Wall clock time and date at job start Mon Mar 30 2020 02:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47363 * 2 1 4 4 C 1.50694 * 109.47013 * 239.99770 * 2 1 3 5 5 O 1.21281 * 120.00287 * 246.80043 * 4 2 1 6 6 N 1.34777 * 120.00208 * 66.80592 * 4 2 1 7 7 C 1.46492 * 120.00310 * 184.41786 * 6 4 2 8 8 C 1.53001 * 109.47455 * 175.21413 * 7 6 4 9 9 C 1.50704 * 115.54549 * 65.23395 * 8 7 6 10 10 H 1.08004 * 120.00020 * 270.76340 * 9 8 7 11 11 C 1.37877 * 119.99995 * 90.76905 * 9 8 7 12 12 N 1.31512 * 120.00178 * 181.64980 * 11 9 8 13 13 Si 1.86799 * 119.99908 * 1.64329 * 11 9 8 14 14 H 1.48493 * 109.47034 * 93.04226 * 13 11 9 15 15 H 1.48501 * 109.47019 * 213.04009 * 13 11 9 16 16 H 1.48496 * 109.47129 * 333.04112 * 13 11 9 17 17 C 1.53000 * 117.50045 * 279.56764 * 8 7 6 18 18 C 1.53001 * 117.50526 * 210.90304 * 8 7 6 19 19 C 1.50699 * 109.46931 * 119.99801 * 2 1 3 20 20 C 1.39875 * 126.04130 * 59.97844 * 19 2 1 21 21 N 1.30830 * 108.20478 * 180.02562 * 20 19 2 22 22 N 1.40087 * 108.20768 * 0.02562 * 21 20 19 23 23 C 1.46502 * 126.04055 * 180.02562 * 22 21 20 24 24 C 1.34952 * 107.92312 * 359.97438 * 22 21 20 25 25 H 1.09004 * 109.47048 * 294.97524 * 1 2 3 26 26 H 1.08995 * 109.47104 * 54.96958 * 1 2 3 27 27 H 1.09001 * 109.47036 * 174.96803 * 1 2 3 28 28 H 0.97006 * 119.99755 * 4.42365 * 6 4 2 29 29 H 1.09001 * 109.47585 * 295.21494 * 7 6 4 30 30 H 1.09004 * 109.47167 * 55.22137 * 7 6 4 31 31 H 0.96993 * 120.00498 * 179.97438 * 12 11 9 32 32 H 1.08993 * 117.49720 * 359.97438 * 17 8 7 33 33 H 1.09005 * 117.49880 * 145.01464 * 17 8 7 34 34 H 1.08990 * 117.50241 * 214.97697 * 18 8 7 35 35 H 1.09004 * 117.49390 * 359.97438 * 18 8 7 36 36 H 1.08006 * 125.89713 * 359.97438 * 20 19 2 37 37 H 1.09001 * 109.46768 * 269.99629 * 23 22 21 38 38 H 1.09000 * 109.47011 * 29.99765 * 23 22 21 39 39 H 1.09000 * 109.47056 * 150.00160 * 23 22 21 40 40 H 1.07998 * 126.12709 * 180.26353 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6245 -1.7634 -1.1234 6 7 1.8235 -0.1757 -2.4498 7 6 2.2253 -0.9117 -3.6510 8 6 1.7721 -0.1445 -4.8947 9 6 2.4275 1.1960 -5.1062 10 1 1.9924 2.0843 -4.6723 11 6 3.5824 1.2885 -5.8535 12 7 4.1723 2.4533 -6.0110 13 14 4.3095 -0.2408 -6.6422 14 1 3.7953 -0.3748 -8.0288 15 1 5.7898 -0.1261 -6.6722 16 1 3.9215 -1.4371 -5.8526 17 6 0.3102 -0.2913 -5.3217 18 6 1.4176 -0.9616 -6.1388 19 6 2.0323 -0.7104 1.2305 20 6 1.7731 -2.0407 1.5762 21 7 2.3768 -2.2937 2.7090 22 7 3.0398 -1.1305 3.1210 23 6 3.8392 -0.9796 4.3394 24 6 2.8130 -0.1737 2.1967 25 1 -0.3633 0.4339 0.9316 26 1 -0.3633 0.5899 -0.8415 27 1 -0.3633 -1.0237 -0.0901 28 1 1.4073 0.6967 -2.5320 29 1 3.3099 -1.0191 -3.6656 30 1 1.7625 -1.8985 -3.6443 31 1 4.9850 2.5184 -6.5364 32 1 -0.3285 -0.9348 -4.7167 33 1 -0.1775 0.5816 -5.7558 34 1 1.6580 -0.5294 -7.1101 35 1 1.5077 -2.0458 -6.0713 36 1 1.1768 -2.7383 1.0068 37 1 3.1982 -0.6458 5.1554 38 1 4.2894 -1.9376 4.5995 39 1 4.6246 -0.2431 4.1697 40 1 3.1906 0.8378 2.2214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562393196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:03 Heat of formation + Delta-G solvation = 39.751078 kcal Electronic energy + Delta-G solvation = -21363.685548 eV Core-core repulsion = 18180.083693 eV Total energy + Delta-G solvation = -3183.601854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.20654 -40.52765 -38.70839 -35.29760 -34.88369 -34.18084 -33.38299 -30.37423 -28.43117 -27.33285 -27.15482 -24.79538 -23.37635 -22.11098 -21.72844 -21.14425 -20.33047 -18.53428 -17.84014 -17.43799 -16.93355 -16.51670 -16.22457 -16.10110 -15.47900 -15.13090 -14.93849 -14.71388 -14.46124 -14.24781 -13.86612 -13.70427 -13.52372 -13.34676 -13.07982 -13.03627 -12.74353 -12.46409 -12.40372 -12.15532 -11.94982 -11.51764 -11.41246 -10.96618 -10.76639 -10.61640 -10.32285 -10.21590 -9.79591 -9.27759 -8.28380 -6.33838 0.99034 1.33424 1.40833 1.51319 1.73446 1.80812 1.87215 2.37614 2.52409 3.07558 3.29458 3.64857 3.91048 4.05780 4.06658 4.27037 4.34026 4.39486 4.43484 4.44603 4.47536 4.54689 4.58299 4.70490 4.86214 4.87652 4.89333 4.93763 5.09280 5.12423 5.23563 5.33298 5.40529 5.51278 5.68355 5.71218 5.73054 6.20250 6.30908 6.73947 6.77240 6.86410 7.36594 7.47855 8.86030 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.004148 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.897791 B = 6749.396658 C = 7081.608605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.021 4.021 3 H 0.119 0.881 4 C 0.508 3.492 5 O -0.589 6.589 6 N -0.702 5.702 7 C 0.168 3.832 8 C -0.036 4.036 9 C -0.476 4.476 10 H 0.051 0.949 11 C 0.027 3.973 12 N -0.943 5.943 13 Si 0.928 3.072 14 H -0.270 1.270 15 H -0.306 1.306 16 H -0.242 1.242 17 C -0.149 4.149 18 C -0.198 4.198 19 C -0.234 4.234 20 C 0.067 3.933 21 N -0.342 5.342 22 N -0.383 5.383 23 C 0.095 3.905 24 C 0.064 3.936 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.411 0.589 29 H 0.028 0.972 30 H 0.054 0.946 31 H 0.264 0.736 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.172 0.828 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.377 -3.389 16.852 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.043 4.043 3 H 0.137 0.863 4 C 0.296 3.704 5 O -0.470 6.470 6 N -0.352 5.352 7 C 0.044 3.956 8 C -0.037 4.037 9 C -0.514 4.514 10 H 0.069 0.931 11 C -0.171 4.171 12 N -0.583 5.583 13 Si 0.755 3.245 14 H -0.195 1.195 15 H -0.234 1.234 16 H -0.165 1.165 17 C -0.186 4.186 18 C -0.236 4.236 19 C -0.246 4.246 20 C -0.118 4.118 21 N -0.164 5.164 22 N -0.165 5.165 23 C -0.045 4.045 24 C -0.083 4.083 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.247 0.753 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.189 0.811 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -5.490 -4.921 17.893 19.353 hybrid contribution 0.630 0.473 -1.561 1.748 sum -4.860 -4.448 16.333 17.611 Atomic orbital electron populations 1.21701 0.90638 1.02538 1.03833 1.19514 0.98312 0.99517 0.86998 0.86275 1.21291 0.78461 0.85393 0.85291 1.90636 1.43357 1.25692 1.87269 1.45841 1.61742 1.22761 1.04839 1.20752 0.97424 0.93332 0.84117 1.19462 0.96914 0.95168 0.92201 1.20384 1.08099 0.91557 1.31376 0.93107 1.25674 0.96965 0.97865 0.96609 1.70001 1.20265 1.26032 1.41986 0.86061 0.76207 0.82350 0.79926 1.19538 1.23369 1.16540 1.22898 0.90889 1.01982 1.02866 1.23006 1.06251 0.98353 0.95967 1.19680 1.09778 0.95327 0.99847 1.23669 0.98570 0.96461 0.93084 1.77242 1.15230 1.07607 1.16324 1.48751 1.40079 1.07579 1.20104 1.22170 0.94942 1.04841 0.82570 1.22838 0.98522 0.96958 0.89971 0.89907 0.90697 0.93038 0.75325 0.95395 0.92806 0.92738 0.87899 0.89414 0.90454 0.88621 0.81083 0.89090 0.89654 0.86960 0.77381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.02 71.98 0.65 -1.84 16 2 C -0.02 -0.51 3.08 -12.29 -0.04 -0.55 16 3 H 0.12 2.39 8.11 -2.39 -0.02 2.37 16 4 C 0.51 17.28 7.05 87.65 0.62 17.90 16 5 O -0.59 -24.90 15.27 -3.03 -0.05 -24.95 16 6 N -0.70 -24.57 5.46 -463.08 -2.53 -27.10 16 7 C 0.17 6.84 5.24 86.38 0.45 7.29 16 8 C -0.04 -1.52 0.85 -52.93 -0.05 -1.57 16 9 C -0.48 -24.70 9.22 25.60 0.24 -24.46 16 10 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 11 C 0.03 1.49 5.47 84.66 0.46 1.96 16 12 N -0.94 -56.60 13.96 21.45 0.30 -56.30 16 13 Si 0.93 44.14 24.74 68.60 1.70 45.83 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 16 H -0.24 -10.86 6.00 99.48 0.60 -10.26 16 17 C -0.15 -5.19 9.96 30.62 0.30 -4.88 16 18 C -0.20 -7.60 7.19 30.62 0.22 -7.38 16 19 C -0.23 -6.17 4.43 -20.14 -0.09 -6.26 16 20 C 0.07 2.02 10.72 85.24 0.91 2.93 16 21 N -0.34 -10.29 12.58 -57.02 -0.72 -11.00 16 22 N -0.38 -8.81 4.01 -369.55 -1.48 -10.29 16 23 C 0.09 1.18 11.47 127.77 1.47 2.65 16 24 C 0.06 1.39 11.38 83.54 0.95 2.34 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.41 13.14 8.34 -92.70 -0.77 12.37 16 29 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 30 H 0.05 2.08 8.09 -2.39 -0.02 2.06 16 31 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 34 H 0.08 3.16 6.67 -2.39 -0.02 3.15 16 35 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 36 H 0.17 5.02 8.06 -2.91 -0.02 5.00 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -73.61 335.87 3.47 -70.14 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.15 Total: 25.55 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 6.10 Total: -11.88 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -4.43 Total: -104.69 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.95 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.70 Total: 45.83 kcal Total: -73.61 3.47 -70.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562393196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.894 kcal (2) G-P(sol) polarization free energy of solvation -73.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds