Wall clock time and date at job start Mon Mar 30 2020 02:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47496 * 2 1 4 4 C 1.52999 * 109.46848 * 239.99596 * 2 1 3 5 5 C 1.50701 * 109.47161 * 65.00258 * 4 2 1 6 6 O 1.21288 * 119.99744 * 5.87709 * 5 4 2 7 7 N 1.34774 * 120.00364 * 185.87367 * 5 4 2 8 8 C 1.46499 * 120.00248 * 184.70435 * 7 5 4 9 9 C 1.52995 * 109.47303 * 184.70698 * 8 7 5 10 10 C 1.50700 * 115.55340 * 294.73599 * 9 8 7 11 11 H 1.08009 * 119.99700 * 121.62584 * 10 9 8 12 12 C 1.37868 * 120.00139 * 301.35898 * 10 9 8 13 13 N 1.31514 * 120.00466 * 173.18422 * 12 10 9 14 14 Si 1.86798 * 119.99966 * 353.17952 * 12 10 9 15 15 H 1.48500 * 109.47268 * 94.24387 * 14 12 10 16 16 H 1.48502 * 109.47415 * 214.24310 * 14 12 10 17 17 H 1.48499 * 109.47133 * 334.24628 * 14 12 10 18 18 C 1.53006 * 117.49551 * 80.40883 * 9 8 7 19 19 C 1.52999 * 117.49882 * 149.06500 * 9 8 7 20 20 N 1.46507 * 109.46991 * 120.00245 * 2 1 3 21 21 C 1.36882 * 126.39351 * 239.70958 * 20 2 1 22 22 C 1.34666 * 106.81662 * 179.84433 * 21 20 2 23 23 N 1.34125 * 108.01833 * 0.42093 * 22 21 20 24 24 C 1.30496 * 109.26148 * 359.73385 * 23 22 21 25 25 H 1.09008 * 109.46488 * 300.00283 * 1 2 3 26 26 H 1.09000 * 109.46945 * 59.99772 * 1 2 3 27 27 H 1.09002 * 109.47102 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47777 * 305.00360 * 4 2 1 29 29 H 1.09009 * 109.47332 * 185.00118 * 4 2 1 30 30 H 0.97002 * 119.99922 * 4.71084 * 7 5 4 31 31 H 1.09003 * 109.46690 * 64.71025 * 8 7 5 32 32 H 1.08997 * 109.47635 * 304.71578 * 8 7 5 33 33 H 0.96994 * 120.00588 * 179.97438 * 13 12 10 34 34 H 1.08996 * 117.49506 * 215.00352 * 18 9 8 35 35 H 1.08997 * 117.50190 * 0.02562 * 18 9 8 36 36 H 1.09002 * 117.50157 * 359.97438 * 19 9 8 37 37 H 1.08999 * 117.50085 * 144.97393 * 19 9 8 38 38 H 1.08008 * 126.58940 * 359.97438 * 21 20 2 39 39 H 1.08002 * 125.99443 * 180.12351 * 22 21 20 40 40 H 1.07992 * 125.65767 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 8 1.1057 1.1390 -2.3611 7 7 1.8800 -0.4494 -3.7026 8 6 1.5874 0.3500 -4.8949 9 6 1.8356 -0.4928 -6.1475 10 6 3.2665 -0.9037 -6.3814 11 1 3.5231 -1.9506 -6.4512 12 6 4.2471 0.0566 -6.5117 13 7 5.5112 -0.2994 -6.5813 14 14 3.7801 1.8636 -6.5895 15 1 3.8571 2.4538 -5.2290 16 1 4.7171 2.5786 -7.4929 17 1 2.3950 1.9951 -7.1084 18 6 0.7407 -1.4764 -6.5656 19 6 0.9746 -0.2002 -7.3779 20 7 2.0183 -0.6907 1.1962 21 6 2.8130 -0.1570 2.1746 22 6 3.0185 -1.1295 3.0832 23 7 2.3747 -2.2297 2.6661 24 6 1.7734 -1.9744 1.5365 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6053 -1.7199 -1.2952 29 1 3.1263 -0.7996 -1.2056 30 1 2.2454 -1.3431 -3.7956 31 1 2.2350 1.2265 -4.9126 32 1 0.5453 0.6687 -4.8721 33 1 6.2010 0.3762 -6.6734 34 1 1.0554 -2.4207 -7.0097 35 1 -0.1566 -1.5227 -5.9485 36 1 0.2309 0.5924 -7.2949 37 1 1.4431 -0.3045 -8.3565 38 1 3.1991 0.8510 2.2119 39 1 3.6035 -1.0407 3.9868 40 1 1.1788 -2.6738 0.9677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569814959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:00 Heat of formation + Delta-G solvation = 27.238202 kcal Electronic energy + Delta-G solvation = -21389.589507 eV Core-core repulsion = 18205.445054 eV Total energy + Delta-G solvation = -3184.144453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.01730 -40.89630 -38.80895 -36.62136 -35.00302 -34.30523 -32.00876 -30.23208 -29.62107 -28.19401 -26.76194 -24.26489 -23.20462 -22.28692 -21.65694 -21.22199 -20.65127 -18.70663 -18.48746 -17.35840 -17.18185 -16.78922 -16.52403 -16.05122 -15.62569 -15.32034 -14.94225 -14.80307 -14.72410 -14.40997 -14.21872 -14.14975 -13.88990 -13.73470 -13.03415 -12.90782 -12.61484 -12.49784 -12.26767 -12.17254 -12.08198 -11.50246 -11.12705 -10.97308 -10.91631 -10.71922 -10.60521 -10.34272 -9.90870 -9.42708 -8.33861 -6.36279 1.16120 1.28017 1.36165 1.45133 1.60479 1.69718 2.25464 2.30876 2.38736 2.96685 3.37001 3.41354 3.70899 3.83577 3.89352 4.01081 4.04264 4.17537 4.28552 4.42007 4.47072 4.51764 4.53022 4.60616 4.72842 4.76804 4.84118 4.88279 4.92571 5.06663 5.17404 5.25927 5.40401 5.49722 5.56466 5.67127 5.84657 6.28377 6.28991 6.62297 6.72891 7.16477 7.24454 7.31479 8.80645 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022975 B = 0.004205 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.448934 B = 6656.863641 C = 6990.768786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.155 3.845 3 H 0.101 0.899 4 C -0.143 4.143 5 C 0.513 3.487 6 O -0.582 6.582 7 N -0.701 5.701 8 C 0.159 3.841 9 C -0.041 4.041 10 C -0.476 4.476 11 H 0.045 0.955 12 C 0.036 3.964 13 N -0.939 5.939 14 Si 0.919 3.081 15 H -0.287 1.287 16 H -0.299 1.299 17 H -0.229 1.229 18 C -0.153 4.153 19 C -0.187 4.187 20 N -0.452 5.452 21 C -0.058 4.058 22 C -0.053 4.053 23 N -0.535 5.535 24 C 0.179 3.821 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.413 0.587 31 H 0.030 0.970 32 H 0.066 0.934 33 H 0.264 0.736 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.192 0.808 39 H 0.182 0.818 40 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.250 -0.089 12.501 16.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.052 3.948 3 H 0.119 0.881 4 C -0.183 4.183 5 C 0.300 3.700 6 O -0.464 6.464 7 N -0.350 5.350 8 C 0.035 3.965 9 C -0.043 4.043 10 C -0.514 4.514 11 H 0.064 0.936 12 C -0.163 4.163 13 N -0.578 5.578 14 Si 0.746 3.254 15 H -0.214 1.214 16 H -0.226 1.226 17 H -0.152 1.152 18 C -0.190 4.190 19 C -0.225 4.225 20 N -0.134 5.134 21 C -0.191 4.191 22 C -0.200 4.200 23 N -0.254 5.254 24 C -0.103 4.103 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.147 0.853 29 H 0.122 0.878 30 H 0.250 0.750 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.209 0.791 39 H 0.199 0.801 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -10.501 0.057 12.822 16.573 hybrid contribution 0.887 1.315 -0.822 1.787 sum -9.613 1.372 12.000 15.437 Atomic orbital electron populations 1.22163 0.91742 1.03864 1.03657 1.21076 0.96549 0.96429 0.80775 0.88119 1.21960 1.04305 1.01582 0.90474 1.20713 0.77978 0.86178 0.85100 1.90653 1.44960 1.23502 1.87287 1.45865 1.64098 1.20185 1.04896 1.20899 0.98607 0.92723 0.84308 1.19447 0.91824 1.00708 0.92281 1.20403 0.89565 0.93194 1.48193 0.93639 1.25539 0.94438 1.02299 0.94066 1.70007 1.00805 1.35371 1.51598 0.86230 0.80347 0.81494 0.77337 1.21410 1.22646 1.15150 1.22829 0.99243 0.93578 1.03370 1.23107 1.03244 0.99712 0.96485 1.45821 1.37615 1.11481 1.18486 1.23184 1.01773 1.02262 0.91924 1.22641 1.05302 0.89659 1.02372 1.70275 1.13869 1.29270 1.11995 1.25406 1.03509 0.85829 0.95576 0.91723 0.90313 0.90350 0.85293 0.87786 0.75044 0.95176 0.91542 0.92642 0.89753 0.87938 0.88942 0.90199 0.79052 0.80106 0.75687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.99 71.98 0.65 -2.18 16 2 C 0.15 3.04 2.70 44.99 0.12 3.16 16 3 H 0.10 2.20 7.81 -2.39 -0.02 2.18 16 4 C -0.14 -2.94 5.18 29.85 0.15 -2.79 16 5 C 0.51 15.10 7.44 87.66 0.65 15.76 16 6 O -0.58 -20.42 14.19 -3.06 -0.04 -20.46 16 7 N -0.70 -22.83 5.48 -463.06 -2.54 -25.37 16 8 C 0.16 6.01 5.08 86.38 0.44 6.45 16 9 C -0.04 -1.65 0.85 -52.93 -0.04 -1.70 16 10 C -0.48 -23.95 9.19 25.60 0.24 -23.72 16 11 H 0.05 2.54 8.06 -2.91 -0.02 2.52 16 12 C 0.04 1.91 5.46 84.65 0.46 2.38 16 13 N -0.94 -55.08 13.96 21.44 0.30 -54.78 16 14 Si 0.92 42.76 24.69 68.60 1.69 44.46 16 15 H -0.29 -13.63 6.96 99.48 0.69 -12.94 16 16 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 17 H -0.23 -9.65 6.12 99.48 0.61 -9.04 16 18 C -0.15 -5.04 9.96 30.62 0.30 -4.73 16 19 C -0.19 -6.71 8.70 30.62 0.27 -6.45 16 20 N -0.45 -9.02 2.62 -506.54 -1.33 -10.34 16 21 C -0.06 -1.17 11.54 83.09 0.96 -0.21 16 22 C -0.05 -1.19 11.87 83.52 0.99 -0.19 16 23 N -0.54 -13.82 11.25 -200.32 -2.25 -16.07 16 24 C 0.18 3.71 11.65 180.26 2.10 5.81 16 25 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.08 1.75 6.17 -2.39 -0.01 1.73 16 27 H 0.08 1.12 7.95 -2.39 -0.02 1.10 16 28 H 0.13 1.92 8.08 -2.39 -0.02 1.90 16 29 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.41 12.65 8.34 -92.71 -0.77 11.88 16 31 H 0.03 1.31 4.25 -2.39 -0.01 1.30 16 32 H 0.07 2.33 8.06 -2.39 -0.02 2.31 16 33 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.19 2.86 8.06 -2.91 -0.02 2.83 16 39 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.23 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -66.74 331.00 3.27 -63.46 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.15 Total: 27.52 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 7.29 Total: -8.42 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -5.82 Total: -106.56 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.04 Total: -20.46 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.69 Total: 44.46 kcal Total: -66.74 3.27 -63.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569814959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.702 kcal (2) G-P(sol) polarization free energy of solvation -66.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds