Wall clock time and date at job start Mon Mar 30 2020 02:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47496 * 2 1 4 4 C 1.52999 * 109.46848 * 239.99596 * 2 1 3 5 5 C 1.50701 * 109.47161 * 65.00258 * 4 2 1 6 6 O 1.21288 * 119.99744 * 5.87709 * 5 4 2 7 7 N 1.34774 * 120.00364 * 185.87367 * 5 4 2 8 8 C 1.46499 * 120.00248 * 184.70435 * 7 5 4 9 9 C 1.52995 * 109.47303 * 184.70698 * 8 7 5 10 10 C 1.50700 * 115.55340 * 294.73599 * 9 8 7 11 11 H 1.08009 * 119.99700 * 121.62584 * 10 9 8 12 12 C 1.37868 * 120.00139 * 301.35898 * 10 9 8 13 13 N 1.31514 * 120.00466 * 173.18422 * 12 10 9 14 14 Si 1.86798 * 119.99966 * 353.17952 * 12 10 9 15 15 H 1.48500 * 109.47268 * 94.24387 * 14 12 10 16 16 H 1.48502 * 109.47415 * 214.24310 * 14 12 10 17 17 H 1.48499 * 109.47133 * 334.24628 * 14 12 10 18 18 C 1.53006 * 117.49551 * 80.40883 * 9 8 7 19 19 C 1.52999 * 117.49882 * 149.06500 * 9 8 7 20 20 N 1.46507 * 109.46991 * 120.00245 * 2 1 3 21 21 C 1.36882 * 126.39351 * 239.70958 * 20 2 1 22 22 C 1.34666 * 106.81662 * 179.84433 * 21 20 2 23 23 N 1.34125 * 108.01833 * 0.42093 * 22 21 20 24 24 C 1.30496 * 109.26148 * 359.73385 * 23 22 21 25 25 H 1.09008 * 109.46488 * 300.00283 * 1 2 3 26 26 H 1.09000 * 109.46945 * 59.99772 * 1 2 3 27 27 H 1.09002 * 109.47102 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47777 * 305.00360 * 4 2 1 29 29 H 1.09009 * 109.47332 * 185.00118 * 4 2 1 30 30 H 0.97002 * 119.99922 * 4.71084 * 7 5 4 31 31 H 1.09003 * 109.46690 * 64.71025 * 8 7 5 32 32 H 1.08997 * 109.47635 * 304.71578 * 8 7 5 33 33 H 0.96994 * 120.00588 * 179.97438 * 13 12 10 34 34 H 1.08996 * 117.49506 * 215.00352 * 18 9 8 35 35 H 1.08997 * 117.50190 * 0.02562 * 18 9 8 36 36 H 1.09002 * 117.50157 * 359.97438 * 19 9 8 37 37 H 1.08999 * 117.50085 * 144.97393 * 19 9 8 38 38 H 1.08008 * 126.58940 * 359.97438 * 21 20 2 39 39 H 1.08002 * 125.99443 * 180.12351 * 22 21 20 40 40 H 1.07992 * 125.65767 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 8 1.1057 1.1390 -2.3611 7 7 1.8800 -0.4494 -3.7026 8 6 1.5874 0.3500 -4.8949 9 6 1.8356 -0.4928 -6.1475 10 6 3.2665 -0.9037 -6.3814 11 1 3.5231 -1.9506 -6.4512 12 6 4.2471 0.0566 -6.5117 13 7 5.5112 -0.2994 -6.5813 14 14 3.7801 1.8636 -6.5895 15 1 3.8571 2.4538 -5.2290 16 1 4.7171 2.5786 -7.4929 17 1 2.3950 1.9951 -7.1084 18 6 0.7407 -1.4764 -6.5656 19 6 0.9746 -0.2002 -7.3779 20 7 2.0183 -0.6907 1.1962 21 6 2.8130 -0.1570 2.1746 22 6 3.0185 -1.1295 3.0832 23 7 2.3747 -2.2297 2.6661 24 6 1.7734 -1.9744 1.5365 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6053 -1.7199 -1.2952 29 1 3.1263 -0.7996 -1.2056 30 1 2.2454 -1.3431 -3.7956 31 1 2.2350 1.2265 -4.9126 32 1 0.5453 0.6687 -4.8721 33 1 6.2010 0.3762 -6.6734 34 1 1.0554 -2.4207 -7.0097 35 1 -0.1566 -1.5227 -5.9485 36 1 0.2309 0.5924 -7.2949 37 1 1.4431 -0.3045 -8.3565 38 1 3.1991 0.8510 2.2119 39 1 3.6035 -1.0407 3.9868 40 1 1.1788 -2.6738 0.9677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569814959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:01 Heat of formation + Delta-G solvation = 46.135258 kcal Electronic energy + Delta-G solvation = -21388.770069 eV Core-core repulsion = 18205.445054 eV Total energy + Delta-G solvation = -3183.325016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.15707 -39.61640 -37.27956 -35.64062 -33.60790 -32.30309 -31.07991 -29.34659 -28.57944 -26.60963 -25.12589 -23.31781 -21.71731 -21.41268 -20.61569 -19.86386 -19.19646 -17.58663 -16.98432 -16.07840 -15.77710 -15.49290 -15.16864 -14.90997 -14.53483 -13.98689 -13.79821 -13.72293 -13.43364 -13.15333 -13.00399 -12.88262 -12.53794 -12.29164 -11.92164 -11.61116 -11.40808 -11.15972 -10.78039 -10.67181 -10.36780 -10.02675 -9.84559 -9.72446 -9.51358 -9.30304 -8.95785 -8.59720 -8.57189 -8.44876 -6.28270 -4.30450 2.00555 2.60328 2.83127 3.13437 3.18140 3.29961 3.34642 3.60257 4.27827 4.30708 4.60575 4.64705 4.68645 4.81759 4.89973 5.11503 5.18489 5.26751 5.33122 5.39981 5.55856 5.57302 5.64230 5.69235 5.83876 5.99372 6.03258 6.09241 6.25537 6.33725 6.38567 6.60090 6.67788 6.79943 6.91421 7.02642 7.12197 7.56090 7.94441 8.02271 8.30721 8.51596 8.73835 9.35031 10.82676 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022975 B = 0.004205 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.448934 B = 6656.863641 C = 6990.768786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 H 0.110 0.890 4 C -0.153 4.153 5 C 0.512 3.488 6 O -0.557 6.557 7 N -0.696 5.696 8 C 0.152 3.848 9 C -0.017 4.017 10 C -0.492 4.492 11 H 0.079 0.921 12 C 0.084 3.916 13 N -0.889 5.889 14 Si 0.869 3.131 15 H -0.279 1.279 16 H -0.291 1.291 17 H -0.252 1.252 18 C -0.180 4.180 19 C -0.188 4.188 20 N -0.452 5.452 21 C -0.054 4.054 22 C -0.035 4.035 23 N -0.499 5.499 24 C 0.181 3.819 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.409 0.591 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.267 0.733 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.172 0.828 39 H 0.167 0.833 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.168 -0.076 11.911 14.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.128 0.872 4 C -0.194 4.194 5 C 0.297 3.703 6 O -0.437 6.437 7 N -0.345 5.345 8 C 0.029 3.971 9 C -0.018 4.018 10 C -0.529 4.529 11 H 0.097 0.903 12 C -0.120 4.120 13 N -0.525 5.525 14 Si 0.697 3.303 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.176 1.176 18 C -0.217 4.217 19 C -0.227 4.227 20 N -0.134 5.134 21 C -0.188 4.188 22 C -0.183 4.183 23 N -0.217 5.217 24 C -0.101 4.101 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.245 0.755 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.189 0.811 39 H 0.184 0.816 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.393 0.079 12.224 14.829 hybrid contribution 0.265 1.390 -0.660 1.562 sum -8.128 1.469 11.564 14.211 Atomic orbital electron populations 1.22245 0.92477 1.02932 1.04443 1.21186 0.96104 0.97085 0.81123 0.87155 1.22001 1.04207 1.00771 0.92416 1.20124 0.79076 0.86406 0.84661 1.90660 1.43923 1.22230 1.86919 1.45858 1.63590 1.20125 1.04935 1.21138 0.98532 0.93581 0.83889 1.19588 0.93519 0.97904 0.90780 1.20254 0.87188 0.94946 1.50492 0.90328 1.24915 0.94567 0.98913 0.93617 1.69885 0.99684 1.34407 1.48561 0.87026 0.79729 0.85500 0.78061 1.20530 1.21806 1.17563 1.22784 0.99879 0.94402 1.04667 1.23068 1.03658 0.98119 0.97818 1.45815 1.37592 1.11478 1.18557 1.22789 1.02197 1.01455 0.92309 1.22271 1.04918 0.89705 1.01413 1.70288 1.12572 1.28157 1.10696 1.24869 1.03898 0.85435 0.95894 0.91980 0.88589 0.92115 0.88228 0.87783 0.75534 0.92515 0.92905 0.92342 0.89593 0.90880 0.91134 0.89231 0.81078 0.81564 0.78272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.99 37.16 0.33 -1.34 16 2 C 0.15 1.61 2.70 -67.93 -0.18 1.43 16 3 H 0.11 1.29 7.81 -51.93 -0.41 0.88 16 4 C -0.15 -1.76 5.18 -27.88 -0.14 -1.91 16 5 C 0.51 8.02 7.44 -10.99 -0.08 7.94 16 6 O -0.56 -10.19 14.19 5.55 0.08 -10.11 16 7 N -0.70 -11.96 5.48 -60.30 -0.33 -12.29 16 8 C 0.15 3.03 5.08 -4.04 -0.02 3.01 16 9 C -0.02 -0.35 0.85 -155.66 -0.13 -0.48 16 10 C -0.49 -12.36 9.19 -34.44 -0.32 -12.68 16 11 H 0.08 2.15 8.06 -52.48 -0.42 1.73 16 12 C 0.08 2.23 5.46 -17.82 -0.10 2.14 16 13 N -0.89 -25.41 13.96 55.43 0.77 -24.64 16 14 Si 0.87 20.65 24.69 -169.99 -4.20 16.45 16 15 H -0.28 -6.73 6.96 56.52 0.39 -6.33 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.25 -5.65 6.12 56.52 0.35 -5.31 16 18 C -0.18 -3.25 9.96 -26.69 -0.27 -3.52 16 19 C -0.19 -3.65 8.70 -26.69 -0.23 -3.88 16 20 N -0.45 -5.00 2.62 -111.46 -0.29 -5.30 16 21 C -0.05 -0.59 11.54 -16.56 -0.19 -0.78 16 22 C -0.04 -0.42 11.87 -17.81 -0.21 -0.63 16 23 N -0.50 -6.79 11.25 -14.67 -0.17 -6.96 16 24 C 0.18 2.09 11.65 -90.38 -1.05 1.04 16 25 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.10 1.16 6.17 -51.93 -0.32 0.84 16 27 H 0.06 0.54 7.95 -51.93 -0.41 0.12 16 28 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 29 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 30 H 0.41 6.59 8.34 -40.82 -0.34 6.25 16 31 H 0.06 1.27 4.25 -51.93 -0.22 1.05 16 32 H 0.05 1.01 8.06 -51.93 -0.42 0.59 16 33 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 38 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.17 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -30.70 331.00 -7.70 -38.40 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.96 Total: 9.12 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -2.59 Total: -9.66 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -0.01 Total: -49.19 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.20 Total: 16.45 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.70 -7.70 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569814959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.539 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds