Wall clock time and date at job start Mon Mar 30 2020 02:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47363 * 2 1 4 4 C 1.50694 * 109.47013 * 239.99770 * 2 1 3 5 5 O 1.21281 * 120.00287 * 246.80043 * 4 2 1 6 6 N 1.34777 * 120.00208 * 66.80592 * 4 2 1 7 7 C 1.46492 * 120.00310 * 184.41786 * 6 4 2 8 8 C 1.53001 * 109.47455 * 175.21413 * 7 6 4 9 9 C 1.50704 * 115.54549 * 65.23395 * 8 7 6 10 10 H 1.08004 * 120.00020 * 270.76340 * 9 8 7 11 11 C 1.37877 * 119.99995 * 90.76905 * 9 8 7 12 12 N 1.31512 * 120.00178 * 181.64980 * 11 9 8 13 13 Si 1.86799 * 119.99908 * 1.64329 * 11 9 8 14 14 H 1.48493 * 109.47034 * 93.04226 * 13 11 9 15 15 H 1.48501 * 109.47019 * 213.04009 * 13 11 9 16 16 H 1.48496 * 109.47129 * 333.04112 * 13 11 9 17 17 C 1.53000 * 117.50045 * 279.56764 * 8 7 6 18 18 C 1.53001 * 117.50526 * 210.90304 * 8 7 6 19 19 C 1.50699 * 109.46931 * 119.99801 * 2 1 3 20 20 C 1.39875 * 126.04130 * 59.97844 * 19 2 1 21 21 N 1.30830 * 108.20478 * 180.02562 * 20 19 2 22 22 N 1.40087 * 108.20768 * 0.02562 * 21 20 19 23 23 C 1.46502 * 126.04055 * 180.02562 * 22 21 20 24 24 C 1.34952 * 107.92312 * 359.97438 * 22 21 20 25 25 H 1.09004 * 109.47048 * 294.97524 * 1 2 3 26 26 H 1.08995 * 109.47104 * 54.96958 * 1 2 3 27 27 H 1.09001 * 109.47036 * 174.96803 * 1 2 3 28 28 H 0.97006 * 119.99755 * 4.42365 * 6 4 2 29 29 H 1.09001 * 109.47585 * 295.21494 * 7 6 4 30 30 H 1.09004 * 109.47167 * 55.22137 * 7 6 4 31 31 H 0.96993 * 120.00498 * 179.97438 * 12 11 9 32 32 H 1.08993 * 117.49720 * 359.97438 * 17 8 7 33 33 H 1.09005 * 117.49880 * 145.01464 * 17 8 7 34 34 H 1.08990 * 117.50241 * 214.97697 * 18 8 7 35 35 H 1.09004 * 117.49390 * 359.97438 * 18 8 7 36 36 H 1.08006 * 125.89713 * 359.97438 * 20 19 2 37 37 H 1.09001 * 109.46768 * 269.99629 * 23 22 21 38 38 H 1.09000 * 109.47011 * 29.99765 * 23 22 21 39 39 H 1.09000 * 109.47056 * 150.00160 * 23 22 21 40 40 H 1.07998 * 126.12709 * 180.26353 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6245 -1.7634 -1.1234 6 7 1.8235 -0.1757 -2.4498 7 6 2.2253 -0.9117 -3.6510 8 6 1.7721 -0.1445 -4.8947 9 6 2.4275 1.1960 -5.1062 10 1 1.9924 2.0843 -4.6723 11 6 3.5824 1.2885 -5.8535 12 7 4.1723 2.4533 -6.0110 13 14 4.3095 -0.2408 -6.6422 14 1 3.7953 -0.3748 -8.0288 15 1 5.7898 -0.1261 -6.6722 16 1 3.9215 -1.4371 -5.8526 17 6 0.3102 -0.2913 -5.3217 18 6 1.4176 -0.9616 -6.1388 19 6 2.0323 -0.7104 1.2305 20 6 1.7731 -2.0407 1.5762 21 7 2.3768 -2.2937 2.7090 22 7 3.0398 -1.1305 3.1210 23 6 3.8392 -0.9796 4.3394 24 6 2.8130 -0.1737 2.1967 25 1 -0.3633 0.4339 0.9316 26 1 -0.3633 0.5899 -0.8415 27 1 -0.3633 -1.0237 -0.0901 28 1 1.4073 0.6967 -2.5320 29 1 3.3099 -1.0191 -3.6656 30 1 1.7625 -1.8985 -3.6443 31 1 4.9850 2.5184 -6.5364 32 1 -0.3285 -0.9348 -4.7167 33 1 -0.1775 0.5816 -5.7558 34 1 1.6580 -0.5294 -7.1101 35 1 1.5077 -2.0458 -6.0713 36 1 1.1768 -2.7383 1.0068 37 1 3.1982 -0.6458 5.1554 38 1 4.2894 -1.9376 4.5995 39 1 4.6246 -0.2431 4.1697 40 1 3.1906 0.8378 2.2214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562393196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:04 Heat of formation + Delta-G solvation = 63.044391 kcal Electronic energy + Delta-G solvation = -21362.675474 eV Core-core repulsion = 18180.083693 eV Total energy + Delta-G solvation = -3182.591781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.21491 -39.11764 -37.06785 -34.24225 -33.41656 -32.43802 -32.11980 -29.42885 -26.82367 -26.47719 -25.34217 -23.66961 -21.78701 -21.08866 -20.63358 -19.51883 -18.93740 -17.07001 -16.37782 -16.18719 -15.40714 -15.21913 -14.98414 -14.70625 -14.21732 -13.87239 -13.79991 -13.10093 -12.92849 -12.88895 -12.74374 -12.59508 -12.49104 -12.17642 -11.87003 -11.58139 -11.38724 -11.16501 -10.88549 -10.47798 -10.41625 -10.16923 -9.63366 -9.38805 -9.19818 -9.15742 -8.66229 -8.56469 -8.28605 -8.23377 -6.16751 -4.21309 1.93668 2.55181 2.89089 3.21863 3.27988 3.39210 3.45309 3.88500 4.39730 4.47443 4.81924 4.88926 4.96959 5.00604 5.11423 5.14915 5.21520 5.28766 5.39223 5.59728 5.69748 5.77476 5.79183 5.98511 6.03730 6.07298 6.11983 6.27389 6.31294 6.42407 6.54271 6.70443 6.74773 6.99779 7.02870 7.08880 7.20081 7.67754 7.77585 8.25521 8.40082 8.83085 8.86434 9.46713 10.94516 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.004148 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.897791 B = 6749.396658 C = 7081.608605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.032 4.032 3 H 0.098 0.902 4 C 0.510 3.490 5 O -0.549 6.549 6 N -0.704 5.704 7 C 0.159 3.841 8 C -0.014 4.014 9 C -0.491 4.491 10 H 0.079 0.921 11 C 0.080 3.920 12 N -0.896 5.896 13 Si 0.880 3.120 14 H -0.280 1.280 15 H -0.295 1.295 16 H -0.256 1.256 17 C -0.179 4.179 18 C -0.194 4.194 19 C -0.210 4.210 20 C 0.085 3.915 21 N -0.307 5.307 22 N -0.383 5.383 23 C 0.105 3.895 24 C 0.056 3.944 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.404 0.596 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.265 0.735 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.178 0.822 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 -3.235 15.729 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.055 4.055 3 H 0.116 0.884 4 C 0.295 3.705 5 O -0.427 6.427 6 N -0.353 5.353 7 C 0.035 3.965 8 C -0.015 4.015 9 C -0.528 4.528 10 H 0.097 0.903 11 C -0.123 4.123 12 N -0.532 5.532 13 Si 0.708 3.292 14 H -0.206 1.206 15 H -0.222 1.222 16 H -0.180 1.180 17 C -0.216 4.216 18 C -0.232 4.232 19 C -0.222 4.222 20 C -0.101 4.101 21 N -0.128 5.128 22 N -0.165 5.165 23 C -0.036 4.036 24 C -0.090 4.090 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.238 0.762 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.195 0.805 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.461 -4.758 16.751 17.976 hybrid contribution 0.329 0.380 -1.318 1.411 sum -4.131 -4.378 15.433 16.565 Atomic orbital electron populations 1.21715 0.92539 1.02631 1.02432 1.19519 0.96896 0.99380 0.89685 0.88402 1.20478 0.79623 0.85873 0.84533 1.90654 1.41615 1.23768 1.86711 1.45859 1.61712 1.22578 1.05164 1.21050 0.99322 0.92667 0.83430 1.19633 0.94410 0.96570 0.90902 1.20190 1.08846 0.90371 1.33389 0.90340 1.24977 0.96112 0.95789 0.95459 1.69879 1.19351 1.24019 1.39977 0.86837 0.77588 0.84657 0.80088 1.20600 1.22236 1.18011 1.22872 0.92305 1.02045 1.04378 1.22934 1.05727 0.97306 0.97244 1.19503 1.08301 0.95482 0.98876 1.23608 0.98085 0.95656 0.92784 1.77327 1.14028 1.05698 1.15789 1.48341 1.40718 1.08388 1.19099 1.21776 0.94295 1.03903 0.83655 1.22249 1.00044 0.95720 0.90973 0.91778 0.91615 0.92242 0.76154 0.92209 0.93765 0.92500 0.90893 0.89438 0.89295 0.90688 0.80479 0.91077 0.89539 0.89685 0.81064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.02 37.16 0.34 -1.12 16 2 C -0.03 -0.42 3.08 -92.93 -0.29 -0.71 16 3 H 0.10 1.12 8.11 -51.93 -0.42 0.70 16 4 C 0.51 8.91 7.05 -10.99 -0.08 8.84 16 5 O -0.55 -11.63 15.27 5.56 0.08 -11.54 16 6 N -0.70 -12.72 5.46 -60.30 -0.33 -13.05 16 7 C 0.16 3.32 5.24 -4.05 -0.02 3.30 16 8 C -0.01 -0.30 0.85 -155.66 -0.13 -0.44 16 9 C -0.49 -12.71 9.22 -34.44 -0.32 -13.02 16 10 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 11 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 12 N -0.90 -26.27 13.96 55.43 0.77 -25.50 16 13 Si 0.88 21.41 24.74 -169.99 -4.21 17.21 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.26 -6.00 6.00 56.52 0.34 -5.66 16 17 C -0.18 -3.38 9.96 -26.69 -0.27 -3.64 16 18 C -0.19 -3.98 7.19 -26.69 -0.19 -4.17 16 19 C -0.21 -2.92 4.43 -105.05 -0.47 -3.38 16 20 C 0.09 1.28 10.72 -17.37 -0.19 1.09 16 21 N -0.31 -4.68 12.58 30.63 0.39 -4.30 16 22 N -0.38 -4.76 4.01 -68.16 -0.27 -5.04 16 23 C 0.11 0.79 11.47 59.85 0.69 1.48 16 24 C 0.06 0.67 11.38 -17.22 -0.20 0.48 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.40 6.74 8.34 -40.82 -0.34 6.40 16 29 H 0.06 1.40 7.57 -51.93 -0.39 1.01 16 30 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.09 1.91 6.67 -51.93 -0.35 1.57 16 35 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.18 2.50 8.06 -52.48 -0.42 2.08 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -33.33 335.87 -5.91 -39.24 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.19 Total: 7.13 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -1.22 Total: -9.21 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.56 Total: -47.88 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.21 Total: 17.21 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.33 -5.91 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562393196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.289 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds