Wall clock time and date at job start Mon Mar 30 2020 01:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.29857 * 2 1 4 4 C 1.50619 * 109.30077 * 240.41378 * 2 1 3 5 5 C 1.38959 * 118.42135 * 42.49008 * 4 2 1 6 6 F 1.35102 * 119.83993 * 359.59820 * 5 4 2 7 7 C 1.38238 * 120.31780 * 179.57878 * 5 4 2 8 8 C 1.38222 * 119.83991 * 0.02562 * 7 5 4 9 9 C 1.38040 * 119.86200 * 0.09539 * 8 7 5 10 10 C 1.37793 * 121.86194 * 222.24954 * 4 2 1 11 11 C 1.50717 * 121.65314 * 0.53030 * 10 4 2 12 12 C 1.52884 * 109.97526 * 343.09727 * 11 10 4 13 13 N 1.46629 * 109.13389 * 119.48443 * 2 1 3 14 14 C 1.46898 * 111.00119 * 49.37381 * 13 2 1 15 15 C 1.52997 * 109.47515 * 185.71543 * 14 13 2 16 16 C 1.52998 * 109.47396 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46952 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00287 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00090 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99762 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00501 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46813 * 60.00181 * 21 19 17 23 23 H 1.48496 * 109.47714 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47195 * 300.00424 * 21 19 17 25 25 H 1.08997 * 109.46926 * 168.87131 * 1 2 3 26 26 H 1.08999 * 109.47371 * 288.87691 * 1 2 3 27 27 H 1.09005 * 109.47335 * 48.87718 * 1 2 3 28 28 H 1.08006 * 120.07768 * 180.02562 * 7 5 4 29 29 H 1.08008 * 120.06649 * 180.09296 * 8 7 5 30 30 H 1.07996 * 119.80077 * 179.97438 * 9 8 7 31 31 H 1.09001 * 109.39155 * 103.25388 * 11 10 4 32 32 H 1.09008 * 109.38308 * 222.94234 * 11 10 4 33 33 H 1.09001 * 109.63466 * 170.05693 * 12 11 10 34 34 H 1.09003 * 109.62730 * 290.64331 * 12 11 10 35 35 H 1.09002 * 109.47295 * 305.71497 * 14 13 2 36 36 H 1.09007 * 109.47376 * 65.71307 * 14 13 2 37 37 H 1.09008 * 109.47216 * 300.00267 * 15 14 13 38 38 H 1.09007 * 109.46991 * 59.99529 * 15 14 13 39 39 H 1.08995 * 109.47198 * 300.00169 * 16 15 14 40 40 H 1.08996 * 109.46774 * 60.00509 * 16 15 14 41 41 H 0.97000 * 119.99479 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0288 0.0000 4 6 2.0279 -0.7019 -1.2362 5 6 1.3959 -0.4393 -2.4456 6 9 0.3562 0.4224 -2.4876 7 6 1.8263 -1.0551 -3.6060 8 6 2.8900 -1.9367 -3.5629 9 6 3.5165 -2.1998 -2.3613 10 6 3.0859 -1.5837 -1.1957 11 6 3.7986 -1.9052 0.0928 12 6 3.4717 -0.8486 1.1482 13 7 2.0106 -0.6818 1.2059 14 6 1.3396 -1.9767 1.3813 15 6 1.7592 -2.5917 2.7179 16 6 1.0598 -3.9401 2.9009 17 6 1.4736 -4.5461 4.2172 18 1 2.1659 -4.0217 4.8593 19 6 0.9685 -5.7699 4.6019 20 7 0.1258 -6.4088 3.8198 21 14 1.4808 -6.5208 6.2338 22 1 1.0948 -5.6094 7.3408 23 1 0.8031 -7.8302 6.4108 24 1 2.9524 -6.7200 6.2468 25 1 -0.3633 -1.0083 -0.1984 26 1 -0.3634 0.3325 0.9724 27 1 -0.3634 0.6759 -0.7742 28 1 1.3326 -0.8478 -4.5440 29 1 3.2303 -2.4188 -4.4676 30 1 4.3472 -2.8891 -2.3287 31 1 3.4778 -2.8841 0.4493 32 1 4.8743 -1.9206 -0.0829 33 1 3.8416 -1.1750 2.1202 34 1 3.9378 0.0982 0.8751 35 1 0.2595 -1.8305 1.3719 36 1 1.6227 -2.6458 0.5687 37 1 2.8394 -2.7380 2.7275 38 1 1.4760 -1.9227 3.5306 39 1 -0.0202 -3.7934 2.8916 40 1 1.3426 -4.6093 2.0884 41 1 -0.2293 -7.2700 4.0903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577800423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:22 Heat of formation + Delta-G solvation = -41.405342 kcal Electronic energy + Delta-G solvation = -21902.213380 eV Core-core repulsion = 18695.172358 eV Total energy + Delta-G solvation = -3207.041022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.03452 -41.60328 -38.62154 -35.88057 -34.39022 -33.78877 -31.92495 -30.69708 -28.93269 -27.98430 -25.69505 -24.33798 -23.71781 -22.53973 -21.99152 -20.03594 -18.40137 -18.20452 -17.68137 -17.34625 -16.69521 -16.61052 -16.50629 -16.03972 -15.60710 -15.17985 -14.84918 -14.62900 -14.44758 -14.20929 -13.71623 -13.54829 -13.29823 -13.11177 -13.03299 -12.74685 -12.63860 -12.52424 -12.39129 -12.23554 -12.10393 -11.96922 -11.69808 -11.36314 -11.27044 -11.07469 -10.53724 -9.73174 -9.59053 -9.30064 -8.18888 -6.30110 0.15299 0.19772 1.40635 1.43911 1.51780 2.41756 2.55222 2.91384 3.14257 3.24541 3.57656 3.65104 3.91538 3.94117 4.13641 4.15167 4.19830 4.33869 4.35697 4.40546 4.47581 4.65783 4.69267 4.72776 4.84372 4.90374 4.94451 5.01014 5.05317 5.09378 5.11105 5.18103 5.25560 5.30485 5.36297 5.51065 5.54157 5.74702 5.86573 5.93075 6.06939 6.12728 6.27921 6.86582 7.39219 8.92961 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024931 B = 0.004100 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.828338 B = 6828.090227 C = 7009.444560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 H 0.103 0.897 4 C -0.156 4.156 5 C 0.086 3.914 6 F -0.139 7.139 7 C -0.162 4.162 8 C -0.089 4.089 9 C -0.134 4.134 10 C -0.060 4.060 11 C -0.119 4.119 12 C 0.049 3.951 13 N -0.524 5.524 14 C 0.062 3.938 15 C -0.087 4.087 16 C 0.028 3.972 17 C -0.541 4.541 18 H 0.061 0.939 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.265 1.265 25 H 0.039 0.961 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.163 0.837 30 H 0.147 0.853 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.056 0.944 38 H 0.051 0.949 39 H -0.014 1.014 40 H -0.012 1.012 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 12.868 -14.981 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 H 0.121 0.879 4 C -0.158 4.158 5 C 0.067 3.933 6 F -0.118 7.118 7 C -0.181 4.181 8 C -0.107 4.107 9 C -0.152 4.152 10 C -0.060 4.060 11 C -0.157 4.157 12 C -0.079 4.079 13 N -0.245 5.245 14 C -0.066 4.066 15 C -0.125 4.125 16 C -0.009 4.009 17 C -0.579 4.579 18 H 0.079 0.921 19 C -0.198 4.198 20 N -0.575 5.575 21 Si 0.789 3.211 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.190 1.190 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.172 0.828 29 H 0.181 0.819 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.005 0.995 40 H 0.006 0.994 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.354 13.066 -14.552 20.894 hybrid contribution -0.256 -1.144 0.045 1.173 sum 7.097 11.923 -14.507 20.075 Atomic orbital electron populations 1.22220 0.93589 1.02028 1.03579 1.20605 0.95903 0.97689 0.84493 0.87909 1.20541 0.98208 1.01467 0.95633 1.17808 0.87630 0.93098 0.94791 1.91376 1.55637 1.67877 1.96907 1.21394 0.99743 0.99357 0.97602 1.21313 0.94108 0.96190 0.99039 1.21491 1.01556 1.00367 0.91828 1.19670 0.94605 0.95268 0.96496 1.21146 1.01578 1.00534 0.92468 1.22325 0.87617 0.99003 0.98952 1.62777 1.05678 1.20990 1.35071 1.22110 0.98612 0.89002 0.96848 1.21387 0.99657 0.95862 0.95628 1.18935 0.94295 0.92478 0.95211 1.21647 1.26890 1.04260 1.05071 0.92116 1.25989 0.94956 0.97708 1.01150 1.70106 1.32509 1.15683 1.39228 0.85505 0.78812 0.77454 0.79314 1.19214 1.20891 1.18985 0.94155 0.91476 0.89304 0.82806 0.81933 0.83560 0.91260 0.87558 0.89599 0.89016 0.91844 0.95504 0.92541 0.93037 0.99529 0.99386 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 7.20 71.98 0.52 -3.78 16 2 C 0.12 3.29 2.76 44.20 0.12 3.41 16 3 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 4 C -0.16 -4.12 5.00 -19.82 -0.10 -4.22 16 5 C 0.09 2.14 6.95 22.44 0.16 2.30 16 6 F -0.14 -3.50 13.82 44.97 0.62 -2.88 16 7 C -0.16 -3.24 10.02 22.27 0.22 -3.02 16 8 C -0.09 -1.57 10.05 22.22 0.22 -1.35 16 9 C -0.13 -2.76 9.65 22.33 0.22 -2.55 16 10 C -0.06 -1.50 5.08 -19.86 -0.10 -1.60 16 11 C -0.12 -2.92 5.15 29.81 0.15 -2.77 16 12 C 0.05 1.24 5.50 86.21 0.47 1.71 16 13 N -0.52 -15.73 4.91 -875.70 -4.30 -20.03 16 14 C 0.06 2.26 3.78 86.30 0.33 2.58 16 15 C -0.09 -3.70 4.94 30.59 0.15 -3.55 16 16 C 0.03 1.54 4.97 29.85 0.15 1.69 16 17 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 19 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 20 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 21 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 25 H 0.04 1.23 6.87 -2.39 -0.02 1.21 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.09 2.19 5.68 -2.38 -0.01 2.18 16 28 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 30 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.07 2.06 6.64 -2.39 -0.02 2.04 16 32 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.09 2.26 6.79 -2.39 -0.02 2.24 16 34 H 0.09 1.97 8.05 -2.39 -0.02 1.95 16 35 H 0.06 2.44 6.06 -2.39 -0.01 2.42 16 36 H 0.03 1.02 5.45 -2.38 -0.01 1.01 16 37 H 0.06 2.27 6.53 -2.38 -0.02 2.25 16 38 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 39 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 40 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 41 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -66.13 319.63 2.85 -63.28 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.02 Total: 12.24 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 3.21 Total: -41.72 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -4.02 Total: -77.56 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.62 Total: -2.88 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -66.13 2.85 -63.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577800423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.872 kcal (2) G-P(sol) polarization free energy of solvation -66.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds