Wall clock time and date at job start Mon Mar 30 2020 01:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47028 * 2 1 4 4 O 1.42898 * 109.47451 * 180.02562 * 3 2 1 5 5 C 1.35593 * 117.00622 * 180.02562 * 4 3 2 6 6 N 1.31172 * 120.46174 * 0.25061 * 5 4 3 7 7 C 1.33639 * 121.14318 * 180.28612 * 6 5 4 8 8 C 1.34517 * 122.12044 * 359.72013 * 7 6 5 9 9 N 1.36994 * 120.83228 * 359.97438 * 8 7 6 10 10 H 0.96999 * 120.63475 * 180.02562 * 9 8 7 11 11 C 1.37663 * 118.73551 * 0.02562 * 9 8 7 12 12 N 1.31314 * 120.94931 * 179.97438 * 11 9 8 13 13 C 1.46495 * 120.00166 * 5.72557 * 12 11 9 14 14 C 1.53005 * 109.47171 * 119.25836 * 13 12 11 15 15 C 1.50696 * 115.54733 * 35.63427 * 14 13 12 16 16 H 1.08004 * 119.99797 * 264.70346 * 15 14 13 17 17 C 1.37879 * 120.00307 * 84.70858 * 15 14 13 18 18 N 1.31520 * 119.99916 * 351.00115 * 17 15 14 19 19 Si 1.86803 * 120.00211 * 171.00798 * 17 15 14 20 20 H 1.48498 * 109.47164 * 59.99267 * 19 17 15 21 21 H 1.48498 * 109.47110 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46823 * 299.99547 * 19 17 15 23 23 C 1.52997 * 117.49928 * 249.92507 * 14 13 12 24 24 C 1.52999 * 60.00073 * 252.51256 * 23 14 13 25 25 H 1.09001 * 109.46583 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47181 * 300.00103 * 1 2 3 27 27 H 1.08996 * 109.46913 * 60.00391 * 1 2 3 28 28 H 1.09003 * 109.47283 * 240.00194 * 2 1 3 29 29 H 1.09000 * 109.47456 * 120.00362 * 2 1 3 30 30 H 1.09001 * 109.47659 * 59.99943 * 3 2 1 31 31 H 1.09006 * 109.47323 * 300.00022 * 3 2 1 32 32 H 1.07999 * 118.93858 * 179.73009 * 7 6 5 33 33 H 1.07998 * 119.58711 * 179.97438 * 8 7 6 34 34 H 1.08991 * 109.47587 * 359.25538 * 13 12 11 35 35 H 1.09008 * 109.47424 * 239.25757 * 13 12 11 36 36 H 0.96994 * 120.00029 * 185.03131 * 18 17 15 37 37 H 1.08998 * 117.49729 * 0.02562 * 23 14 13 38 38 H 1.09000 * 117.50023 * 145.01493 * 23 14 13 39 39 H 1.09000 * 117.49472 * 252.51157 * 24 23 14 40 40 H 1.08999 * 117.52061 * 107.48097 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0846 2.6507 -0.0001 6 7 3.3791 3.7565 0.0058 7 6 3.9716 4.9544 0.0006 8 6 5.3099 5.0903 -0.0053 9 7 6.1273 3.9910 -0.0057 10 1 7.0920 4.0923 -0.0095 11 6 5.5536 2.7396 -0.0004 12 7 6.2958 1.6564 -0.0011 13 6 7.7517 1.7659 0.1192 14 6 8.2159 1.0339 1.3801 15 6 7.4515 -0.2188 1.7228 16 1 6.6327 -0.1764 2.4259 17 6 7.7973 -1.4190 1.1389 18 7 8.6710 -1.4446 0.1562 19 14 7.0248 -3.0087 1.7435 20 1 5.5512 -2.9387 1.5742 21 1 7.5595 -4.1492 0.9571 22 1 7.3494 -3.2018 3.1797 23 6 8.7348 1.8852 2.5406 24 6 9.7115 1.0591 1.7013 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.3561 5.8418 0.0013 33 1 5.7455 6.0786 -0.0098 34 1 8.0329 2.8169 0.1850 35 1 8.2234 1.3178 -0.7555 36 1 8.8600 -2.2777 -0.3031 37 1 8.7452 2.9668 2.4060 38 1 8.5232 1.5395 3.5524 39 1 10.1425 0.1697 2.1611 40 1 10.3649 1.5967 1.0143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527995536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:18 Heat of formation + Delta-G solvation = 56.696131 kcal Electronic energy + Delta-G solvation = -21607.231786 eV Core-core repulsion = 18424.364724 eV Total energy + Delta-G solvation = -3182.867062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.38413 -38.29605 -36.86477 -34.88965 -33.93699 -32.49925 -31.77049 -29.11489 -26.92132 -26.18468 -25.19832 -23.37212 -21.92441 -21.24316 -21.10895 -19.13299 -18.89450 -17.50610 -16.83170 -16.17255 -15.76625 -14.74841 -14.63805 -14.51525 -14.41472 -14.10269 -13.77763 -13.43453 -13.07662 -12.76835 -12.45072 -12.19404 -12.03711 -11.66702 -11.60788 -11.01248 -10.94620 -10.83633 -10.77343 -10.49818 -10.42854 -10.16398 -9.85410 -9.47908 -9.18823 -9.00480 -8.46849 -8.29614 -8.04539 -6.68726 -5.87452 -3.87403 1.27934 2.35541 2.75725 3.43187 3.45925 3.50617 3.66098 4.00298 4.54570 4.59532 4.69474 5.03177 5.03825 5.14490 5.27567 5.33724 5.41735 5.53286 5.55512 5.67324 5.72932 5.84759 5.98435 6.00637 6.15610 6.18344 6.21518 6.33842 6.37496 6.58176 6.67236 6.95266 6.99193 7.07662 7.33054 7.39717 7.48264 7.61364 8.06168 8.21813 8.49148 8.76606 9.07880 9.74622 11.22735 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.007015 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.848444 B = 3990.417594 C = 5932.211114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.071 3.929 4 O -0.271 6.271 5 C 0.374 3.626 6 N -0.523 5.523 7 C -0.040 4.040 8 C 0.049 3.951 9 N -0.642 5.642 10 H 0.418 0.582 11 C 0.317 3.683 12 N -0.460 5.460 13 C 0.092 3.908 14 C 0.055 3.945 15 C -0.465 4.465 16 H 0.056 0.944 17 C 0.076 3.924 18 N -0.885 5.885 19 Si 0.887 3.113 20 H -0.275 1.275 21 H -0.289 1.289 22 H -0.280 1.280 23 C -0.216 4.216 24 C -0.157 4.157 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.000 1.000 35 H 0.087 0.913 36 H 0.258 0.742 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.824 10.889 -1.788 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.004 4.004 4 O -0.172 6.172 5 C 0.161 3.839 6 N -0.256 5.256 7 C -0.177 4.177 8 C -0.078 4.078 9 N -0.272 5.272 10 H 0.259 0.741 11 C 0.040 3.960 12 N -0.183 5.183 13 C -0.038 4.038 14 C 0.054 3.946 15 C -0.503 4.503 16 H 0.075 0.925 17 C -0.127 4.127 18 N -0.523 5.523 19 Si 0.715 3.285 20 H -0.200 1.200 21 H -0.215 1.215 22 H -0.206 1.206 23 C -0.254 4.254 24 C -0.195 4.195 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.172 0.828 33 H 0.170 0.830 34 H 0.017 0.983 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.455 9.618 -1.926 14.336 hybrid contribution 1.202 0.311 0.291 1.275 sum -9.253 9.929 -1.635 13.670 Atomic orbital electron populations 1.21656 0.94523 1.02133 1.01961 1.21531 0.95613 0.95253 1.04185 1.22719 0.77656 0.97873 1.02201 1.86354 1.21824 1.23204 1.85789 1.20797 0.85604 0.85203 0.92335 1.67584 1.38960 0.97884 1.21191 1.20837 0.90934 0.94138 1.11765 1.22190 0.92699 0.91914 1.00991 1.42726 1.10055 1.04190 1.70242 0.74147 1.20914 0.91900 0.81839 1.01343 1.73473 1.07826 1.21178 1.15809 1.21717 0.86459 0.94151 1.01471 1.18795 0.92519 0.94650 0.88636 1.20071 1.15160 0.89604 1.25480 0.92544 1.24847 0.94507 0.98538 0.94764 1.69949 1.34157 1.26717 1.21475 0.86730 0.79924 0.83181 0.78616 1.20024 1.21533 1.20575 1.23093 1.09341 0.95048 0.97876 1.22553 0.94360 1.00284 1.02276 0.91991 0.92494 0.92557 0.90732 0.90576 0.91688 0.91785 0.82820 0.83024 0.98251 0.89470 0.93261 0.92343 0.90393 0.89857 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.04 16 2 C -0.13 -1.65 6.30 -26.73 -0.17 -1.82 16 3 C 0.07 1.03 5.34 37.15 0.20 1.23 16 4 O -0.27 -5.20 10.02 -18.47 -0.19 -5.39 16 5 C 0.37 7.05 7.77 -14.21 -0.11 6.94 16 6 N -0.52 -8.56 9.35 -11.79 -0.11 -8.67 16 7 C -0.04 -0.53 11.00 -18.08 -0.20 -0.73 16 8 C 0.05 0.59 11.18 -16.56 -0.19 0.41 16 9 N -0.64 -9.85 5.36 -10.55 -0.06 -9.91 16 10 H 0.42 5.86 6.37 -40.82 -0.26 5.60 16 11 C 0.32 6.23 7.66 -153.94 -1.18 5.05 16 12 N -0.46 -10.71 9.69 -58.57 -0.57 -11.28 16 13 C 0.09 2.10 6.46 -4.04 -0.03 2.08 16 14 C 0.05 1.38 1.77 -155.66 -0.28 1.10 16 15 C -0.47 -13.15 8.05 -34.44 -0.28 -13.43 16 16 H 0.06 1.65 7.83 -52.48 -0.41 1.24 16 17 C 0.08 2.15 5.38 -17.82 -0.10 2.05 16 18 N -0.89 -25.73 13.02 55.43 0.72 -25.01 16 19 Si 0.89 22.18 29.55 -169.99 -5.02 17.16 16 20 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 23 C -0.22 -4.77 9.88 -26.73 -0.26 -5.03 16 24 C -0.16 -3.67 9.56 -26.73 -0.26 -3.92 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 31 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 32 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.00 -0.01 5.26 -51.93 -0.27 -0.28 16 35 H 0.09 2.16 8.14 -51.92 -0.42 1.74 16 36 H 0.26 7.24 8.32 -40.82 -0.34 6.90 16 37 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 38 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 39 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 340.05 15.07 5.12 5.12 Total: -1.00 -32.19 340.05 -8.56 -40.74 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.99 Total: 4.33 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.47 Total: -7.11 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.01 Total: -54.87 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.19 Total: -5.39 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.19 -8.56 -40.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527995536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.441 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds