Wall clock time and date at job start Mon Mar 30 2020 02:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50703 * 120.00055 * 2 1 4 4 N 1.46497 * 109.47172 * 125.95976 * 3 2 1 5 5 C 1.46496 * 120.00048 * 265.34702 * 4 3 2 6 6 C 1.50708 * 109.47379 * 274.40759 * 5 4 3 7 7 H 1.08001 * 119.99777 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99936 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00397 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99859 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46870 * 60.00305 * 10 8 6 12 12 H 1.48503 * 109.47032 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47147 * 300.00184 * 10 8 6 14 14 C 1.34782 * 120.00140 * 85.35048 * 4 3 2 15 15 O 1.21286 * 119.99793 * 5.54127 * 14 4 3 16 16 C 1.50700 * 120.00057 * 185.54166 * 14 4 3 17 17 H 1.08991 * 109.47098 * 34.60772 * 16 14 4 18 18 C 1.52999 * 109.46975 * 274.60485 * 16 14 4 19 19 C 1.50701 * 109.46784 * 154.60903 * 16 14 4 20 20 C 1.39864 * 126.04284 * 60.00334 * 19 16 14 21 21 N 1.30838 * 108.20288 * 179.97438 * 20 19 16 22 22 N 1.40083 * 108.20363 * 0.02562 * 21 20 19 23 23 C 1.46504 * 126.03587 * 179.97438 * 22 21 20 24 24 C 1.34943 * 107.92880 * 359.97438 * 22 21 20 25 25 H 1.08003 * 120.00176 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99993 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.00176 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46781 * 5.95719 * 3 2 1 29 29 H 1.09002 * 109.46843 * 245.96222 * 3 2 1 30 30 H 1.09000 * 109.47463 * 34.40803 * 5 4 3 31 31 H 1.09001 * 109.47230 * 154.40662 * 5 4 3 32 32 H 0.97003 * 120.00286 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.46808 * 64.49876 * 18 16 14 34 34 H 1.08997 * 109.47244 * 184.49053 * 18 16 14 35 35 H 1.08999 * 109.47619 * 304.49785 * 18 16 14 36 36 H 1.08002 * 125.89590 * 359.97438 * 20 19 16 37 37 H 1.08996 * 109.47217 * 90.01794 * 23 22 21 38 38 H 1.08998 * 109.47248 * 210.01772 * 23 22 21 39 39 H 1.09000 * 109.47137 * 330.02294 * 23 22 21 40 40 H 1.07997 * 126.12885 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0100 1.3225 1.1180 5 6 2.6280 1.9371 2.3917 6 6 2.9058 3.4173 2.3387 7 1 3.3255 3.8563 1.4456 8 6 2.6253 4.2109 3.4307 9 7 2.1148 3.6763 4.5184 10 14 2.9705 6.0457 3.3652 11 1 2.1836 6.6583 2.2648 12 1 2.5830 6.6686 4.6564 13 1 4.4183 6.2686 3.1221 14 6 4.2324 0.7731 0.9746 15 8 4.5861 0.3547 -0.1074 16 6 5.1597 0.6788 2.1588 17 1 4.5776 0.4991 3.0626 18 6 5.9361 1.9890 2.3042 19 6 6.1269 -0.4578 1.9500 20 6 7.0391 -0.5792 0.8967 21 7 7.7028 -1.6952 1.0574 22 7 7.2328 -2.3205 2.2194 23 6 7.7066 -3.5954 2.7640 24 6 6.2665 -1.5413 2.7486 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3599 2.1308 0.1067 29 1 2.6076 1.4104 -0.9386 30 1 1.5652 1.7731 2.5700 31 1 3.2054 1.4877 3.1996 32 1 1.9177 4.2346 5.2868 33 1 5.2432 2.7983 2.5345 34 1 6.6633 1.8930 3.1105 35 1 6.4550 2.2094 1.3713 36 1 7.1726 0.1266 0.0901 37 1 8.5303 -3.4121 3.4538 38 1 6.8921 -4.0893 3.2938 39 1 8.0499 -4.2332 1.9495 40 1 5.7053 -1.7456 3.6484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573469773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:09 Heat of formation + Delta-G solvation = 62.482213 kcal Electronic energy + Delta-G solvation = -21834.745636 eV Core-core repulsion = 18652.129477 eV Total energy + Delta-G solvation = -3182.616158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98726 -39.04054 -35.44205 -34.13027 -33.28371 -32.32323 -31.86540 -29.11396 -27.46363 -26.26743 -25.83345 -23.32061 -22.73413 -20.80675 -20.39053 -19.47870 -18.08806 -16.65163 -16.28963 -16.15633 -15.51367 -15.21914 -14.61736 -14.46785 -14.11670 -13.85824 -13.50581 -13.05793 -12.71611 -12.64729 -12.47395 -12.36717 -12.28887 -11.60270 -11.44485 -11.35950 -11.07183 -10.97741 -10.87233 -10.85488 -10.68704 -10.19754 -10.04509 -9.72419 -9.19249 -9.08043 -8.79550 -8.51796 -8.03127 -7.66900 -6.17867 -4.24135 2.14337 2.59754 2.74915 3.15578 3.24789 3.30029 3.32437 3.53854 4.14893 4.35353 4.66484 5.06228 5.10924 5.14617 5.31621 5.33542 5.37802 5.46725 5.60111 5.73785 5.77514 5.96953 6.08326 6.10584 6.23427 6.28919 6.40258 6.54221 6.65775 6.81641 6.95769 6.96032 7.05088 7.11338 7.22905 7.26943 7.60373 7.77369 7.99625 8.07064 8.41519 8.81199 9.10881 9.42783 10.88550 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.005748 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.123243 B = 4870.290328 C = 5971.701508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C 0.145 3.855 4 N -0.593 5.593 5 C 0.236 3.764 6 C -0.534 4.534 7 H 0.062 0.938 8 C 0.067 3.933 9 N -0.891 5.891 10 Si 0.893 3.107 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.524 3.476 15 O -0.568 6.568 16 C -0.026 4.026 17 H 0.097 0.903 18 C -0.141 4.141 19 C -0.207 4.207 20 C 0.087 3.913 21 N -0.313 5.313 22 N -0.387 5.387 23 C 0.107 3.893 24 C 0.050 3.950 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.265 0.735 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.181 0.819 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.498 -9.493 -1.022 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.171 4.171 3 C 0.021 3.979 4 N -0.323 5.323 5 C 0.116 3.884 6 C -0.572 4.572 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.312 3.688 15 O -0.449 6.449 16 C -0.048 4.048 17 H 0.115 0.885 18 C -0.199 4.199 19 C -0.219 4.219 20 C -0.099 4.099 21 N -0.134 5.134 22 N -0.169 5.169 23 C -0.035 4.035 24 C -0.096 4.096 25 H 0.115 0.885 26 H 0.109 0.891 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.198 0.802 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.567 -10.565 -1.774 12.073 hybrid contribution -0.676 1.486 0.590 1.735 sum 4.892 -9.079 -1.184 10.381 Atomic orbital electron populations 1.23744 0.95782 1.01451 1.02401 1.23410 0.96033 0.99438 0.98265 1.20367 0.91943 0.94524 0.91027 1.48193 1.12783 1.56102 1.15235 1.19487 0.96848 0.92750 0.79289 1.21432 1.42983 0.92563 1.00257 0.92011 1.24916 0.94778 0.98765 0.95195 1.69910 1.42891 1.36126 1.03943 0.86624 0.79014 0.84961 0.77308 1.20183 1.21221 1.19968 1.20428 0.81961 0.76731 0.89663 1.90568 1.75703 1.50493 1.28091 1.19469 0.93729 0.93900 0.97707 0.88480 1.21811 1.00492 0.96475 1.01074 1.19785 1.04388 0.98906 0.98825 1.23698 0.93286 0.94700 0.98209 1.77302 1.23936 1.10181 1.01979 1.48316 1.29994 1.18455 1.20180 1.21727 1.00464 0.81943 0.99336 1.22251 0.94424 0.92536 1.00343 0.88459 0.89052 0.88010 0.89826 0.90395 0.94932 0.93954 0.92497 0.88556 0.92775 0.93241 0.80228 0.91232 0.89873 0.89726 0.81188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.88 14.32 29.02 0.42 -2.47 16 2 C -0.15 -2.57 9.81 -36.02 -0.35 -2.92 16 3 C 0.14 2.72 5.87 -5.19 -0.03 2.69 16 4 N -0.59 -12.32 2.45 -176.43 -0.43 -12.76 16 5 C 0.24 5.40 4.86 -5.19 -0.03 5.38 16 6 C -0.53 -13.23 7.47 -34.44 -0.26 -13.49 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -23.70 13.29 55.43 0.74 -22.96 16 10 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 12 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 14 C 0.52 10.81 6.73 -10.98 -0.07 10.74 16 15 O -0.57 -12.69 14.82 5.55 0.08 -12.61 16 16 C -0.03 -0.47 2.31 -92.92 -0.21 -0.69 16 17 H 0.10 1.77 6.17 -51.93 -0.32 1.45 16 18 C -0.14 -2.55 8.98 37.16 0.33 -2.21 16 19 C -0.21 -3.56 4.63 -105.05 -0.49 -4.05 16 20 C 0.09 1.54 10.55 -17.37 -0.18 1.36 16 21 N -0.31 -5.38 12.58 30.62 0.39 -4.99 16 22 N -0.39 -5.56 4.01 -68.16 -0.27 -5.83 16 23 C 0.11 0.97 11.47 59.85 0.69 1.65 16 24 C 0.05 0.73 11.38 -17.22 -0.20 0.53 16 25 H 0.10 1.38 7.84 -52.48 -0.41 0.96 16 26 H 0.09 1.17 8.06 -52.48 -0.42 0.75 16 27 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 28 H 0.08 1.55 7.69 -51.93 -0.40 1.15 16 29 H 0.08 1.48 7.49 -51.93 -0.39 1.09 16 30 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 31 H 0.04 0.99 5.66 -51.93 -0.29 0.69 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.10 1.98 5.83 -51.93 -0.30 1.67 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 36 H 0.18 3.10 7.92 -52.49 -0.42 2.69 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -29.94 339.55 -5.77 -35.71 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.88 Total: 5.25 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.48 Total: -1.88 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.42 Total: -46.54 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.08 Total: -12.61 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.94 -5.77 -35.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573469773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.190 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds