Wall clock time and date at job start Mon Mar 30 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.29394 * 2 1 4 4 C 1.50617 * 109.29941 * 119.38078 * 2 1 3 5 5 C 1.38952 * 118.42039 * 317.74293 * 4 2 1 6 6 F 1.35097 * 119.83950 * 0.17227 * 5 4 2 7 7 C 1.38243 * 120.32055 * 180.14420 * 5 4 2 8 8 C 1.38223 * 119.83890 * 0.03729 * 7 5 4 9 9 C 1.38044 * 119.85905 * 359.91711 * 8 7 5 10 10 C 1.37796 * 121.86294 * 137.77793 * 4 2 1 11 11 C 1.50717 * 121.66233 * 359.70657 * 10 4 2 12 12 C 1.52897 * 109.96567 * 16.76186 * 11 10 4 13 13 N 1.46636 * 109.30223 * 240.41464 * 2 1 3 14 14 C 1.46903 * 110.99802 * 63.74546 * 13 2 1 15 15 C 1.53001 * 109.47150 * 189.99816 * 14 13 2 16 16 C 1.52997 * 109.47233 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47191 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99858 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00254 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00138 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99823 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47468 * 89.99679 * 21 19 17 23 23 H 1.48506 * 109.46921 * 209.99834 * 21 19 17 24 24 H 1.48498 * 109.46893 * 329.99071 * 21 19 17 25 25 H 1.08998 * 109.46929 * 188.80124 * 1 2 3 26 26 H 1.08998 * 109.47355 * 308.80050 * 1 2 3 27 27 H 1.08995 * 109.46762 * 68.80622 * 1 2 3 28 28 H 1.08002 * 120.08046 * 180.02562 * 7 5 4 29 29 H 1.07998 * 120.07080 * 179.97438 * 8 7 5 30 30 H 1.07997 * 119.80086 * 180.02562 * 9 8 7 31 31 H 1.08999 * 109.39418 * 256.61061 * 11 10 4 32 32 H 1.09004 * 109.30922 * 136.85617 * 11 10 4 33 33 H 1.09000 * 109.63519 * 189.95245 * 12 11 10 34 34 H 1.09007 * 109.79335 * 69.45882 * 12 11 10 35 35 H 1.09001 * 109.47228 * 309.99947 * 14 13 2 36 36 H 1.08997 * 109.47319 * 70.00111 * 14 13 2 37 37 H 1.09001 * 109.47162 * 300.00172 * 15 14 13 38 38 H 1.09006 * 109.46972 * 59.99745 * 15 14 13 39 39 H 1.09001 * 109.47193 * 300.00161 * 16 15 14 40 40 H 1.08997 * 109.47271 * 60.00273 * 16 15 14 41 41 H 0.96993 * 120.00084 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0279 -0.6974 1.2387 5 6 1.3928 -0.4342 2.4462 6 9 0.3531 0.4276 2.4851 7 6 1.8193 -1.0504 3.6079 8 6 2.8832 -1.9319 3.5682 9 6 3.5138 -2.1944 2.3686 10 6 3.0862 -1.5790 1.2015 11 6 3.8029 -1.9009 -0.0847 12 6 3.4761 -0.8463 -1.1425 13 7 2.0148 -0.6833 -1.2035 14 6 1.6162 0.0421 -2.4172 15 6 1.9168 -0.8174 -3.6468 16 6 1.5011 -0.0622 -4.9108 17 6 1.7977 -0.9085 -6.1220 18 1 2.2383 -1.8873 -6.0021 19 6 1.5057 -0.4338 -7.3831 20 7 1.7641 -1.1725 -8.4400 21 14 0.7431 1.2588 -7.5904 22 1 1.8189 2.2731 -7.7282 23 1 -0.1087 1.2723 -8.8068 24 1 -0.0875 1.5765 -6.4011 25 1 -0.3633 -1.0156 0.1572 26 1 -0.3634 0.6439 0.8009 27 1 -0.3633 0.3715 -0.9581 28 1 1.3226 -0.8433 4.5443 29 1 3.2198 -2.4150 4.4735 30 1 4.3447 -2.8837 2.3385 31 1 3.4853 -2.8809 -0.4406 32 1 4.8780 -1.9120 0.0948 33 1 3.8489 -1.1734 -2.1132 34 1 3.9395 0.1028 -0.8731 35 1 0.5486 0.2583 -2.3772 36 1 2.1739 0.9763 -2.4818 37 1 2.9844 -1.0336 -3.6868 38 1 1.3590 -1.7517 -3.5822 39 1 0.4334 0.1536 -4.8706 40 1 2.0584 0.8722 -4.9757 41 1 1.5591 -0.8384 -9.3272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577800424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:25 Heat of formation + Delta-G solvation = -40.235242 kcal Electronic energy + Delta-G solvation = -21435.411924 eV Core-core repulsion = 18228.421641 eV Total energy + Delta-G solvation = -3206.990283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.03493 -41.15713 -38.69794 -35.95260 -34.34216 -34.16504 -32.30543 -30.70910 -29.16927 -27.93277 -25.40774 -24.35725 -23.26713 -22.55584 -21.69323 -20.60918 -18.90729 -18.17543 -17.81017 -17.08739 -16.57540 -16.47587 -16.29000 -15.93783 -15.67808 -15.57411 -14.90396 -14.69205 -14.55774 -14.16476 -14.00676 -13.66361 -13.42737 -13.18370 -12.97016 -12.77696 -12.58821 -12.54825 -12.43728 -12.24489 -11.86785 -11.80469 -11.67208 -11.40694 -11.24281 -11.09786 -10.75687 -9.74395 -9.57888 -9.29037 -8.29113 -6.33132 0.19551 0.26185 1.35487 1.37772 1.49889 2.36428 2.60011 2.79351 3.06185 3.26471 3.50564 3.67716 3.95988 4.04330 4.08145 4.14466 4.18978 4.31740 4.33508 4.39712 4.54596 4.60018 4.66502 4.76599 4.78615 4.81584 4.92325 4.94690 4.99970 5.08799 5.12304 5.15364 5.18882 5.34814 5.40576 5.49561 5.56319 5.60183 5.66696 5.94622 6.08653 6.12200 6.30506 6.75013 7.31407 8.87903 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032594 B = 0.003669 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.849363 B = 7629.768597 C = 8292.720060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 H 0.045 0.955 4 C -0.124 4.124 5 C 0.082 3.918 6 F -0.142 7.142 7 C -0.161 4.161 8 C -0.087 4.087 9 C -0.130 4.130 10 C -0.053 4.053 11 C -0.072 4.072 12 C 0.041 3.959 13 N -0.534 5.534 14 C 0.059 3.941 15 C -0.085 4.085 16 C -0.010 4.010 17 C -0.531 4.531 18 H 0.031 0.969 19 C 0.002 3.998 20 N -0.953 5.953 21 Si 0.952 3.048 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.246 1.246 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.153 0.847 29 H 0.165 0.835 30 H 0.154 0.846 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.019 0.981 40 H 0.018 0.982 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 1.754 27.692 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.014 3.986 3 H 0.063 0.937 4 C -0.126 4.126 5 C 0.063 3.937 6 F -0.121 7.121 7 C -0.180 4.180 8 C -0.105 4.105 9 C -0.148 4.148 10 C -0.054 4.054 11 C -0.109 4.109 12 C -0.086 4.086 13 N -0.259 5.259 14 C -0.068 4.068 15 C -0.123 4.123 16 C -0.048 4.048 17 C -0.569 4.569 18 H 0.049 0.951 19 C -0.194 4.194 20 N -0.594 5.594 21 Si 0.775 3.225 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.170 1.170 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.171 0.829 29 H 0.183 0.817 30 H 0.172 0.828 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.478 1.314 27.495 27.638 hybrid contribution -0.223 1.386 -0.908 1.671 sum 2.255 2.700 26.588 26.819 Atomic orbital electron populations 1.22235 0.93085 1.02817 1.03329 1.20307 0.96318 0.94434 0.87555 0.93698 1.19688 0.98251 1.01293 0.93321 1.17818 0.87745 0.93330 0.94819 1.91354 1.55821 1.68068 1.96858 1.21360 0.99981 0.99425 0.97228 1.21339 0.93858 0.96058 0.99246 1.21506 1.01457 1.00447 0.91363 1.19719 0.94198 0.94792 0.96659 1.20600 1.00564 0.99363 0.90393 1.22311 0.87336 0.98477 1.00504 1.62310 1.12652 1.49752 1.01144 1.22182 1.01120 0.94746 0.88768 1.21268 1.00309 0.98272 0.92403 1.19491 0.96422 0.95694 0.93164 1.21494 1.40794 1.02979 0.91654 0.95100 1.26042 0.95818 1.02092 0.95460 1.70072 1.50364 1.39947 0.98980 0.85633 0.79264 0.79233 0.78365 1.19086 1.20967 1.16997 0.92824 0.89448 0.91993 0.82881 0.81736 0.82805 0.89577 0.87560 0.89945 0.94359 0.90237 0.94771 0.93012 0.93354 0.96255 0.96379 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 8.46 71.98 0.61 -3.48 16 2 C 0.12 3.27 2.27 44.20 0.10 3.37 16 3 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 4 C -0.12 -3.03 5.47 -19.82 -0.11 -3.13 16 5 C 0.08 1.84 6.95 22.44 0.16 1.99 16 6 F -0.14 -3.36 13.77 44.97 0.62 -2.74 16 7 C -0.16 -2.67 10.02 22.27 0.22 -2.44 16 8 C -0.09 -1.15 10.05 22.22 0.22 -0.93 16 9 C -0.13 -1.99 9.65 22.33 0.22 -1.77 16 10 C -0.05 -1.12 5.77 -19.85 -0.11 -1.24 16 11 C -0.07 -1.47 5.94 29.82 0.18 -1.29 16 12 C 0.04 1.06 5.44 86.22 0.47 1.53 16 13 N -0.53 -15.67 4.43 -875.68 -3.88 -19.56 16 14 C 0.06 1.93 4.80 86.30 0.41 2.35 16 15 C -0.08 -3.39 5.13 30.59 0.16 -3.23 16 16 C -0.01 -0.47 4.04 29.85 0.12 -0.34 16 17 C -0.53 -31.34 9.66 25.60 0.25 -31.09 16 18 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 19 C 0.00 0.14 5.47 84.65 0.46 0.60 16 20 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 21 Si 0.95 44.91 27.47 68.60 1.88 46.79 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 25 H 0.05 1.46 8.12 -2.39 -0.02 1.44 16 26 H 0.09 2.10 5.50 -2.39 -0.01 2.08 16 27 H 0.06 1.63 5.90 -2.39 -0.01 1.61 16 28 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 30 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.08 2.27 6.04 -2.39 -0.01 2.26 16 34 H 0.04 0.95 8.05 -2.38 -0.02 0.93 16 35 H 0.08 2.55 5.81 -2.39 -0.01 2.53 16 36 H 0.03 1.08 8.11 -2.39 -0.02 1.06 16 37 H 0.05 2.07 6.34 -2.39 -0.02 2.05 16 38 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 40 H 0.02 0.82 7.57 -2.39 -0.02 0.81 16 41 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -68.60 321.19 3.23 -65.37 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.96 Total: 9.74 kcal Atomic # 6 Polarization: -42.47 SS G_CDS: 3.35 Total: -39.12 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -3.58 Total: -80.05 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.62 Total: -2.74 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -68.60 3.23 -65.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577800424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.135 kcal (2) G-P(sol) polarization free energy of solvation -68.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds