Wall clock time and date at job start Mon Mar 30 2020 02:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47201 * 2 1 4 4 C 1.50696 * 109.47182 * 120.00157 * 2 1 3 5 5 H 1.08006 * 119.99738 * 119.99600 * 4 2 1 6 6 C 1.37869 * 120.00390 * 299.99972 * 4 2 1 7 7 N 1.31514 * 119.99703 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00466 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46907 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47043 * 119.99582 * 8 6 4 11 11 H 1.48492 * 109.47322 * 239.99998 * 8 6 4 12 12 N 1.46499 * 109.46902 * 240.00278 * 2 1 3 13 13 C 1.34776 * 120.00047 * 84.99854 * 12 2 1 14 14 O 1.21286 * 120.00204 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00298 * 180.02562 * 13 12 2 16 16 H 1.09006 * 109.74817 * 59.37170 * 15 13 12 17 17 C 1.53367 * 109.72013 * 179.97438 * 15 13 12 18 18 C 1.53026 * 109.74720 * 69.02497 * 17 15 13 19 19 H 1.09006 * 109.43124 * 311.65563 * 18 17 15 20 20 C 1.52994 * 109.43338 * 191.80631 * 18 17 15 21 21 C 1.53389 * 109.71940 * 71.72818 * 18 17 15 22 22 C 1.50884 * 108.19440 * 309.45948 * 21 18 17 23 23 C 1.34563 * 128.32803 * 196.73804 * 22 21 18 24 24 N 1.35205 * 107.62018 * 179.71335 * 23 22 21 25 25 H 0.96993 * 126.00092 * 180.02562 * 24 23 22 26 26 N 1.40309 * 107.98860 * 0.04622 * 24 23 22 27 27 C 1.30125 * 108.12505 * 0.03435 * 26 24 23 28 28 H 1.09004 * 109.46892 * 299.99720 * 1 2 3 29 29 H 1.08998 * 109.47469 * 59.99557 * 1 2 3 30 30 H 1.09001 * 109.47201 * 179.97438 * 1 2 3 31 31 H 0.97005 * 120.00387 * 180.02562 * 7 6 4 32 32 H 0.96997 * 120.00318 * 265.00485 * 12 2 1 33 33 H 1.09005 * 109.42651 * 308.94538 * 17 15 13 34 34 H 1.08995 * 109.38080 * 189.08153 * 17 15 13 35 35 H 1.08997 * 109.47079 * 59.99704 * 20 18 17 36 36 H 1.09002 * 109.47458 * 180.02562 * 20 18 17 37 37 H 1.09003 * 109.47266 * 300.00261 * 20 18 17 38 38 H 1.09002 * 109.71725 * 69.13388 * 21 18 17 39 39 H 1.09003 * 109.72104 * 189.78306 * 21 18 17 40 40 H 1.08002 * 126.19191 * 359.70136 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8301 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.1466 -2.2872 3.6036 10 1 3.1468 -0.1876 4.8164 11 1 1.1662 -1.5868 4.8159 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8581 1.1585 -2.4117 15 6 2.6487 -0.7286 -3.5879 16 1 1.9849 -1.5585 -3.8304 17 6 2.7020 0.2520 -4.7659 18 6 3.8073 1.2837 -4.5302 19 1 3.7182 1.6865 -3.5213 20 6 3.6676 2.4201 -5.5450 21 6 5.1797 0.6186 -4.6947 22 6 5.2008 -0.6327 -3.8519 23 6 6.2659 -1.3502 -3.4499 24 7 5.8070 -2.3840 -2.7091 25 1 6.3497 -3.0681 -2.2870 26 7 4.4077 -2.2934 -2.6586 27 6 4.0448 -1.2476 -3.3426 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.7096 1.1617 3.4844 32 1 2.2489 -1.6317 -1.1528 33 1 1.7431 0.7624 -4.8564 34 1 2.9085 -0.2971 -5.6845 35 1 2.6943 2.8961 -5.4257 36 1 4.4549 3.1552 -5.3780 37 1 3.7543 2.0185 -6.5546 38 1 5.3399 0.3598 -5.7413 39 1 5.9614 1.3006 -4.3601 40 1 7.3002 -1.1388 -3.6779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590431825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:07 Heat of formation + Delta-G solvation = 15.626841 kcal Electronic energy + Delta-G solvation = -22195.788562 eV Core-core repulsion = 19011.140602 eV Total energy + Delta-G solvation = -3184.647960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47363 -38.98691 -36.59728 -34.60628 -32.85303 -32.01508 -30.79626 -29.70573 -28.62229 -26.01600 -25.20186 -24.22686 -21.70409 -20.79111 -20.51820 -19.64522 -18.55854 -17.55052 -16.74285 -15.72021 -15.18298 -15.05102 -14.83709 -14.33154 -14.15646 -13.62692 -13.47273 -13.10902 -12.84234 -12.35810 -12.27097 -12.21018 -12.10755 -11.60954 -11.47853 -11.03164 -10.93082 -10.91636 -10.66076 -10.50802 -10.42431 -10.21333 -10.17917 -10.05935 -9.61969 -8.96677 -8.71567 -8.49128 -8.30041 -7.77619 -6.06835 -4.14784 1.98479 2.76547 2.89565 3.26264 3.33716 3.37398 3.55349 4.22096 4.45794 4.57553 4.76022 4.97372 5.10884 5.21126 5.25357 5.39984 5.56439 5.64729 5.69560 5.78428 5.81335 5.91754 5.97380 6.04567 6.08530 6.27214 6.42433 6.44321 6.73283 6.76561 6.89868 7.04408 7.22501 7.36809 7.55547 7.65882 7.76744 7.77511 7.99832 8.21987 8.78784 8.85714 9.23352 9.52597 10.99310 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.005579 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.145690 B = 5017.918863 C = 5889.087030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.702 5.702 13 C 0.513 3.487 14 O -0.548 6.548 15 C -0.033 4.033 16 H 0.105 0.895 17 C -0.086 4.086 18 C -0.095 4.095 19 H 0.090 0.910 20 C -0.141 4.141 21 C -0.036 4.036 22 C -0.228 4.228 23 C 0.055 3.945 24 N -0.482 5.482 25 H 0.438 0.562 26 N -0.276 5.276 27 C 0.093 3.907 28 H 0.089 0.911 29 H 0.015 0.985 30 H 0.026 0.974 31 H 0.263 0.737 32 H 0.392 0.608 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.239 -3.741 -15.295 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.349 5.349 13 C 0.296 3.704 14 O -0.427 6.427 15 C -0.056 4.056 16 H 0.123 0.877 17 C -0.125 4.125 18 C -0.113 4.113 19 H 0.108 0.892 20 C -0.198 4.198 21 C -0.074 4.074 22 C -0.239 4.239 23 C -0.091 4.091 24 N -0.191 5.191 25 H 0.282 0.718 26 N -0.098 5.098 27 C -0.076 4.076 28 H 0.108 0.892 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.225 0.775 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 8.559 -3.755 -14.446 17.206 hybrid contribution 1.146 -0.774 0.803 1.599 sum 9.705 -4.529 -13.644 17.345 Atomic orbital electron populations 1.22071 0.98475 0.99076 1.00873 1.18726 0.90976 0.93903 0.80150 0.93486 1.21271 1.31989 1.13025 0.90354 0.92161 1.24875 0.94912 0.94990 0.98970 1.69917 1.36187 1.22551 1.23619 0.86419 0.78608 0.79538 0.82689 1.19824 1.20950 1.20852 1.46518 1.64252 1.13861 1.10294 1.20000 0.78628 0.87332 0.84483 1.90632 1.51630 1.15592 1.84860 1.20001 0.90503 0.99018 0.96090 0.87664 1.21396 1.00331 0.95711 0.95013 1.21223 0.93222 0.95175 1.01697 0.89181 1.21760 1.01898 0.97920 0.98213 1.20089 0.97775 0.92128 0.97390 1.20110 0.91470 1.02519 1.09809 1.21991 0.99566 0.90698 0.96806 1.46272 1.05364 1.24253 1.43187 0.71820 1.77022 0.89644 1.20864 1.22254 1.21861 0.95780 0.93401 0.96576 0.89207 0.96585 0.95519 0.92731 0.77523 0.90115 0.91629 0.92335 0.92985 0.93223 0.91562 0.91487 0.80913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.42 16 2 C 0.26 7.03 2.56 -69.08 -0.18 6.85 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.66 8.73 -34.45 -0.30 -14.96 16 5 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.56 11.32 55.43 0.63 -24.94 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.70 -15.83 4.98 -54.93 -0.27 -16.10 16 13 C 0.51 10.70 6.74 -10.98 -0.07 10.63 16 14 O -0.55 -13.00 14.03 5.55 0.08 -12.92 16 15 C -0.03 -0.52 3.06 -92.61 -0.28 -0.81 16 16 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 17 C -0.09 -1.19 4.27 -26.53 -0.11 -1.30 16 18 C -0.09 -1.31 2.48 -90.41 -0.22 -1.53 16 19 H 0.09 1.60 6.27 -51.93 -0.33 1.27 16 20 C -0.14 -1.60 9.15 37.15 0.34 -1.26 16 21 C -0.04 -0.42 5.57 -27.59 -0.15 -0.58 16 22 C -0.23 -3.13 5.89 -104.99 -0.62 -3.75 16 23 C 0.05 0.63 11.95 -17.37 -0.21 0.42 16 24 N -0.48 -5.96 7.37 30.35 0.22 -5.74 16 25 H 0.44 3.91 8.96 -182.44 -1.64 2.28 16 26 N -0.28 -4.45 12.53 33.75 0.42 -4.03 16 27 C 0.09 1.48 6.22 -82.34 -0.51 0.97 16 28 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.39 8.31 8.32 -40.82 -0.34 7.97 16 33 H 0.08 1.16 7.77 -51.93 -0.40 0.75 16 34 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 324.59 15.07 4.89 4.89 Total: -1.00 -32.76 324.59 -8.31 -41.06 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.18 Total: 8.48 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.08 Total: -7.02 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 1.00 Total: -50.81 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.76 -8.31 -41.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590431825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.691 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds