Wall clock time and date at job start Mon Mar 30 2020 02:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50703 * 120.00055 * 2 1 4 4 N 1.46497 * 109.47172 * 125.95976 * 3 2 1 5 5 C 1.46496 * 120.00048 * 265.34702 * 4 3 2 6 6 C 1.50708 * 109.47379 * 274.40759 * 5 4 3 7 7 H 1.08001 * 119.99777 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99936 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00397 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99859 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46870 * 60.00305 * 10 8 6 12 12 H 1.48503 * 109.47032 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47147 * 300.00184 * 10 8 6 14 14 C 1.34782 * 120.00140 * 85.35048 * 4 3 2 15 15 O 1.21286 * 119.99793 * 5.54127 * 14 4 3 16 16 C 1.50700 * 120.00057 * 185.54166 * 14 4 3 17 17 H 1.08991 * 109.47098 * 34.60772 * 16 14 4 18 18 C 1.52999 * 109.46975 * 274.60485 * 16 14 4 19 19 C 1.50701 * 109.46784 * 154.60903 * 16 14 4 20 20 C 1.39864 * 126.04284 * 60.00334 * 19 16 14 21 21 N 1.30838 * 108.20288 * 179.97438 * 20 19 16 22 22 N 1.40083 * 108.20363 * 0.02562 * 21 20 19 23 23 C 1.46504 * 126.03587 * 179.97438 * 22 21 20 24 24 C 1.34943 * 107.92880 * 359.97438 * 22 21 20 25 25 H 1.08003 * 120.00176 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99993 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.00176 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46781 * 5.95719 * 3 2 1 29 29 H 1.09002 * 109.46843 * 245.96222 * 3 2 1 30 30 H 1.09000 * 109.47463 * 34.40803 * 5 4 3 31 31 H 1.09001 * 109.47230 * 154.40662 * 5 4 3 32 32 H 0.97003 * 120.00286 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.46808 * 64.49876 * 18 16 14 34 34 H 1.08997 * 109.47244 * 184.49053 * 18 16 14 35 35 H 1.08999 * 109.47619 * 304.49785 * 18 16 14 36 36 H 1.08002 * 125.89590 * 359.97438 * 20 19 16 37 37 H 1.08996 * 109.47217 * 90.01794 * 23 22 21 38 38 H 1.08998 * 109.47248 * 210.01772 * 23 22 21 39 39 H 1.09000 * 109.47137 * 330.02294 * 23 22 21 40 40 H 1.07997 * 126.12885 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0100 1.3225 1.1180 5 6 2.6280 1.9371 2.3917 6 6 2.9058 3.4173 2.3387 7 1 3.3255 3.8563 1.4456 8 6 2.6253 4.2109 3.4307 9 7 2.1148 3.6763 4.5184 10 14 2.9705 6.0457 3.3652 11 1 2.1836 6.6583 2.2648 12 1 2.5830 6.6686 4.6564 13 1 4.4183 6.2686 3.1221 14 6 4.2324 0.7731 0.9746 15 8 4.5861 0.3547 -0.1074 16 6 5.1597 0.6788 2.1588 17 1 4.5776 0.4991 3.0626 18 6 5.9361 1.9890 2.3042 19 6 6.1269 -0.4578 1.9500 20 6 7.0391 -0.5792 0.8967 21 7 7.7028 -1.6952 1.0574 22 7 7.2328 -2.3205 2.2194 23 6 7.7066 -3.5954 2.7640 24 6 6.2665 -1.5413 2.7486 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3599 2.1308 0.1067 29 1 2.6076 1.4104 -0.9386 30 1 1.5652 1.7731 2.5700 31 1 3.2054 1.4877 3.1996 32 1 1.9177 4.2346 5.2868 33 1 5.2432 2.7983 2.5345 34 1 6.6633 1.8930 3.1105 35 1 6.4550 2.2094 1.3713 36 1 7.1726 0.1266 0.0901 37 1 8.5303 -3.4121 3.4538 38 1 6.8921 -4.0893 3.2938 39 1 8.0499 -4.2332 1.9495 40 1 5.7053 -1.7456 3.6484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573469773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:09 Heat of formation + Delta-G solvation = 45.591867 kcal Electronic energy + Delta-G solvation = -21835.478056 eV Core-core repulsion = 18652.129477 eV Total energy + Delta-G solvation = -3183.348579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.22026 -40.62982 -37.04026 -35.61793 -34.77887 -33.88152 -33.20214 -30.32514 -29.27654 -27.39818 -27.27471 -24.99882 -24.35019 -21.99350 -21.68823 -20.79242 -19.62649 -18.43241 -17.80060 -17.68697 -16.95807 -16.30741 -16.26106 -16.08305 -15.43616 -15.13878 -14.84803 -14.50843 -14.30768 -13.96876 -13.76975 -13.60770 -13.37637 -13.20163 -13.07344 -12.90585 -12.69341 -12.58048 -12.42234 -12.31091 -12.20043 -11.99105 -11.62904 -11.36210 -10.69016 -10.49760 -10.29777 -10.16413 -9.41071 -9.24704 -8.13031 -6.24760 0.97234 1.30696 1.47024 1.48675 1.55106 1.73706 1.81985 1.93558 2.44181 2.64680 3.17448 3.65532 3.85973 4.03053 4.10813 4.23780 4.30226 4.37618 4.42056 4.48501 4.54461 4.67625 4.71443 4.84098 4.89705 4.91129 5.01100 5.04766 5.12670 5.25544 5.33483 5.53020 5.67326 5.68847 5.73812 5.80431 5.99630 6.14292 6.20038 6.66982 6.76930 6.90332 7.39819 7.51506 8.92222 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.005748 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.123243 B = 4870.290328 C = 5971.701508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.177 4.177 3 C 0.143 3.857 4 N -0.597 5.597 5 C 0.252 3.748 6 C -0.536 4.536 7 H 0.052 0.948 8 C 0.028 3.972 9 N -0.917 5.917 10 Si 0.947 3.053 11 H -0.276 1.276 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.519 3.481 15 O -0.588 6.588 16 C -0.017 4.017 17 H 0.098 0.902 18 C -0.132 4.132 19 C -0.236 4.236 20 C 0.071 3.929 21 N -0.337 5.337 22 N -0.380 5.380 23 C 0.095 3.905 24 C 0.065 3.935 25 H 0.104 0.896 26 H 0.117 0.883 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.016 0.984 31 H 0.039 0.961 32 H 0.267 0.733 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.171 0.829 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.382 -10.478 -0.085 11.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.020 3.980 4 N -0.326 5.326 5 C 0.132 3.868 6 C -0.574 4.574 7 H 0.070 0.930 8 C -0.172 4.172 9 N -0.556 5.556 10 Si 0.773 3.227 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.196 1.196 14 C 0.309 3.691 15 O -0.470 6.470 16 C -0.039 4.039 17 H 0.116 0.884 18 C -0.190 4.190 19 C -0.248 4.248 20 C -0.114 4.114 21 N -0.159 5.159 22 N -0.162 5.162 23 C -0.045 4.045 24 C -0.082 4.082 25 H 0.122 0.878 26 H 0.135 0.865 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.188 0.812 37 H 0.107 0.893 38 H 0.132 0.868 39 H 0.107 0.893 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.463 -11.566 -0.855 12.820 hybrid contribution -0.664 1.691 0.291 1.840 sum 4.800 -9.874 -0.564 10.994 Atomic orbital electron populations 1.24001 0.94925 1.03013 0.98594 1.23175 0.96733 0.97964 1.01754 1.20421 0.91703 0.95841 0.89993 1.48220 1.13407 1.55961 1.15027 1.19150 0.95540 0.91977 0.80149 1.21547 1.42481 0.93572 0.99813 0.93016 1.25506 0.94670 1.02146 0.94918 1.69989 1.43855 1.37343 1.04439 0.85778 0.78878 0.80837 0.77222 1.20102 1.20888 1.19614 1.20888 0.81992 0.76086 0.90170 1.90549 1.75996 1.51348 1.29110 1.19350 0.93503 0.94596 0.96432 0.88392 1.21699 1.00133 0.95581 1.01583 1.19745 1.05070 0.99924 1.00069 1.23631 0.94082 0.95131 0.98543 1.77228 1.24661 1.10306 1.03712 1.48750 1.29139 1.19364 1.18987 1.22192 1.02372 0.79911 0.99999 1.22739 0.93715 0.91277 1.00504 0.87769 0.86454 0.88720 0.90023 0.91295 0.96629 0.94275 0.92420 0.91114 0.90975 0.93473 0.81234 0.89300 0.86795 0.89256 0.77646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 14.32 67.79 0.97 -3.64 16 2 C -0.18 -5.90 9.81 25.66 0.25 -5.65 16 3 C 0.14 5.46 5.87 85.63 0.50 5.97 16 4 N -0.60 -25.19 2.45 -830.49 -2.04 -27.23 16 5 C 0.25 11.69 4.86 85.64 0.42 12.10 16 6 C -0.54 -26.76 7.47 25.60 0.19 -26.57 16 7 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 8 C 0.03 1.43 5.46 84.65 0.46 1.89 16 9 N -0.92 -48.65 13.29 21.45 0.28 -48.37 16 10 Si 0.95 40.72 29.54 68.60 2.03 42.75 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 12 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 14 C 0.52 21.79 6.73 87.66 0.59 22.38 16 15 O -0.59 -26.91 14.82 -3.05 -0.05 -26.95 16 16 C -0.02 -0.61 2.31 -12.29 -0.03 -0.64 16 17 H 0.10 3.53 6.17 -2.39 -0.01 3.51 16 18 C -0.13 -4.81 8.98 71.98 0.65 -4.16 16 19 C -0.24 -7.97 4.63 -20.14 -0.09 -8.07 16 20 C 0.07 2.54 10.55 85.23 0.90 3.44 16 21 N -0.34 -11.37 12.58 -57.03 -0.72 -12.09 16 22 N -0.38 -10.08 4.01 -369.57 -1.48 -11.56 16 23 C 0.09 1.40 11.47 127.77 1.47 2.87 16 24 C 0.06 1.76 11.38 83.54 0.95 2.71 16 25 H 0.10 2.74 7.84 -2.91 -0.02 2.71 16 26 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 27 H 0.09 3.29 8.06 -2.91 -0.02 3.26 16 28 H 0.08 3.07 7.69 -2.39 -0.02 3.06 16 29 H 0.07 2.71 7.49 -2.39 -0.02 2.69 16 30 H 0.02 0.77 8.11 -2.39 -0.02 0.75 16 31 H 0.04 1.84 5.66 -2.39 -0.01 1.83 16 32 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 33 H 0.07 2.93 5.83 -2.39 -0.01 2.92 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 36 H 0.17 6.14 7.92 -2.91 -0.02 6.11 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.21 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -64.18 339.55 6.27 -57.91 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 1.02 Total: 22.91 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 7.22 Total: 2.62 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -3.95 Total: -99.24 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.05 Total: -26.95 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -64.18 6.27 -57.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573469773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.500 kcal (2) G-P(sol) polarization free energy of solvation -64.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds