Wall clock time and date at job start Mon Mar 30 2020 02:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46850 * 2 1 4 4 C 1.53003 * 109.47206 * 240.00704 * 2 1 3 5 5 C 1.50698 * 109.47463 * 63.66736 * 4 2 1 6 6 H 1.08006 * 119.99677 * 5.12832 * 5 4 2 7 7 C 1.37868 * 120.00156 * 185.13072 * 5 4 2 8 8 N 1.31523 * 120.00106 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00153 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47195 * 89.99957 * 9 7 5 11 11 H 1.48499 * 109.46955 * 210.00369 * 9 7 5 12 12 H 1.48499 * 109.46852 * 329.99932 * 9 7 5 13 13 N 1.46896 * 109.47293 * 120.00340 * 2 1 3 14 14 C 1.47112 * 110.99845 * 294.46633 * 13 2 1 15 15 C 1.52933 * 108.74189 * 164.69346 * 14 13 2 16 16 C 1.50759 * 109.81110 * 50.95187 * 15 14 13 17 17 N 1.30889 * 118.87241 * 162.90220 * 16 15 14 18 18 N 1.28221 * 122.71294 * 179.53430 * 17 16 15 19 19 C 1.46498 * 119.15271 * 179.97438 * 18 17 16 20 20 C 1.34675 * 121.69173 * 359.92285 * 18 17 16 21 21 O 1.22065 * 120.44787 * 180.30685 * 20 18 17 22 22 C 1.41130 * 119.10684 * 0.30029 * 20 18 17 23 23 C 1.36734 * 117.84849 * 359.83661 * 22 20 18 24 24 C 1.46729 * 111.00115 * 171.31117 * 13 2 1 25 25 H 1.09005 * 109.47108 * 299.99571 * 1 2 3 26 26 H 1.09001 * 109.47349 * 59.99543 * 1 2 3 27 27 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47368 * 183.67324 * 4 2 1 29 29 H 1.09000 * 109.46515 * 303.66894 * 4 2 1 30 30 H 0.96998 * 120.00186 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.59043 * 284.47805 * 14 13 2 32 32 H 1.09001 * 109.58941 * 44.92295 * 14 13 2 33 33 H 1.09002 * 109.41518 * 290.85114 * 15 14 13 34 34 H 1.09003 * 109.41596 * 171.06080 * 15 14 13 35 35 H 1.09008 * 109.47237 * 0.02562 * 19 18 17 36 36 H 1.09002 * 109.46816 * 120.00254 * 19 18 17 37 37 H 1.08996 * 109.47399 * 240.00740 * 19 18 17 38 38 H 1.07994 * 121.07423 * 179.83256 * 22 20 18 39 39 H 1.08999 * 109.33557 * 296.15311 * 24 13 2 40 40 H 1.09005 * 109.33054 * 55.63726 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6133 0.0399 -2.4781 6 1 1.1084 0.9893 -2.3770 7 6 1.8674 -0.4758 -3.7312 8 7 1.4946 0.1882 -4.8035 9 14 2.7400 -2.1182 -3.9060 10 1 1.7360 -3.2119 -3.9319 11 1 3.5200 -2.1322 -5.1696 12 1 3.6579 -2.3159 -2.7555 13 7 2.0197 -0.6925 1.1993 14 6 1.6591 0.0467 2.4191 15 6 1.8408 -0.8763 3.6248 16 6 3.2117 -1.5025 3.5870 17 7 3.6886 -2.0460 4.6780 18 7 4.8410 -2.6061 4.7266 19 6 5.2981 -3.1898 5.9902 20 6 5.6415 -2.6725 3.6457 21 8 6.7322 -3.2160 3.7161 22 6 5.2024 -2.1051 2.4303 23 6 3.9703 -1.5126 2.4104 24 6 3.4716 -0.8939 1.1343 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1280 -0.7785 -1.2171 29 1 1.6239 -1.7280 -1.2829 30 1 1.6737 -0.1744 -5.6852 31 1 2.3069 0.9169 2.5239 32 1 0.6192 0.3676 2.3580 33 1 1.0837 -1.6601 3.5985 34 1 1.7313 -0.2990 4.5429 35 1 4.5324 -3.0494 6.7533 36 1 5.4823 -4.2553 5.8525 37 1 6.2192 -2.6994 6.3048 38 1 5.8196 -2.1379 1.5448 39 1 3.7076 -1.5520 0.2980 40 1 3.9628 0.0674 0.9834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515655920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:00 Heat of formation + Delta-G solvation = 12.301916 kcal Electronic energy + Delta-G solvation = -21777.032140 eV Core-core repulsion = 18592.240000 eV Total energy + Delta-G solvation = -3184.792139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.18122 -40.22818 -38.77029 -36.69922 -34.95082 -34.02550 -33.04758 -30.60286 -30.13685 -28.71334 -26.13812 -25.88839 -24.83715 -23.56926 -21.88349 -20.77724 -19.46509 -18.96117 -18.27174 -17.82928 -17.24682 -16.62346 -16.23679 -15.87008 -15.54313 -15.42643 -15.08307 -14.68976 -14.54025 -14.36939 -14.04577 -13.85652 -13.55433 -13.48807 -13.22039 -13.10816 -12.73947 -12.63788 -12.54909 -12.25783 -11.97573 -11.77830 -11.70089 -11.37365 -11.06435 -10.95910 -10.83739 -10.69533 -9.51997 -9.23011 -8.24995 -6.26523 -0.60599 0.47030 1.23571 1.37235 1.39361 1.48997 2.24441 2.37997 2.77089 3.03552 3.11471 3.38097 3.50070 3.71607 4.20487 4.24124 4.25761 4.31392 4.33519 4.38827 4.47607 4.50756 4.60735 4.64719 4.68889 4.74835 4.83028 4.91184 4.97900 5.04661 5.14191 5.23284 5.26385 5.33521 5.45484 5.58565 5.72848 6.07668 6.22023 6.36627 6.47358 6.81296 7.06647 7.37297 8.91285 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022924 B = 0.004721 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.153326 B = 5930.138665 C = 6930.064114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.102 3.898 3 H 0.031 0.969 4 C -0.006 4.006 5 C -0.515 4.515 6 H 0.041 0.959 7 C 0.009 3.991 8 N -0.951 5.951 9 Si 0.939 3.061 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.248 1.248 13 N -0.535 5.535 14 C 0.043 3.957 15 C -0.037 4.037 16 C 0.080 3.920 17 N -0.227 5.227 18 N -0.347 5.347 19 C 0.079 3.921 20 C 0.469 3.531 21 O -0.579 6.579 22 C -0.216 4.216 23 C -0.006 4.006 24 C 0.082 3.918 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.264 0.736 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.166 0.834 39 H 0.094 0.906 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -3.331 22.720 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.005 4.005 3 H 0.049 0.951 4 C -0.044 4.044 5 C -0.553 4.553 6 H 0.060 0.940 7 C -0.187 4.187 8 N -0.592 5.592 9 Si 0.763 3.237 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.172 1.172 13 N -0.260 5.260 14 C -0.085 4.085 15 C -0.076 4.076 16 C -0.090 4.090 17 N -0.051 5.051 18 N -0.165 5.165 19 C -0.060 4.060 20 C 0.270 3.730 21 O -0.463 6.463 22 C -0.246 4.246 23 C -0.013 4.013 24 C -0.046 4.046 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.183 0.817 39 H 0.112 0.888 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.989 -4.320 23.573 24.048 hybrid contribution 1.313 0.230 -1.898 2.320 sum 3.302 -4.090 21.674 22.303 Atomic orbital electron populations 1.21667 0.93428 1.01923 1.01152 1.21398 0.96444 0.94524 0.88135 0.95067 1.19647 0.96079 0.96050 0.92592 1.21364 1.37051 1.06181 0.90729 0.94036 1.25838 0.96321 1.00910 0.95671 1.70049 1.49558 1.41007 0.98582 0.85829 0.79556 0.80297 0.77982 1.19571 1.21574 1.17193 1.62381 1.10675 1.49840 1.03124 1.22409 1.03379 0.94514 0.88169 1.20391 0.88425 0.99363 0.99429 1.22057 0.99455 1.00266 0.87236 1.70961 0.99832 1.06565 1.27773 1.46787 1.11452 1.44839 1.13470 1.22373 1.02507 0.99473 0.81628 1.18106 0.85957 0.83168 0.85818 1.90936 1.22075 1.48259 1.85005 1.22683 0.98609 1.04160 0.99183 1.20838 0.92520 0.91715 0.96214 1.21083 0.89541 1.00380 0.93589 0.90809 0.93765 0.92677 0.96303 0.96176 0.92717 0.93701 0.87203 0.87814 0.86492 0.85682 0.89478 0.89253 0.81685 0.88763 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.96 8.94 71.98 0.64 -3.32 16 2 C 0.10 3.51 2.10 44.92 0.09 3.61 16 3 H 0.03 1.12 8.13 -2.39 -0.02 1.10 16 4 C -0.01 -0.26 3.13 29.85 0.09 -0.17 16 5 C -0.51 -27.85 8.85 25.60 0.23 -27.62 16 6 H 0.04 2.45 7.41 -2.91 -0.02 2.43 16 7 C 0.01 0.53 5.47 84.65 0.46 0.99 16 8 N -0.95 -58.29 13.96 21.45 0.30 -57.99 16 9 Si 0.94 43.65 27.37 68.60 1.88 45.52 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.25 -10.69 6.69 99.48 0.67 -10.03 16 13 N -0.54 -14.70 4.54 -876.27 -3.98 -18.68 16 14 C 0.04 0.84 5.42 86.24 0.47 1.31 16 15 C -0.04 -0.60 6.21 29.84 0.19 -0.41 16 16 C 0.08 1.75 6.75 43.14 0.29 2.04 16 17 N -0.23 -4.96 10.72 -47.23 -0.51 -5.46 16 18 N -0.35 -8.15 3.62 -494.00 -1.79 -9.93 16 19 C 0.08 1.22 10.22 127.77 1.31 2.53 16 20 C 0.47 13.71 7.48 84.97 0.64 14.34 16 21 O -0.58 -20.27 17.10 -5.53 -0.09 -20.37 16 22 C -0.22 -5.90 9.78 22.63 0.22 -5.68 16 23 C -0.01 -0.16 5.78 -19.91 -0.12 -0.28 16 24 C 0.08 2.26 4.50 85.47 0.38 2.64 16 25 H 0.07 1.78 6.28 -2.38 -0.01 1.76 16 26 H 0.04 1.67 6.97 -2.39 -0.02 1.65 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 28 H 0.02 0.81 5.59 -2.39 -0.01 0.79 16 29 H 0.02 0.88 7.29 -2.39 -0.02 0.87 16 30 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.04 0.85 8.04 -2.39 -0.02 0.83 16 32 H 0.11 1.84 5.94 -2.39 -0.01 1.83 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.12 1.21 8.05 -2.38 -0.02 1.19 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.17 4.26 8.06 -2.91 -0.02 4.23 16 39 H 0.09 2.88 6.35 -2.39 -0.02 2.87 16 40 H 0.07 1.80 8.13 -2.38 -0.02 1.78 16 Total: -1.00 -69.97 318.09 1.71 -68.26 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.00 Total: 8.66 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.90 Total: -10.01 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -5.97 Total: -92.07 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.09 Total: -20.37 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.52 kcal Total: -69.97 1.71 -68.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515655920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.566 kcal (2) G-P(sol) polarization free energy of solvation -69.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds