Wall clock time and date at job start Mon Mar 30 2020 02:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46491 * 2 1 4 4 C 1.52998 * 109.47485 * 240.00021 * 2 1 3 5 5 C 1.53000 * 117.49910 * 128.61645 * 4 2 1 6 6 C 1.53002 * 60.00329 * 252.51189 * 5 4 2 7 7 N 1.46494 * 109.47071 * 119.99568 * 2 1 3 8 8 C 1.35814 * 126.05082 * 35.00603 * 7 2 1 9 9 C 1.35755 * 107.56144 * 180.02562 * 8 7 2 10 10 N 1.40765 * 126.08137 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99854 * 179.97438 * 10 9 8 12 12 O 1.21303 * 120.00450 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72930 * 11 10 9 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 C 1.50700 * 109.47208 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99770 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00083 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99715 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00278 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46986 * 89.99874 * 19 17 15 21 21 H 1.48492 * 109.47096 * 210.00135 * 19 17 15 22 22 H 1.48497 * 109.46659 * 329.99959 * 19 17 15 23 23 C 1.40256 * 107.84136 * 0.24533 * 9 8 7 24 24 N 1.30835 * 108.33208 * 359.58580 * 23 9 8 25 25 H 1.09000 * 109.47051 * 60.00518 * 1 2 3 26 26 H 1.09000 * 109.46717 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47597 * 300.00206 * 1 2 3 28 28 H 1.09002 * 115.55031 * 274.33188 * 4 2 1 29 29 H 1.08996 * 117.50172 * 0.02562 * 5 4 2 30 30 H 1.09000 * 117.49818 * 145.01948 * 5 4 2 31 31 H 1.09003 * 117.49773 * 252.51188 * 6 5 4 32 32 H 1.08993 * 117.51479 * 107.48132 * 6 5 4 33 33 H 1.07992 * 126.22132 * 0.06522 * 8 7 2 34 34 H 0.97001 * 119.99661 * 0.02562 * 10 9 8 35 35 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 36 36 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 37 37 H 1.08995 * 109.46638 * 300.00002 * 14 13 11 38 38 H 1.08998 * 109.46846 * 59.99549 * 14 13 11 39 39 H 0.97012 * 120.00031 * 180.02562 * 18 17 15 40 40 H 1.07995 * 125.83761 * 179.76181 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.0742 0.0053 -2.1116 6 6 1.6358 -0.1495 -2.6096 7 7 2.0183 -0.6905 1.1962 8 6 1.4368 -1.7626 1.7935 9 6 2.1981 -2.0965 2.8668 10 7 1.9499 -3.1535 3.7627 11 6 2.7912 -3.3763 4.7918 12 8 3.7621 -2.6657 4.9462 13 6 2.5221 -4.5041 5.7544 14 6 3.6158 -4.5336 6.8240 15 6 3.3470 -5.6618 7.7863 16 1 2.4824 -6.2942 7.6490 17 6 4.2049 -5.8865 8.8420 18 7 5.2574 -5.1161 9.0094 19 14 3.8714 -7.2846 10.0352 20 1 4.5410 -8.5186 9.5515 21 1 4.4001 -6.9276 11.3761 22 1 2.4078 -7.5188 10.1265 23 6 3.2726 -1.1971 2.9280 24 7 3.1673 -0.3615 1.9267 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 2.1268 -1.8045 -1.1642 29 1 3.3914 0.9968 -1.7889 30 1 3.8417 -0.6000 -2.5941 31 1 1.4570 -0.8566 -3.4197 32 1 1.0062 0.7402 -2.6146 33 1 0.5333 -2.2597 1.4727 34 1 1.1737 -3.7219 3.6390 35 1 1.5530 -4.3526 6.2298 36 1 2.5175 -5.4503 5.2134 37 1 4.5848 -4.6850 6.3486 38 1 3.6204 -3.5873 7.3650 39 1 5.8613 -5.2744 9.7520 40 1 4.0549 -1.1962 3.6725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579339712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:41 Heat of formation + Delta-G solvation = 57.665596 kcal Electronic energy + Delta-G solvation = -20511.530993 eV Core-core repulsion = 17328.705970 eV Total energy + Delta-G solvation = -3182.825023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28248 -39.13193 -38.10270 -34.52064 -33.50346 -33.36800 -31.05000 -29.67780 -28.70656 -25.80485 -24.64408 -22.70103 -22.32559 -21.93518 -20.67613 -20.13184 -19.27852 -17.65493 -16.82374 -16.05294 -15.69955 -15.49527 -15.21568 -14.98168 -14.42813 -14.12953 -13.98218 -13.51378 -13.26584 -12.87905 -12.71684 -12.45244 -12.33934 -12.16994 -11.85155 -11.53382 -11.16436 -10.94020 -10.89845 -10.73099 -10.59799 -10.45463 -10.40717 -9.96267 -9.65042 -9.28342 -9.17536 -9.03339 -8.31801 -7.52344 -5.95459 -3.99935 1.84255 2.34160 2.77865 3.34105 3.35131 3.40030 3.42419 3.51379 3.55926 4.13825 4.36194 4.48245 4.51102 4.64766 4.71118 4.74795 4.92004 5.09422 5.17327 5.22899 5.39630 5.41110 5.48774 5.50787 5.59455 5.68411 5.72661 5.83214 5.83764 6.19937 6.22111 6.44665 6.87150 6.99633 7.14910 7.71997 7.75007 7.86337 7.91770 8.07460 8.38576 8.72372 9.08425 9.63639 11.15444 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.051594 B = 0.002667 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.569831 B =10494.882802 C =10685.029402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.199 3.801 3 H 0.100 0.900 4 C -0.171 4.171 5 C -0.171 4.171 6 C -0.170 4.170 7 N -0.369 5.369 8 C 0.002 3.998 9 C 0.016 3.984 10 N -0.658 5.658 11 C 0.511 3.489 12 O -0.521 6.521 13 C -0.127 4.127 14 C 0.037 3.963 15 C -0.528 4.528 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.050 3.950 24 N -0.287 5.287 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.171 0.829 34 H 0.406 0.594 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.270 8.955 -22.720 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.097 3.903 3 H 0.118 0.882 4 C -0.190 4.190 5 C -0.208 4.208 6 C -0.208 4.208 7 N -0.155 5.155 8 C -0.145 4.145 9 C -0.088 4.088 10 N -0.305 5.305 11 C 0.301 3.699 12 O -0.396 6.396 13 C -0.167 4.167 14 C -0.001 4.001 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.137 4.137 24 N -0.108 5.108 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.188 0.812 34 H 0.241 0.759 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.925 10.527 -23.110 27.645 hybrid contribution -0.924 -1.901 0.974 2.327 sum -11.849 8.625 -22.137 26.549 Atomic orbital electron populations 1.22144 0.92775 1.03529 1.03429 1.20639 0.94191 0.95789 0.79703 0.88210 1.22696 1.05253 1.00016 0.91032 1.23038 0.92493 1.02171 1.03120 1.22978 0.98446 1.03178 0.96150 1.48356 1.19986 1.24489 1.22676 1.21694 1.01318 0.94679 0.96761 1.17903 0.99183 0.96217 0.95545 1.43274 1.29138 1.30699 1.27343 1.21706 0.81579 0.86300 0.80332 1.90548 1.28434 1.48037 1.72532 1.21870 1.03808 0.94266 0.96715 1.18914 0.92329 0.97558 0.91303 1.21209 1.09959 1.14664 1.10762 0.92584 1.25024 0.95151 0.96409 0.97809 1.69999 1.13756 1.38293 1.30715 0.86589 0.78395 0.82432 0.80515 1.20682 1.21234 1.19901 1.24618 0.99457 0.92283 0.97334 1.77371 1.02590 1.23814 1.07008 0.90123 0.91381 0.91351 0.87285 0.88375 0.88589 0.88408 0.88427 0.81229 0.75921 0.89953 0.89975 0.95684 0.95670 0.92933 0.77666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 8.68 37.16 0.32 -0.63 16 2 C 0.20 1.71 3.55 -67.93 -0.24 1.47 16 3 H 0.10 0.87 7.90 -51.93 -0.41 0.46 16 4 C -0.17 -1.33 5.45 -90.62 -0.49 -1.83 16 5 C -0.17 -1.26 10.18 -26.73 -0.27 -1.53 16 6 C -0.17 -0.95 9.74 -26.73 -0.26 -1.21 16 7 N -0.37 -4.55 3.55 -54.53 -0.19 -4.75 16 8 C 0.00 0.02 10.65 -16.68 -0.18 -0.15 16 9 C 0.02 0.24 6.90 -83.88 -0.58 -0.33 16 10 N -0.66 -9.60 5.47 -10.03 -0.05 -9.65 16 11 C 0.51 9.71 7.80 -10.98 -0.09 9.62 16 12 O -0.52 -11.87 13.14 5.54 0.07 -11.80 16 13 C -0.13 -2.49 5.64 -27.88 -0.16 -2.65 16 14 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 15 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 19 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.05 0.87 10.84 -17.22 -0.19 0.68 16 24 N -0.29 -4.57 12.56 30.70 0.39 -4.19 16 25 H 0.08 0.33 7.29 -51.93 -0.38 -0.05 16 26 H 0.07 0.37 7.17 -51.93 -0.37 -0.01 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.43 7.61 -51.93 -0.39 0.03 16 33 H 0.17 1.35 7.29 -52.49 -0.38 0.96 16 34 H 0.41 4.33 8.83 -40.82 -0.36 3.97 16 35 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.26 7.55 8.31 -40.81 -0.34 7.21 16 40 H 0.21 3.92 5.92 -52.49 -0.31 3.61 16 LS Contribution 338.27 15.07 5.10 5.10 Total: -1.00 -34.68 338.27 -7.58 -42.26 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.95 Total: 2.34 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -2.66 Total: -9.28 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.87 Total: -45.20 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.07 Total: -11.80 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.68 -7.58 -42.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579339712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.930 kcal (2) G-P(sol) polarization free energy of solvation -34.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds