Wall clock time and date at job start Mon Mar 30 2020 02:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 120.00268 * 2 1 4 4 N 1.46496 * 109.47574 * 124.99480 * 3 2 1 5 5 C 1.46498 * 120.00316 * 275.49770 * 4 3 2 6 6 C 1.50698 * 109.46894 * 264.14685 * 5 4 3 7 7 H 1.08004 * 120.00211 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99965 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00197 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99991 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47089 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47055 * 120.00445 * 10 8 6 13 13 H 1.48500 * 109.47285 * 240.00581 * 10 8 6 14 14 C 1.34776 * 119.99719 * 95.49038 * 4 3 2 15 15 O 1.21283 * 120.00166 * 3.83044 * 14 4 3 16 16 C 1.50709 * 119.99825 * 183.82762 * 14 4 3 17 17 H 1.08992 * 109.46958 * 318.56974 * 16 14 4 18 18 C 1.52998 * 109.46845 * 78.57427 * 16 14 4 19 19 C 1.53002 * 109.47039 * 198.56915 * 16 14 4 20 20 C 1.50695 * 109.47011 * 175.00110 * 19 16 14 21 21 C 1.34665 * 126.59061 * 84.97745 * 20 19 16 22 22 N 1.34139 * 108.02043 * 180.02562 * 21 20 19 23 23 C 1.30493 * 109.25483 * 359.97438 * 22 21 20 24 24 N 1.35043 * 108.70059 * 0.02562 * 23 22 21 25 25 H 0.97010 * 126.39730 * 179.97438 * 24 23 22 26 26 H 1.08005 * 120.00163 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.00263 * 180.02562 * 1 2 3 28 28 H 1.08005 * 120.00163 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46865 * 4.99712 * 3 2 1 30 30 H 1.09001 * 109.46987 * 244.99735 * 3 2 1 31 31 H 1.08997 * 109.46995 * 24.14678 * 5 4 3 32 32 H 1.08993 * 109.47448 * 144.14606 * 5 4 3 33 33 H 0.96996 * 120.00492 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47372 * 304.82149 * 18 16 14 35 35 H 1.08994 * 109.47742 * 64.82389 * 18 16 14 36 36 H 1.09001 * 109.47121 * 184.82758 * 18 16 14 37 37 H 1.08999 * 109.46777 * 55.00321 * 19 16 14 38 38 H 1.09000 * 109.47465 * 295.00534 * 19 16 14 39 39 H 1.08000 * 125.99377 * 0.02562 * 21 20 19 40 40 H 1.08002 * 125.65021 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5258 1.7519 2.4547 6 6 2.8325 3.2136 2.6554 7 1 3.3263 3.7739 1.8751 8 6 2.4819 3.8360 3.8347 9 7 1.8803 3.1539 4.7846 10 14 2.8628 5.6477 4.0838 11 1 3.5391 6.1822 2.8746 12 1 1.5986 6.3923 4.3132 13 1 3.7531 5.8091 5.2613 14 6 4.2800 0.9703 0.9550 15 8 4.6844 0.6894 -0.1534 16 6 5.2158 0.9149 2.1351 17 1 5.0373 1.7746 2.7809 18 6 4.9690 -0.3740 2.9215 19 6 6.6632 0.9409 1.6398 20 6 7.5970 1.0095 2.8206 21 6 8.0522 -0.0302 3.5454 22 7 8.8563 0.4529 4.5042 23 6 8.9171 1.7523 4.4006 24 7 8.1453 2.1405 3.3627 25 1 8.0055 3.0508 3.0581 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 1.4498 1.5932 2.5268 32 1 3.0317 1.1658 3.2218 33 1 1.6340 3.5916 5.6144 34 1 3.9171 -0.4334 3.2010 35 1 5.2296 -1.2327 2.3029 36 1 5.5844 -0.3742 3.8212 37 1 6.8145 1.8145 1.0057 38 1 6.8675 0.0364 1.0669 39 1 7.8119 -1.0705 3.3832 40 1 9.4891 2.4086 5.0397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565314466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:49 Heat of formation + Delta-G solvation = 12.582258 kcal Electronic energy + Delta-G solvation = -21888.138795 eV Core-core repulsion = 18703.358812 eV Total energy + Delta-G solvation = -3184.779983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.94152 -40.98306 -37.22110 -36.09790 -34.99871 -33.84202 -33.31781 -30.74489 -29.39685 -27.56837 -27.21947 -25.13119 -23.59172 -22.27578 -21.70091 -20.95451 -19.65489 -18.84002 -18.57736 -17.70907 -17.30755 -16.37716 -16.21212 -16.03100 -15.64586 -15.42128 -14.85821 -14.61967 -14.42141 -14.18998 -14.13941 -13.59339 -13.54848 -13.28120 -13.16680 -12.83165 -12.80487 -12.61179 -12.27423 -12.20433 -12.15063 -11.88861 -11.63932 -10.96477 -10.90356 -10.73403 -10.59611 -10.22837 -9.47982 -9.24370 -8.21819 -6.36438 1.13853 1.29598 1.36824 1.40971 1.50483 1.77053 2.23460 2.31510 2.36065 2.56213 3.08348 3.59873 3.92085 3.94085 4.05088 4.07461 4.17501 4.26622 4.44677 4.50084 4.62705 4.66374 4.78779 4.80456 4.82300 4.89506 4.93611 5.03102 5.14611 5.19780 5.33981 5.42366 5.60896 5.67105 5.73884 5.83064 5.93644 6.05869 6.54847 6.59140 6.80853 7.16337 7.28704 7.40100 8.83714 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.007168 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.595811 B = 3905.478687 C = 5649.606695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.179 4.179 3 C 0.137 3.863 4 N -0.595 5.595 5 C 0.251 3.749 6 C -0.545 4.545 7 H 0.052 0.948 8 C 0.024 3.976 9 N -0.917 5.917 10 Si 0.953 3.047 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.277 1.277 14 C 0.521 3.479 15 O -0.592 6.592 16 C -0.097 4.097 17 H 0.088 0.912 18 C -0.130 4.130 19 C -0.013 4.013 20 C -0.017 4.017 21 C -0.038 4.038 22 N -0.534 5.534 23 C 0.186 3.814 24 N -0.562 5.562 25 H 0.430 0.570 26 H 0.101 0.899 27 H 0.118 0.882 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.018 0.982 32 H 0.036 0.964 33 H 0.267 0.733 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.175 0.825 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.295 -2.316 -3.497 7.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.198 4.198 3 C 0.015 3.985 4 N -0.324 5.324 5 C 0.131 3.869 6 C -0.584 4.584 7 H 0.070 0.930 8 C -0.177 4.177 9 N -0.556 5.556 10 Si 0.779 3.221 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.202 1.202 14 C 0.310 3.690 15 O -0.475 6.475 16 C -0.119 4.119 17 H 0.106 0.894 18 C -0.188 4.188 19 C -0.052 4.052 20 C -0.133 4.133 21 C -0.186 4.186 22 N -0.253 5.253 23 C -0.098 4.098 24 N -0.166 5.166 25 H 0.270 0.730 26 H 0.120 0.880 27 H 0.136 0.864 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.192 0.808 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 6.816 -2.942 -3.276 8.115 hybrid contribution -0.720 1.921 -0.293 2.072 sum 6.096 -1.022 -3.570 7.138 Atomic orbital electron populations 1.24017 0.95102 1.02990 0.98472 1.23200 0.96729 0.98034 1.01825 1.20517 0.92104 0.95954 0.89921 1.48205 1.08933 1.63613 1.11606 1.19145 0.94887 0.94224 0.78686 1.21679 1.39604 0.95855 1.01212 0.93005 1.25622 0.94586 1.02059 0.95452 1.70015 1.40820 1.37955 1.06800 0.85577 0.78115 0.80268 0.78162 1.19321 1.20634 1.20238 1.20811 0.82785 0.75326 0.90062 1.90562 1.77025 1.52785 1.27148 1.21158 0.93570 1.01837 0.95334 0.89401 1.21707 1.01842 0.95087 1.00138 1.19711 0.89040 1.04217 0.92211 1.21192 1.03420 0.87284 1.01453 1.22271 1.01074 0.99626 0.95579 1.70246 1.21341 1.09336 1.24420 1.25656 0.98590 0.92934 0.92610 1.43353 1.37056 1.10020 1.26140 0.72984 0.88032 0.86358 0.87936 0.90550 0.90245 0.96419 0.94606 0.92372 0.93246 0.91151 0.90869 0.91269 0.88555 0.80812 0.74099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.51 14.32 67.79 0.97 -3.54 16 2 C -0.18 -5.68 9.84 25.65 0.25 -5.43 16 3 C 0.14 5.04 5.91 85.63 0.51 5.54 16 4 N -0.59 -24.57 2.46 -830.51 -2.04 -26.61 16 5 C 0.25 11.75 4.80 85.63 0.41 12.16 16 6 C -0.54 -27.49 8.55 25.60 0.22 -27.27 16 7 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 8 C 0.02 1.20 5.46 84.66 0.46 1.66 16 9 N -0.92 -49.46 13.29 21.45 0.28 -49.18 16 10 Si 0.95 40.38 29.54 68.60 2.03 42.41 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 14 C 0.52 20.89 6.79 87.66 0.60 21.48 16 15 O -0.59 -25.34 15.60 -3.04 -0.05 -25.38 16 16 C -0.10 -3.43 1.87 -11.54 -0.02 -3.45 16 17 H 0.09 3.54 6.57 -2.39 -0.02 3.53 16 18 C -0.13 -4.18 8.41 71.98 0.61 -3.57 16 19 C -0.01 -0.38 4.61 29.85 0.14 -0.24 16 20 C -0.02 -0.48 6.09 40.95 0.25 -0.23 16 21 C -0.04 -1.12 10.20 83.52 0.85 -0.27 16 22 N -0.53 -15.94 11.25 -200.31 -2.25 -18.20 16 23 C 0.19 4.34 13.04 180.26 2.35 6.69 16 24 N -0.56 -13.38 6.15 -186.50 -1.15 -14.53 16 25 H 0.43 8.11 8.96 -92.70 -0.83 7.28 16 26 H 0.10 2.64 7.84 -2.91 -0.02 2.61 16 27 H 0.12 2.59 8.06 -2.91 -0.02 2.57 16 28 H 0.10 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.08 2.78 7.76 -2.39 -0.02 2.76 16 30 H 0.08 2.93 7.22 -2.39 -0.02 2.92 16 31 H 0.02 0.89 8.03 -2.39 -0.02 0.87 16 32 H 0.04 1.74 5.05 -2.39 -0.01 1.73 16 33 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 34 H 0.05 1.73 6.44 -2.39 -0.02 1.72 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.07 2.26 6.51 -2.39 -0.02 2.24 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.10 2.78 8.07 -2.39 -0.02 2.76 16 39 H 0.17 4.53 8.06 -2.91 -0.02 4.51 16 40 H 0.24 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -63.17 336.59 4.62 -58.54 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.21 Total: 29.40 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 7.59 Total: 3.54 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -5.16 Total: -108.51 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -63.17 4.62 -58.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565314466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.127 kcal (2) G-P(sol) polarization free energy of solvation -63.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds