1 3.2900 -1.4026 3.4578 38 1 4.1096 0.2094 3.2875 39 1 4.0137 -1.7152 1.1371 40 1 4.0629 0.0766 0.8405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457584983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:12 Heat of formation + Delta-G solvation = 71.656310 kcal Electronic energy + Delta-G solvation = -20995.602544 eV Core-core repulsion = 17813.384204 eV Total energy + Delta-G solvation = -3182.218340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86359 -39.47037 -37.60218 -34.24864 -32.92744 -32.60789 -31.08236 -30.52434 -26.82968 -25.76752 -25.17253 -23.83567 -22.65203 -21.36710 -20.98646 -19.30685 -18.68016 -17.11383 -16.73016 -15.71625 -15.60296 -15.06559 -14.85564 -14.62585 -14.43857 -14.18254 -13.70352 -13.12639 -12.80535 -12.69510 -12.39865 -12.28982 -12.18136 -12.03118 -11.79984 -11.47729 -11.34616 -11.10684 -10.90210 -10.56193 -10.38182 -10.33843 -10.13158 -9.84241 -9.57814 -9.12871 -9.03046 -8.95159 -8.23439 -6.97038 -6.52594 -4.68871 1.66365 2.06157 3.00951 3.02787 3.12467 3.17466 4.03173 4.23316 4.39279 4.66575 4.78659 4.81405 4.85004 5.02225 5.22940 5.29905 5.46524 5.57336 5.73008 5.77281 5.84650 5.87992 5.91617 5.94790 5.98956 6.08606 6.29495 6.34179 6.38820 6.48291 6.51346 6.52321 6.63571 6.73134 6.75278 7.35101 7.45911 7.49230 7.62679 7.96923 8.36767 8.42174 9.02074 9.44955 10.49604 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034416 B = 0.003224 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.371264 B = 8681.810902 C = 8943.095103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 H 0.085 0.915 4 C 0.498 3.502 5 O -0.582 6.582 6 N -0.702 5.702 7 C 0.469 3.531 8 C -0.333 4.333 9 C 0.161 3.839 10 N -0.341 5.341 11 C 0.253 3.747 12 C -0.558 4.558 13 H 0.070 0.930 14 C 0.070 3.930 15 N -0.886 5.886 16 Si 0.910 3.090 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.279 1.279 20 N -0.467 5.467 21 H 0.445 0.555 22 C -0.087 4.087 23 C -0.137 4.137 24 C -0.148 4.148 25 C -0.120 4.120 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.184 0.816 30 H 0.188 0.812 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.272 0.728 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 0.369 13.917 14.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.097 4.097 3 H 0.103 0.897 4 C 0.284 3.716 5 O -0.464 6.464 6 N -0.467 5.467 7 C 0.219 3.781 8 C -0.365 4.365 9 C 0.016 3.984 10 N -0.126 5.126 11 C 0.137 3.863 12 C -0.597 4.597 13 H 0.089 0.911 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.736 3.264 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.205 1.205 20 N -0.189 5.189 21 H 0.292 0.708 22 C -0.106 4.106 23 C -0.175 4.175 24 C -0.185 4.185 25 C -0.157 4.157 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.201 0.799 30 H 0.205 0.795 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.850 0.618 13.400 13.713 hybrid contribution 0.884 0.375 -0.734 1.209 sum -1.965 0.993 12.665 12.855 Atomic orbital electron populations 1.21579 0.93803 1.01581 1.01768 1.20881 0.96833 0.99717 0.92244 0.89690 1.20694 0.79297 0.83304 0.88343 1.90504 1.38584 1.27965 1.89373 1.68764 1.41959 1.39484 0.96444 1.19289 0.86585 0.88206 0.84006 1.22476 1.12720 1.04029 0.97311 1.22886 0.92189 0.92751 0.90624 1.48045 1.40978 1.18016 1.05532 1.20085 0.99692 1.00587 0.65948 1.21446 1.07219 1.38605 0.92388 0.91146 1.24960 0.97374 0.94954 0.96231 1.69903 1.35502 1.43693 1.03198 0.86236 0.81770 0.79338 0.79044 1.19369 1.20366 1.20485 1.44591 1.47541 1.25355 1.01449 0.70825 1.22322 0.96719 0.98673 0.92891 1.23006 0.97396 0.99389 0.97659 1.22901 0.97530 1.00497 0.97582 1.22740 0.96314 1.02285 0.94408 0.93268 0.92951 0.91514 0.79941 0.79539 0.91334 0.93020 0.91856 0.89507 0.90359 0.91956 0.90653 0.92025 0.91097 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.08 37.16 0.34 -1.38 16 2 C -0.08 -1.13 2.53 -91.77 -0.23 -1.36 16 3 H 0.08 1.24 7.98 -51.93 -0.41 0.82 16 4 C 0.50 9.42 6.85 -11.81 -0.08 9.34 16 5 O -0.58 -11.97 11.85 5.29 0.06 -11.91 16 6 N -0.70 -13.72 10.31 -11.59 -0.12 -13.84 16 7 C 0.47 9.05 8.07 -155.18 -1.25 7.80 16 8 C -0.33 -6.17 9.51 -39.65 -0.38 -6.54 16 9 C 0.16 2.71 11.46 -16.65 -0.19 2.52 16 10 N -0.34 -6.28 3.63 -62.23 -0.23 -6.51 16 11 C 0.25 5.23 6.19 -5.19 -0.03 5.20 16 12 C -0.56 -13.21 9.39 -34.44 -0.32 -13.53 16 13 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -22.40 13.29 55.43 0.74 -21.66 16 16 Si 0.91 19.17 29.54 -169.99 -5.02 14.15 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 N -0.47 -8.33 7.37 31.32 0.23 -8.10 16 21 H 0.44 7.00 8.96 -182.55 -1.64 5.36 16 22 C -0.09 -1.18 2.68 -89.81 -0.24 -1.42 16 23 C -0.14 -1.48 7.63 -25.83 -0.20 -1.68 16 24 C -0.15 -1.61 8.09 -25.83 -0.21 -1.82 16 25 C -0.12 -1.64 6.29 -25.92 -0.16 -1.80 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 29 H 0.18 3.53 5.77 -52.49 -0.30 3.23 16 30 H 0.19 2.47 8.06 -52.49 -0.42 2.05 16 31 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.08 0.81 7.99 -51.93 -0.41 0.39 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.06 8.00 -51.93 -0.42 0.65 16 40 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 334.69 15.07 5.04 5.04 Total: -1.00 -27.67 334.69 -9.72 -37.39 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.37 Total: 8.49 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.06 Total: -3.07 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.62 Total: -50.11 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.06 Total: -11.91 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.67 -9.72 -37.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457584983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.051 kcal (2) G-P(sol) polarization free energy of solvation -27.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds