Wall clock time and date at job start Mon Mar 30 2020 01:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47166 * 2 1 4 4 O 1.42900 * 109.47320 * 239.99907 * 2 1 3 5 5 C 1.35678 * 117.00171 * 270.00313 * 4 2 1 6 6 C 1.38945 * 120.01874 * 179.72301 * 5 4 2 7 7 N 1.32093 * 120.09837 * 179.73416 * 6 5 4 8 8 C 1.32033 * 120.15448 * 0.56386 * 7 6 5 9 9 C 1.39164 * 120.03045 * 359.69026 * 8 7 6 10 10 N 1.38998 * 120.04243 * 180.02562 * 9 8 7 11 11 C 1.46496 * 120.00660 * 354.90439 * 10 9 8 12 12 C 1.52995 * 109.47137 * 185.08984 * 11 10 9 13 13 C 1.50699 * 115.55460 * 39.79131 * 12 11 10 14 14 H 1.07993 * 119.99879 * 264.77509 * 13 12 11 15 15 C 1.37882 * 119.99818 * 84.76924 * 13 12 11 16 16 N 1.31519 * 119.99714 * 184.87073 * 15 13 12 17 17 Si 1.86793 * 120.00096 * 4.86770 * 15 13 12 18 18 H 1.48499 * 109.47139 * 94.80029 * 17 15 13 19 19 H 1.48509 * 109.47063 * 214.79565 * 17 15 13 20 20 H 1.48491 * 109.47315 * 334.79517 * 17 15 13 21 21 C 1.53002 * 117.50077 * 254.07819 * 12 11 10 22 22 C 1.52992 * 60.00120 * 252.51457 * 21 12 11 23 23 N 1.32589 * 120.01615 * 359.97438 * 5 4 2 24 24 H 1.09000 * 109.47078 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46928 * 300.00020 * 1 2 3 26 26 H 1.08996 * 109.46877 * 59.99939 * 1 2 3 27 27 H 1.09006 * 109.46886 * 120.00064 * 2 1 3 28 28 H 1.08995 * 109.46917 * 60.00157 * 3 2 1 29 29 H 1.08995 * 109.46790 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47272 * 299.99819 * 3 2 1 31 31 H 1.07996 * 119.95325 * 0.02562 * 6 5 4 32 32 H 1.07991 * 119.98371 * 179.71719 * 8 7 6 33 33 H 0.97006 * 119.99132 * 174.91135 * 10 9 8 34 34 H 1.09009 * 109.47054 * 305.08673 * 11 10 9 35 35 H 1.08996 * 109.46937 * 65.08380 * 11 10 9 36 36 H 0.96996 * 119.99667 * 179.97438 * 16 15 13 37 37 H 1.09005 * 117.49235 * 0.02562 * 21 12 11 38 38 H 1.08997 * 117.49832 * 145.01904 * 21 12 11 39 39 H 1.09010 * 117.49969 * 252.50528 * 22 21 12 40 40 H 1.09001 * 117.52121 * 107.48437 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2117 -2.0110 -1.0653 6 6 2.6687 -2.7294 -2.1632 7 7 2.8742 -4.0305 -2.0647 8 6 2.6355 -4.6553 -0.9263 9 6 2.1726 -3.9425 0.1756 10 7 1.9218 -4.5999 1.3744 11 6 2.0371 -6.0584 1.4481 12 6 1.5892 -6.5361 2.8308 13 6 0.3877 -5.8305 3.4047 14 1 0.5216 -4.9974 4.0787 15 6 -0.8827 -6.2485 3.0692 16 7 -1.9299 -5.5747 3.4925 17 14 -1.1164 -7.7716 2.0134 18 1 -1.3381 -8.9510 2.8881 19 1 -2.2935 -7.5841 1.1276 20 1 0.0964 -7.9906 1.1851 21 6 2.6758 -6.9900 3.8077 22 6 1.7561 -8.0225 3.1530 23 7 1.9715 -2.6338 0.0803 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9564 -0.8900 31 1 2.8609 -2.2224 -3.0973 32 1 2.8001 -5.7199 -0.8501 33 1 1.6703 -4.0927 2.1622 34 1 1.4049 -6.5119 0.6846 35 1 3.0740 -6.3498 1.2812 36 1 -2.8235 -5.8686 3.2561 37 1 3.7098 -6.9477 3.4653 38 1 2.5218 -6.7779 4.8657 39 1 0.9970 -8.4899 3.7803 40 1 2.1846 -8.6601 2.3797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571947651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:56 Heat of formation + Delta-G solvation = 16.176328 kcal Electronic energy + Delta-G solvation = -21576.516849 eV Core-core repulsion = 18391.892716 eV Total energy + Delta-G solvation = -3184.624132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.16040 -39.90144 -39.04174 -36.39958 -34.72000 -34.25848 -33.78552 -30.47432 -28.21195 -28.10797 -27.14890 -25.63307 -23.85440 -23.24858 -22.39080 -21.00408 -19.41463 -19.03297 -18.14780 -17.60651 -17.07094 -16.88968 -16.80485 -16.04297 -15.65693 -15.47957 -14.98324 -14.89776 -14.70327 -14.30478 -13.99650 -13.70957 -13.39576 -13.21137 -13.06262 -12.99909 -12.81352 -12.59133 -12.37984 -12.14901 -12.00781 -11.94448 -11.71058 -11.47744 -11.05274 -10.63525 -10.43663 -10.21897 -10.13959 -8.64767 -8.30987 -6.38347 0.13327 0.33130 1.34453 1.39176 1.48543 1.84551 2.14801 2.35945 2.84314 3.05174 3.21999 3.44367 3.62725 3.67420 3.90074 3.99692 4.02844 4.24843 4.28133 4.34282 4.42371 4.49055 4.58417 4.66190 4.76393 4.79148 4.81205 4.87240 4.91054 5.09461 5.14559 5.19720 5.24413 5.31293 5.51615 5.66961 5.86760 6.06937 6.26564 6.54976 6.62423 6.71785 7.01985 7.32745 8.83559 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.005193 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.924950 B = 5390.787303 C = 5954.449232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 C -0.140 4.140 4 O -0.297 6.297 5 C 0.322 3.678 6 C -0.051 4.051 7 N -0.378 5.378 8 C -0.068 4.068 9 C 0.393 3.607 10 N -0.683 5.683 11 C 0.161 3.839 12 C -0.043 4.043 13 C -0.479 4.479 14 H 0.034 0.966 15 C 0.026 3.974 16 N -0.945 5.945 17 Si 0.930 3.070 18 H -0.274 1.274 19 H -0.309 1.309 20 H -0.218 1.218 21 C -0.160 4.160 22 C -0.185 4.185 23 N -0.585 5.585 24 H 0.030 0.970 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.192 0.808 32 H 0.181 0.819 33 H 0.406 0.594 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.262 0.738 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.113 5.885 -8.666 14.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 C -0.197 4.197 4 O -0.203 6.203 5 C 0.138 3.862 6 C -0.214 4.214 7 N -0.091 5.091 8 C -0.235 4.235 9 C 0.151 3.849 10 N -0.311 5.311 11 C 0.038 3.962 12 C -0.044 4.044 13 C -0.517 4.517 14 H 0.053 0.947 15 C -0.172 4.172 16 N -0.585 5.585 17 Si 0.755 3.245 18 H -0.200 1.200 19 H -0.238 1.238 20 H -0.140 1.140 21 C -0.197 4.197 22 C -0.222 4.222 23 N -0.325 5.325 24 H 0.049 0.951 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.209 0.791 32 H 0.198 0.802 33 H 0.243 0.757 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.993 5.869 -8.854 14.584 hybrid contribution -1.293 -0.331 0.742 1.527 sum 8.699 5.538 -8.111 13.120 Atomic orbital electron populations 1.22176 0.94739 1.01456 1.03762 1.22555 0.94648 0.94163 0.86924 1.21880 1.01999 0.91562 1.04278 1.86303 1.79668 1.14952 1.39347 1.20847 0.89912 0.85587 0.89894 1.22699 1.09460 0.89909 0.99363 1.68185 1.08699 1.08474 1.23756 1.23057 1.09462 1.02192 0.88830 1.19334 0.89328 0.87576 0.88638 1.44814 1.70453 1.07336 1.08487 1.21222 1.00104 0.77838 0.97086 1.19465 0.96901 0.94787 0.93293 1.20261 0.89036 1.15347 1.27014 0.94741 1.25779 0.95546 0.99458 0.96451 1.70054 0.98985 1.41426 1.48009 0.86043 0.78723 0.80048 0.79673 1.19954 1.23758 1.13981 1.22958 0.95259 1.03350 0.98151 1.23027 1.03035 0.92196 1.03969 1.67386 1.27543 1.10324 1.27227 0.95085 0.89682 0.90740 0.91153 0.88813 0.91599 0.90599 0.79090 0.80201 0.75746 0.92525 0.89786 0.92890 0.87326 0.90612 0.90799 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 9.53 71.98 0.69 -3.54 16 2 C 0.07 1.90 3.12 30.60 0.10 1.99 16 3 C -0.14 -2.50 9.56 71.98 0.69 -1.82 16 4 O -0.30 -8.56 9.77 -89.95 -0.88 -9.44 16 5 C 0.32 10.44 7.46 84.75 0.63 11.07 16 6 C -0.05 -1.51 11.16 84.82 0.95 -0.57 16 7 N -0.38 -11.94 10.48 -194.24 -2.04 -13.98 16 8 C -0.07 -2.18 10.47 84.89 0.89 -1.30 16 9 C 0.39 14.16 7.66 132.97 1.02 15.18 16 10 N -0.68 -25.65 5.46 -344.80 -1.88 -27.54 16 11 C 0.16 5.56 4.81 86.38 0.42 5.98 16 12 C -0.04 -1.71 1.13 -52.93 -0.06 -1.77 16 13 C -0.48 -24.68 8.09 25.60 0.21 -24.48 16 14 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 15 C 0.03 1.41 5.47 84.66 0.46 1.88 16 16 N -0.95 -57.26 13.96 21.45 0.30 -56.96 16 17 Si 0.93 41.96 25.19 68.60 1.73 43.69 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 20 H -0.22 -8.43 5.23 99.48 0.52 -7.91 16 21 C -0.16 -5.35 9.88 30.59 0.30 -5.05 16 22 C -0.18 -6.39 7.33 30.59 0.22 -6.16 16 23 N -0.58 -21.33 8.85 -305.56 -2.70 -24.04 16 24 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.07 2.11 7.00 -2.38 -0.02 2.09 16 28 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.19 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.18 4.97 6.74 -2.92 -0.02 4.95 16 33 H 0.41 17.03 7.68 -92.70 -0.71 16.32 16 34 H 0.06 1.99 6.40 -2.38 -0.02 1.98 16 35 H 0.08 2.32 7.79 -2.39 -0.02 2.30 16 36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.11 2.92 8.08 -2.38 -0.02 2.91 16 38 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.07 2.80 7.13 -2.38 -0.02 2.79 16 40 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -63.27 329.21 1.18 -62.09 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: 0.14 Total: 34.75 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 6.51 Total: -8.58 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -6.32 Total: -122.51 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.88 Total: -9.44 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.73 Total: 43.69 kcal Total: -63.27 1.18 -62.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571947651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.268 kcal (2) G-P(sol) polarization free energy of solvation -63.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds