Wall clock time and date at job start Mon Mar 30 2020 01:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.29857 * 2 1 4 4 C 1.50619 * 109.30077 * 240.41378 * 2 1 3 5 5 C 1.38959 * 118.42135 * 42.49008 * 4 2 1 6 6 F 1.35102 * 119.83993 * 359.59820 * 5 4 2 7 7 C 1.38238 * 120.31780 * 179.57878 * 5 4 2 8 8 C 1.38222 * 119.83991 * 0.02562 * 7 5 4 9 9 C 1.38040 * 119.86200 * 0.09539 * 8 7 5 10 10 C 1.37793 * 121.86194 * 222.24954 * 4 2 1 11 11 C 1.50717 * 121.65314 * 0.53030 * 10 4 2 12 12 C 1.52884 * 109.97526 * 343.09727 * 11 10 4 13 13 N 1.46629 * 109.13389 * 119.48443 * 2 1 3 14 14 C 1.46898 * 111.00119 * 49.37381 * 13 2 1 15 15 C 1.52997 * 109.47515 * 185.71543 * 14 13 2 16 16 C 1.52998 * 109.47396 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46952 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00287 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00090 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99762 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00501 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46813 * 60.00181 * 21 19 17 23 23 H 1.48496 * 109.47714 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47195 * 300.00424 * 21 19 17 25 25 H 1.08997 * 109.46926 * 168.87131 * 1 2 3 26 26 H 1.08999 * 109.47371 * 288.87691 * 1 2 3 27 27 H 1.09005 * 109.47335 * 48.87718 * 1 2 3 28 28 H 1.08006 * 120.07768 * 180.02562 * 7 5 4 29 29 H 1.08008 * 120.06649 * 180.09296 * 8 7 5 30 30 H 1.07996 * 119.80077 * 179.97438 * 9 8 7 31 31 H 1.09001 * 109.39155 * 103.25388 * 11 10 4 32 32 H 1.09008 * 109.38308 * 222.94234 * 11 10 4 33 33 H 1.09001 * 109.63466 * 170.05693 * 12 11 10 34 34 H 1.09003 * 109.62730 * 290.64331 * 12 11 10 35 35 H 1.09002 * 109.47295 * 305.71497 * 14 13 2 36 36 H 1.09007 * 109.47376 * 65.71307 * 14 13 2 37 37 H 1.09008 * 109.47216 * 300.00267 * 15 14 13 38 38 H 1.09007 * 109.46991 * 59.99529 * 15 14 13 39 39 H 1.08995 * 109.47198 * 300.00169 * 16 15 14 40 40 H 1.08996 * 109.46774 * 60.00509 * 16 15 14 41 41 H 0.97000 * 119.99479 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0288 0.0000 4 6 2.0279 -0.7019 -1.2362 5 6 1.3959 -0.4393 -2.4456 6 9 0.3562 0.4224 -2.4876 7 6 1.8263 -1.0551 -3.6060 8 6 2.8900 -1.9367 -3.5629 9 6 3.5165 -2.1998 -2.3613 10 6 3.0859 -1.5837 -1.1957 11 6 3.7986 -1.9052 0.0928 12 6 3.4717 -0.8486 1.1482 13 7 2.0106 -0.6818 1.2059 14 6 1.3396 -1.9767 1.3813 15 6 1.7592 -2.5917 2.7179 16 6 1.0598 -3.9401 2.9009 17 6 1.4736 -4.5461 4.2172 18 1 2.1659 -4.0217 4.8593 19 6 0.9685 -5.7699 4.6019 20 7 0.1258 -6.4088 3.8198 21 14 1.4808 -6.5208 6.2338 22 1 1.0948 -5.6094 7.3408 23 1 0.8031 -7.8302 6.4108 24 1 2.9524 -6.7200 6.2468 25 1 -0.3633 -1.0083 -0.1984 26 1 -0.3634 0.3325 0.9724 27 1 -0.3634 0.6759 -0.7742 28 1 1.3326 -0.8478 -4.5440 29 1 3.2303 -2.4188 -4.4676 30 1 4.3472 -2.8891 -2.3287 31 1 3.4778 -2.8841 0.4493 32 1 4.8743 -1.9206 -0.0829 33 1 3.8416 -1.1750 2.1202 34 1 3.9378 0.0982 0.8751 35 1 0.2595 -1.8305 1.3719 36 1 1.6227 -2.6458 0.5687 37 1 2.8394 -2.7380 2.7275 38 1 1.4760 -1.9227 3.5306 39 1 -0.0202 -3.7934 2.8916 40 1 1.3426 -4.6093 2.0884 41 1 -0.2293 -7.2700 4.0903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577800423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:22 Heat of formation + Delta-G solvation = -24.586903 kcal Electronic energy + Delta-G solvation = -21901.484078 eV Core-core repulsion = 18695.172358 eV Total energy + Delta-G solvation = -3206.311720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.07273 -40.55967 -37.56884 -33.98506 -33.30904 -32.09881 -30.54974 -29.75786 -27.50866 -26.54265 -24.15061 -23.24177 -22.41146 -21.55478 -20.28483 -18.80966 -17.26374 -16.67928 -16.39945 -16.14574 -15.66246 -15.46494 -14.96434 -14.59797 -14.29078 -14.06419 -13.72162 -13.37631 -13.27581 -12.61123 -12.34974 -12.26827 -12.09531 -11.79805 -11.58559 -11.46339 -11.29454 -11.19466 -10.97924 -10.74991 -10.60459 -10.48278 -10.33506 -9.57527 -9.30983 -9.04404 -8.79830 -8.67635 -8.31704 -8.09063 -5.97095 -3.99233 1.06053 1.09660 3.34952 3.39264 3.41806 3.44541 4.05496 4.19622 4.48514 4.53915 4.60274 4.77016 4.97685 5.08446 5.14931 5.28637 5.32965 5.38561 5.39894 5.52990 5.68234 5.82516 5.84802 5.88061 5.91780 6.02706 6.03096 6.10452 6.18143 6.24164 6.31262 6.40601 6.44213 6.72370 6.81281 6.84243 7.13107 7.33602 7.39885 7.71170 7.86386 8.03457 8.46557 9.07862 9.64617 11.14289 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024931 B = 0.004100 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.828338 B = 6828.090227 C = 7009.444560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 H 0.091 0.909 4 C -0.138 4.138 5 C 0.105 3.895 6 F -0.135 7.135 7 C -0.162 4.162 8 C -0.094 4.094 9 C -0.130 4.130 10 C -0.042 4.042 11 C -0.125 4.125 12 C 0.051 3.949 13 N -0.519 5.519 14 C 0.044 3.956 15 C -0.105 4.105 16 C 0.023 3.977 17 C -0.518 4.518 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.015 0.985 40 H 0.012 0.988 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 12.447 -14.467 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.012 3.988 3 H 0.109 0.891 4 C -0.141 4.141 5 C 0.085 3.915 6 F -0.113 7.113 7 C -0.181 4.181 8 C -0.112 4.112 9 C -0.148 4.148 10 C -0.042 4.042 11 C -0.163 4.163 12 C -0.077 4.077 13 N -0.240 5.240 14 C -0.083 4.083 15 C -0.143 4.143 16 C -0.015 4.015 17 C -0.556 4.556 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.030 0.970 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.756 12.624 -14.033 19.733 hybrid contribution 0.244 -1.022 -0.031 1.051 sum 5.999 11.601 -14.064 19.193 Atomic orbital electron populations 1.22271 0.93303 1.02951 1.03444 1.20591 0.96098 0.97314 0.84777 0.89089 1.20530 0.97449 1.00551 0.95567 1.17592 0.87326 0.92387 0.94200 1.91399 1.55397 1.67649 1.96876 1.21051 0.99714 0.99994 0.97372 1.20907 0.95045 0.97050 0.98195 1.21184 1.01070 1.00557 0.92008 1.19531 0.94255 0.94626 0.95792 1.21222 1.00096 1.02296 0.92661 1.22237 0.88918 0.97685 0.98854 1.62844 1.04522 1.22925 1.33755 1.22483 0.99094 0.87739 0.98965 1.21657 0.99832 0.98736 0.94037 1.19051 0.95641 0.90143 0.96619 1.21210 1.26644 1.03654 1.04132 0.92756 1.25023 0.95156 0.97196 0.97076 1.69964 1.31365 1.15208 1.37069 0.86673 0.78693 0.78383 0.84336 1.20222 1.21338 1.20294 0.92321 0.91120 0.90440 0.85001 0.85185 0.85431 0.88707 0.89997 0.89094 0.91064 0.90702 0.94662 0.93476 0.92630 0.96687 0.96955 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 7.20 37.16 0.27 -1.93 16 2 C 0.12 1.66 2.76 -69.05 -0.19 1.47 16 3 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 4 C -0.14 -1.88 5.00 -104.56 -0.52 -2.40 16 5 C 0.10 1.35 6.95 -39.31 -0.27 1.08 16 6 F -0.13 -1.74 13.82 2.25 0.03 -1.71 16 7 C -0.16 -1.80 10.02 -39.59 -0.40 -2.20 16 8 C -0.09 -0.96 10.05 -39.66 -0.40 -1.36 16 9 C -0.13 -1.47 9.65 -39.49 -0.38 -1.86 16 10 C -0.04 -0.54 5.08 -104.61 -0.53 -1.07 16 11 C -0.12 -1.58 5.15 -27.93 -0.14 -1.73 16 12 C 0.05 0.68 5.50 -3.74 -0.02 0.66 16 13 N -0.52 -7.85 4.91 -228.14 -1.12 -8.97 16 14 C 0.04 0.78 3.78 -3.83 -0.01 0.77 16 15 C -0.10 -2.17 4.94 -26.73 -0.13 -2.30 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 18 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 21 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.06 0.86 6.87 -51.93 -0.36 0.51 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 0.96 5.68 -51.93 -0.29 0.67 16 28 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 29 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.09 1.40 6.64 -51.93 -0.34 1.05 16 32 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.09 1.24 6.79 -51.93 -0.35 0.88 16 34 H 0.07 0.83 8.05 -51.93 -0.42 0.42 16 35 H 0.07 1.37 6.06 -51.93 -0.31 1.06 16 36 H 0.04 0.65 5.45 -51.93 -0.28 0.36 16 37 H 0.05 0.94 6.53 -51.92 -0.34 0.60 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 319.63 15.07 4.82 4.82 Total: -1.00 -30.42 319.63 -9.89 -40.31 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.05 Total: -0.81 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -3.29 Total: -23.95 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.38 Total: -35.42 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.03 Total: -1.71 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.42 -9.89 -40.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577800423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.724 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds