Wall clock time and date at job start Mon Mar 30 2020 02:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47034 * 2 1 4 4 C 1.50702 * 109.46581 * 240.00300 * 2 1 3 5 5 O 1.21592 * 119.99253 * 239.99383 * 4 2 1 6 6 N 1.32906 * 120.00357 * 60.00342 * 4 2 1 7 7 C 1.33308 * 119.99752 * 179.97438 * 6 4 2 8 8 C 1.40980 * 126.35754 * 359.96098 * 7 6 4 9 9 C 1.35129 * 108.23722 * 180.02562 * 8 7 6 10 10 N 1.36339 * 108.89703 * 359.74862 * 9 8 7 11 11 C 1.46503 * 125.86021 * 180.24770 * 10 9 8 12 12 C 1.50698 * 109.46863 * 275.17452 * 11 10 9 13 13 H 1.07993 * 120.00191 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99525 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00295 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99709 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47280 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47003 * 120.00557 * 16 14 12 19 19 H 1.48497 * 109.47464 * 240.00651 * 16 14 12 20 20 N 1.37285 * 126.35135 * 179.97438 * 7 6 4 21 21 H 0.97001 * 126.34865 * 359.93983 * 20 7 6 22 22 C 1.52998 * 109.47201 * 120.00249 * 2 1 3 23 23 C 1.53786 * 113.61308 * 279.13473 * 22 2 1 24 24 C 1.53950 * 87.01964 * 220.04788 * 23 22 2 25 25 C 1.53779 * 113.61293 * 181.53149 * 22 2 1 26 26 H 1.09001 * 109.47034 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46604 * 299.99795 * 1 2 3 28 28 H 1.09003 * 109.47210 * 59.99845 * 1 2 3 29 29 H 1.07995 * 125.88514 * 0.02601 * 8 7 6 30 30 H 1.07995 * 125.55288 * 179.97438 * 9 8 7 31 31 H 1.08994 * 109.47059 * 35.18281 * 11 10 9 32 32 H 1.09004 * 109.46558 * 155.18279 * 11 10 9 33 33 H 0.97001 * 120.00154 * 179.97438 * 15 14 12 34 34 H 1.08999 * 112.85250 * 50.33258 * 22 2 1 35 35 H 1.08994 * 113.61346 * 334.57052 * 23 22 2 36 36 H 1.08998 * 113.61126 * 105.47210 * 23 22 2 37 37 H 1.09008 * 113.53892 * 270.81295 * 24 23 22 38 38 H 1.09001 * 113.74535 * 139.94017 * 24 23 22 39 39 H 1.09004 * 113.60814 * 254.52862 * 25 22 2 40 40 H 1.08991 * 113.61594 * 25.42901 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7314 -1.6989 -1.1189 6 7 1.7112 -0.2562 -2.4377 7 6 2.1560 -0.8844 -3.5261 8 6 2.9707 -2.0346 -3.5530 9 6 3.2013 -2.3595 -4.8442 10 7 2.5596 -1.4631 -5.6464 11 6 2.5568 -1.4707 -7.1114 12 6 3.7834 -0.7579 -7.6197 13 1 4.4941 -0.3413 -6.9214 14 6 3.9988 -0.6387 -8.9763 15 7 3.1336 -1.1464 -9.8267 16 14 5.5196 0.2442 -9.6064 17 1 6.3284 0.7198 -8.4554 18 1 6.3300 -0.6906 -10.4278 19 1 5.1097 1.4049 -10.4370 20 7 1.9057 -0.5311 -4.8289 21 1 1.3717 0.2214 -5.1281 22 6 2.0401 -0.7213 1.2492 23 6 2.0345 0.1558 2.5124 24 6 3.3857 -0.4900 2.8693 25 6 3.5734 -0.7443 1.3643 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 3.3461 -2.5648 -2.6902 30 1 3.7940 -3.1954 -5.1852 31 1 2.5602 -2.5002 -7.4693 32 1 1.6641 -0.9623 -7.4756 33 1 3.2849 -1.0622 -10.7811 34 1 1.5767 -1.6973 1.3933 35 1 2.1026 1.2233 2.3030 36 1 1.2343 -0.0894 3.2106 37 1 3.2900 -1.4026 3.4578 38 1 4.1096 0.2094 3.2875 39 1 4.0137 -1.7152 1.1371 40 1 4.0629 0.0766 0.8405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457584983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:12 Heat of formation + Delta-G solvation = 56.673481 kcal Electronic energy + Delta-G solvation = -20996.252248 eV Core-core repulsion = 17813.384204 eV Total energy + Delta-G solvation = -3182.868044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.33290 -40.69197 -38.85393 -35.92656 -34.56680 -33.80606 -32.53195 -32.11347 -28.50206 -26.79594 -26.15476 -25.36599 -24.11883 -22.77572 -22.33858 -20.36771 -20.01478 -18.89362 -18.28525 -17.12195 -16.90865 -16.55821 -16.34761 -15.88544 -15.64125 -15.60374 -15.08629 -14.50080 -14.40273 -14.24121 -13.70810 -13.51822 -13.36085 -13.23455 -13.07086 -12.86972 -12.76057 -12.48756 -12.34216 -12.08139 -11.96255 -11.33849 -11.21670 -11.14565 -10.85816 -10.79920 -10.53782 -10.50283 -9.73148 -8.60005 -8.27061 -6.58084 0.20259 0.58972 1.36161 1.41576 1.50864 1.56533 2.29411 2.77036 2.93428 2.94412 3.46435 3.83815 3.86828 3.89839 4.00403 4.19014 4.34047 4.42589 4.45838 4.52940 4.63706 4.83378 4.84462 4.91989 4.92857 4.95033 5.03659 5.13197 5.15038 5.22490 5.27450 5.27695 5.43090 5.49863 5.51421 5.68369 5.71043 5.99505 6.13017 6.43202 6.63097 6.92544 7.16002 7.96543 8.64747 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034416 B = 0.003224 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.371264 B = 8681.810902 C = 8943.095103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 H 0.090 0.910 4 C 0.483 3.517 5 O -0.605 6.605 6 N -0.713 5.713 7 C 0.452 3.548 8 C -0.346 4.346 9 C 0.176 3.824 10 N -0.345 5.345 11 C 0.266 3.734 12 C -0.566 4.566 13 H 0.059 0.941 14 C 0.030 3.970 15 N -0.913 5.913 16 Si 0.964 3.036 17 H -0.273 1.273 18 H -0.273 1.273 19 H -0.278 1.278 20 N -0.463 5.463 21 H 0.452 0.548 22 C -0.092 4.092 23 C -0.123 4.123 24 C -0.136 4.136 25 C -0.130 4.130 26 H 0.041 0.959 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.175 0.825 30 H 0.224 0.776 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.274 0.726 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 0.867 14.907 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.094 4.094 3 H 0.108 0.892 4 C 0.270 3.730 5 O -0.489 6.489 6 N -0.477 5.477 7 C 0.203 3.797 8 C -0.378 4.378 9 C 0.031 3.969 10 N -0.130 5.130 11 C 0.149 3.851 12 C -0.604 4.604 13 H 0.077 0.923 14 C -0.172 4.172 15 N -0.551 5.551 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.198 1.198 19 H -0.204 1.204 20 N -0.186 5.186 21 H 0.300 0.700 22 C -0.111 4.111 23 C -0.160 4.160 24 C -0.174 4.174 25 C -0.168 4.168 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.192 0.808 30 H 0.240 0.760 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.794 1.125 14.400 14.711 hybrid contribution 0.871 0.194 -1.045 1.374 sum -1.924 1.319 13.354 13.556 Atomic orbital electron populations 1.21530 0.92331 1.01404 1.02715 1.20941 0.97993 0.99489 0.90978 0.89213 1.21493 0.78900 0.83307 0.89301 1.90486 1.39586 1.29070 1.89770 1.68861 1.42273 1.39787 0.96806 1.19544 0.87021 0.88756 0.84379 1.22402 1.13344 1.04209 0.97804 1.23420 0.91046 0.92725 0.89686 1.47910 1.41464 1.18518 1.05142 1.19775 0.98195 1.00220 0.66886 1.21627 1.07860 1.38544 0.92386 0.92280 1.25598 0.99517 0.95558 0.96533 1.69962 1.36810 1.44788 1.03495 0.85396 0.79019 0.78381 0.78252 1.19774 1.19831 1.20382 1.44578 1.47554 1.25531 1.00984 0.69971 1.22350 0.96208 0.98897 0.93626 1.22956 0.97811 0.99277 0.95977 1.22867 0.97924 1.01260 0.95319 1.22742 0.96427 1.00615 0.96969 0.93975 0.90019 0.92496 0.80833 0.75974 0.90974 0.93772 0.91650 0.90423 0.89471 0.90050 0.89720 0.90670 0.93365 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 9.08 71.98 0.65 -2.42 16 2 C -0.07 -2.14 2.53 -11.54 -0.03 -2.17 16 3 H 0.09 2.53 7.98 -2.39 -0.02 2.51 16 4 C 0.48 18.50 6.85 87.95 0.60 19.10 16 5 O -0.61 -25.52 11.85 -4.00 -0.05 -25.57 16 6 N -0.71 -28.11 10.31 -309.88 -3.19 -31.31 16 7 C 0.45 17.56 8.07 133.82 1.08 18.64 16 8 C -0.35 -12.79 9.51 22.23 0.21 -12.58 16 9 C 0.18 5.73 11.46 83.28 0.95 6.69 16 10 N -0.35 -12.47 3.63 -350.80 -1.27 -13.74 16 11 C 0.27 10.82 6.19 85.63 0.53 11.35 16 12 C -0.57 -26.35 9.39 25.60 0.24 -26.11 16 13 H 0.06 2.85 7.81 -2.91 -0.02 2.83 16 14 C 0.03 1.45 5.46 84.66 0.46 1.91 16 15 N -0.91 -45.54 13.29 21.45 0.28 -45.25 16 16 Si 0.96 38.69 29.54 68.60 2.03 40.71 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 19 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 20 N -0.46 -16.43 7.37 -54.81 -0.40 -16.84 16 21 H 0.45 14.19 8.96 -213.28 -1.91 12.28 16 22 C -0.09 -2.39 2.68 -10.27 -0.03 -2.42 16 23 C -0.12 -2.33 7.63 31.18 0.24 -2.09 16 24 C -0.14 -2.69 8.09 31.18 0.25 -2.44 16 25 C -0.13 -3.54 6.29 31.12 0.20 -3.34 16 26 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.53 8.05 -2.39 -0.02 1.51 16 29 H 0.17 6.84 5.77 -2.91 -0.02 6.82 16 30 H 0.22 5.38 8.06 -2.91 -0.02 5.36 16 31 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.09 1.52 7.99 -2.39 -0.02 1.51 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.49 8.00 -2.38 -0.02 1.47 16 40 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 Total: -1.00 -58.59 334.69 1.88 -56.71 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: -0.88 Total: 31.17 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.36 Total: 4.12 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -4.59 Total: -107.14 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.05 Total: -25.57 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.71 kcal Total: -58.59 1.88 -56.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457584983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.385 kcal (2) G-P(sol) polarization free energy of solvation -58.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds