Wall clock time and date at job start Mon Mar 30 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.29394 * 2 1 4 4 C 1.50617 * 109.29941 * 119.38078 * 2 1 3 5 5 C 1.38952 * 118.42039 * 317.74293 * 4 2 1 6 6 F 1.35097 * 119.83950 * 0.17227 * 5 4 2 7 7 C 1.38243 * 120.32055 * 180.14420 * 5 4 2 8 8 C 1.38223 * 119.83890 * 0.03729 * 7 5 4 9 9 C 1.38044 * 119.85905 * 359.91711 * 8 7 5 10 10 C 1.37796 * 121.86294 * 137.77793 * 4 2 1 11 11 C 1.50717 * 121.66233 * 359.70657 * 10 4 2 12 12 C 1.52897 * 109.96567 * 16.76186 * 11 10 4 13 13 N 1.46636 * 109.30223 * 240.41464 * 2 1 3 14 14 C 1.46903 * 110.99802 * 63.74546 * 13 2 1 15 15 C 1.53001 * 109.47150 * 189.99816 * 14 13 2 16 16 C 1.52997 * 109.47233 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47191 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99858 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00254 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00138 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99823 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47468 * 89.99679 * 21 19 17 23 23 H 1.48506 * 109.46921 * 209.99834 * 21 19 17 24 24 H 1.48498 * 109.46893 * 329.99071 * 21 19 17 25 25 H 1.08998 * 109.46929 * 188.80124 * 1 2 3 26 26 H 1.08998 * 109.47355 * 308.80050 * 1 2 3 27 27 H 1.08995 * 109.46762 * 68.80622 * 1 2 3 28 28 H 1.08002 * 120.08046 * 180.02562 * 7 5 4 29 29 H 1.07998 * 120.07080 * 179.97438 * 8 7 5 30 30 H 1.07997 * 119.80086 * 180.02562 * 9 8 7 31 31 H 1.08999 * 109.39418 * 256.61061 * 11 10 4 32 32 H 1.09004 * 109.30922 * 136.85617 * 11 10 4 33 33 H 1.09000 * 109.63519 * 189.95245 * 12 11 10 34 34 H 1.09007 * 109.79335 * 69.45882 * 12 11 10 35 35 H 1.09001 * 109.47228 * 309.99947 * 14 13 2 36 36 H 1.08997 * 109.47319 * 70.00111 * 14 13 2 37 37 H 1.09001 * 109.47162 * 300.00172 * 15 14 13 38 38 H 1.09006 * 109.46972 * 59.99745 * 15 14 13 39 39 H 1.09001 * 109.47193 * 300.00161 * 16 15 14 40 40 H 1.08997 * 109.47271 * 60.00273 * 16 15 14 41 41 H 0.96993 * 120.00084 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0279 -0.6974 1.2387 5 6 1.3928 -0.4342 2.4462 6 9 0.3531 0.4276 2.4851 7 6 1.8193 -1.0504 3.6079 8 6 2.8832 -1.9319 3.5682 9 6 3.5138 -2.1944 2.3686 10 6 3.0862 -1.5790 1.2015 11 6 3.8029 -1.9009 -0.0847 12 6 3.4761 -0.8463 -1.1425 13 7 2.0148 -0.6833 -1.2035 14 6 1.6162 0.0421 -2.4172 15 6 1.9168 -0.8174 -3.6468 16 6 1.5011 -0.0622 -4.9108 17 6 1.7977 -0.9085 -6.1220 18 1 2.2383 -1.8873 -6.0021 19 6 1.5057 -0.4338 -7.3831 20 7 1.7641 -1.1725 -8.4400 21 14 0.7431 1.2588 -7.5904 22 1 1.8189 2.2731 -7.7282 23 1 -0.1087 1.2723 -8.8068 24 1 -0.0875 1.5765 -6.4011 25 1 -0.3633 -1.0156 0.1572 26 1 -0.3634 0.6439 0.8009 27 1 -0.3633 0.3715 -0.9581 28 1 1.3226 -0.8433 4.5443 29 1 3.2198 -2.4150 4.4735 30 1 4.3447 -2.8837 2.3385 31 1 3.4853 -2.8809 -0.4406 32 1 4.8780 -1.9120 0.0948 33 1 3.8489 -1.1734 -2.1132 34 1 3.9395 0.1028 -0.8731 35 1 0.5486 0.2583 -2.3772 36 1 2.1739 0.9763 -2.4818 37 1 2.9844 -1.0336 -3.6868 38 1 1.3590 -1.7517 -3.5822 39 1 0.4334 0.1536 -4.8706 40 1 2.0584 0.8722 -4.9757 41 1 1.5591 -0.8384 -9.3272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577800424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:25 Heat of formation + Delta-G solvation = -22.518368 kcal Electronic energy + Delta-G solvation = -21434.643663 eV Core-core repulsion = 18228.421641 eV Total energy + Delta-G solvation = -3206.222022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.17237 -40.25219 -37.69099 -34.24472 -33.40202 -32.43283 -30.85567 -29.88448 -27.88868 -26.53272 -24.15613 -23.33987 -21.91272 -21.64771 -20.01928 -19.61153 -17.37197 -16.90505 -16.72038 -16.15790 -15.71793 -15.19080 -15.03618 -14.84206 -14.26930 -14.07029 -13.84416 -13.73731 -13.25867 -12.79436 -12.61310 -12.50885 -12.13607 -11.90367 -11.75018 -11.68824 -11.55414 -11.33509 -11.14764 -10.89026 -10.51056 -10.40110 -9.92346 -9.63599 -9.55611 -9.14957 -8.90689 -8.80028 -8.51739 -8.17415 -6.02203 -3.99858 0.96666 1.02562 3.31727 3.36041 3.39268 3.43151 3.88508 4.08678 4.39721 4.47009 4.48978 4.69116 4.92315 4.99889 5.15289 5.17785 5.22447 5.31833 5.33540 5.43826 5.61478 5.64718 5.74682 5.77070 5.81032 5.92300 5.97144 5.98720 6.02885 6.12772 6.17858 6.30088 6.35822 6.55386 6.61120 6.71576 6.91778 7.20498 7.25319 7.38280 7.47852 7.82398 8.57017 9.03360 9.60577 11.11405 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032594 B = 0.003669 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.849363 B = 7629.768597 C = 8292.720060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 H 0.051 0.949 4 C -0.101 4.101 5 C 0.103 3.897 6 F -0.134 7.134 7 C -0.162 4.162 8 C -0.095 4.095 9 C -0.133 4.133 10 C -0.037 4.037 11 C -0.078 4.078 12 C 0.045 3.955 13 N -0.525 5.525 14 C 0.048 3.952 15 C -0.096 4.096 16 C -0.013 4.013 17 C -0.518 4.518 18 H 0.072 0.928 19 C 0.065 3.935 20 N -0.905 5.905 21 Si 0.880 3.120 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.029 0.971 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.015 0.985 40 H 0.009 0.991 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 0.835 25.139 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.013 3.987 3 H 0.068 0.932 4 C -0.102 4.102 5 C 0.083 3.917 6 F -0.113 7.113 7 C -0.181 4.181 8 C -0.113 4.113 9 C -0.151 4.151 10 C -0.037 4.037 11 C -0.115 4.115 12 C -0.083 4.083 13 N -0.250 5.250 14 C -0.079 4.079 15 C -0.134 4.134 16 C -0.051 4.051 17 C -0.556 4.556 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.544 5.544 21 Si 0.707 3.293 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.190 1.190 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.027 0.973 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.236 0.402 24.916 25.019 hybrid contribution -0.215 1.797 -0.164 1.817 sum 2.021 2.199 24.751 24.931 Atomic orbital electron populations 1.22279 0.93090 1.03281 1.03361 1.20330 0.96272 0.94600 0.87523 0.93153 1.19669 0.96993 0.99959 0.93574 1.17579 0.87414 0.92538 0.94171 1.91387 1.55403 1.67677 1.96812 1.21023 0.99817 0.99990 0.97238 1.20905 0.95023 0.97146 0.98228 1.21181 1.01070 1.00863 0.91969 1.19566 0.94145 0.94326 0.95712 1.20618 0.99019 1.00659 0.91171 1.22249 0.88392 0.97504 1.00169 1.62361 1.11429 1.49849 1.01345 1.22437 1.00812 0.95356 0.89258 1.21475 1.00766 0.98816 0.92310 1.19553 0.96176 0.95870 0.93526 1.21143 1.41250 1.03811 0.89366 0.91022 1.25039 0.95254 0.97310 0.95973 1.69916 1.48777 1.37483 0.98239 0.86777 0.79772 0.85006 0.77711 1.20388 1.21417 1.19017 0.91928 0.90266 0.91496 0.84929 0.85172 0.85382 0.89085 0.90077 0.88784 0.94649 0.90501 0.95230 0.92819 0.91889 0.96633 0.97317 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.46 37.16 0.31 -1.82 16 2 C 0.12 1.65 2.27 -69.05 -0.16 1.49 16 3 H 0.05 0.70 8.13 -51.93 -0.42 0.27 16 4 C -0.10 -1.28 5.47 -104.56 -0.57 -1.85 16 5 C 0.10 1.21 6.95 -39.32 -0.27 0.94 16 6 F -0.13 -1.63 13.77 2.25 0.03 -1.60 16 7 C -0.16 -1.56 10.02 -39.59 -0.40 -1.95 16 8 C -0.09 -0.81 10.05 -39.66 -0.40 -1.20 16 9 C -0.13 -1.23 9.65 -39.48 -0.38 -1.61 16 10 C -0.04 -0.42 5.77 -104.61 -0.60 -1.03 16 11 C -0.08 -0.84 5.94 -27.93 -0.17 -1.01 16 12 C 0.04 0.59 5.44 -3.73 -0.02 0.57 16 13 N -0.53 -7.77 4.43 -228.13 -1.01 -8.78 16 14 C 0.05 0.80 4.80 -3.82 -0.02 0.78 16 15 C -0.10 -1.90 5.13 -26.73 -0.14 -2.04 16 16 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 17 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 18 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 21 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 25 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 26 H 0.08 0.96 5.50 -51.93 -0.29 0.68 16 27 H 0.07 0.89 5.90 -51.93 -0.31 0.58 16 28 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 30 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.29 6.04 -51.93 -0.31 0.98 16 34 H 0.04 0.45 8.05 -51.92 -0.42 0.03 16 35 H 0.08 1.26 5.81 -51.93 -0.30 0.95 16 36 H 0.03 0.48 8.11 -51.93 -0.42 0.06 16 37 H 0.05 1.05 6.34 -51.93 -0.33 0.72 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 40 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 321.19 15.07 4.84 4.84 Total: -1.00 -31.14 321.19 -9.50 -40.64 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.11 Total: -2.37 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -3.35 Total: -22.57 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.24 Total: -36.19 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.03 Total: -1.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.14 -9.50 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577800424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.120 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds