Wall clock time and date at job start Mon Mar 30 2020 02:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47201 * 2 1 4 4 C 1.50696 * 109.47182 * 120.00157 * 2 1 3 5 5 H 1.08006 * 119.99738 * 119.99600 * 4 2 1 6 6 C 1.37869 * 120.00390 * 299.99972 * 4 2 1 7 7 N 1.31514 * 119.99703 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00466 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46907 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47043 * 119.99582 * 8 6 4 11 11 H 1.48492 * 109.47322 * 239.99998 * 8 6 4 12 12 N 1.46499 * 109.46902 * 240.00278 * 2 1 3 13 13 C 1.34776 * 120.00047 * 84.99854 * 12 2 1 14 14 O 1.21286 * 120.00204 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00298 * 180.02562 * 13 12 2 16 16 H 1.09006 * 109.74817 * 59.37170 * 15 13 12 17 17 C 1.53367 * 109.72013 * 179.97438 * 15 13 12 18 18 C 1.53026 * 109.74720 * 69.02497 * 17 15 13 19 19 H 1.09006 * 109.43124 * 311.65563 * 18 17 15 20 20 C 1.52994 * 109.43338 * 191.80631 * 18 17 15 21 21 C 1.53389 * 109.71940 * 71.72818 * 18 17 15 22 22 C 1.50884 * 108.19440 * 309.45948 * 21 18 17 23 23 C 1.34563 * 128.32803 * 196.73804 * 22 21 18 24 24 N 1.35205 * 107.62018 * 179.71335 * 23 22 21 25 25 H 0.96993 * 126.00092 * 180.02562 * 24 23 22 26 26 N 1.40309 * 107.98860 * 0.04622 * 24 23 22 27 27 C 1.30125 * 108.12505 * 0.03435 * 26 24 23 28 28 H 1.09004 * 109.46892 * 299.99720 * 1 2 3 29 29 H 1.08998 * 109.47469 * 59.99557 * 1 2 3 30 30 H 1.09001 * 109.47201 * 179.97438 * 1 2 3 31 31 H 0.97005 * 120.00387 * 180.02562 * 7 6 4 32 32 H 0.96997 * 120.00318 * 265.00485 * 12 2 1 33 33 H 1.09005 * 109.42651 * 308.94538 * 17 15 13 34 34 H 1.08995 * 109.38080 * 189.08153 * 17 15 13 35 35 H 1.08997 * 109.47079 * 59.99704 * 20 18 17 36 36 H 1.09002 * 109.47458 * 180.02562 * 20 18 17 37 37 H 1.09003 * 109.47266 * 300.00261 * 20 18 17 38 38 H 1.09002 * 109.71725 * 69.13388 * 21 18 17 39 39 H 1.09003 * 109.72104 * 189.78306 * 21 18 17 40 40 H 1.08002 * 126.19191 * 359.70136 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8301 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.1466 -2.2872 3.6036 10 1 3.1468 -0.1876 4.8164 11 1 1.1662 -1.5868 4.8159 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8581 1.1585 -2.4117 15 6 2.6487 -0.7286 -3.5879 16 1 1.9849 -1.5585 -3.8304 17 6 2.7020 0.2520 -4.7659 18 6 3.8073 1.2837 -4.5302 19 1 3.7182 1.6865 -3.5213 20 6 3.6676 2.4201 -5.5450 21 6 5.1797 0.6186 -4.6947 22 6 5.2008 -0.6327 -3.8519 23 6 6.2659 -1.3502 -3.4499 24 7 5.8070 -2.3840 -2.7091 25 1 6.3497 -3.0681 -2.2870 26 7 4.4077 -2.2934 -2.6586 27 6 4.0448 -1.2476 -3.3426 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.7096 1.1617 3.4844 32 1 2.2489 -1.6317 -1.1528 33 1 1.7431 0.7624 -4.8564 34 1 2.9085 -0.2971 -5.6845 35 1 2.6943 2.8961 -5.4257 36 1 4.4549 3.1552 -5.3780 37 1 3.7543 2.0185 -6.5546 38 1 5.3399 0.3598 -5.7413 39 1 5.9614 1.3006 -4.3601 40 1 7.3002 -1.1388 -3.6779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590431825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:07 Heat of formation + Delta-G solvation = -7.063833 kcal Electronic energy + Delta-G solvation = -22196.772503 eV Core-core repulsion = 19011.140602 eV Total energy + Delta-G solvation = -3185.631901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.54291 -40.58348 -37.85916 -36.53420 -34.47668 -33.61514 -31.79143 -31.02694 -30.37964 -27.37645 -26.93727 -25.52480 -23.25523 -22.10292 -21.60037 -21.30062 -20.05289 -18.54682 -18.46508 -17.39940 -17.16249 -16.33501 -16.16024 -15.88395 -15.34794 -14.96780 -14.83240 -14.50589 -14.27450 -13.96400 -13.78641 -13.40603 -13.27500 -13.07666 -12.93942 -12.86251 -12.71651 -12.54854 -12.31014 -12.16955 -11.96686 -11.55215 -11.51710 -11.13486 -11.12117 -10.90486 -10.63930 -10.16495 -9.70425 -9.29335 -8.20664 -6.37923 0.97110 1.39644 1.39758 1.52566 1.60111 1.84264 2.14100 2.34009 2.70182 3.08848 3.51042 3.69678 3.90556 4.03433 4.14690 4.32433 4.42945 4.56711 4.64468 4.73314 4.77982 4.90016 4.91269 4.92698 4.97669 5.06580 5.07317 5.12219 5.29608 5.40324 5.42120 5.48171 5.58195 5.67411 5.70296 5.71757 5.89181 6.08532 6.52847 6.69353 6.73491 6.96061 7.29082 7.53662 8.85899 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.005579 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.145690 B = 5017.918863 C = 5889.087030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H -0.003 1.003 4 C -0.545 4.545 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.704 5.704 13 C 0.509 3.491 14 O -0.582 6.582 15 C -0.025 4.025 16 H 0.121 0.879 17 C -0.083 4.083 18 C -0.096 4.096 19 H 0.040 0.960 20 C -0.135 4.135 21 C -0.028 4.028 22 C -0.254 4.254 23 C 0.074 3.926 24 N -0.474 5.474 25 H 0.452 0.548 26 N -0.314 5.314 27 C 0.071 3.929 28 H 0.068 0.932 29 H 0.015 0.985 30 H 0.038 0.962 31 H 0.266 0.734 32 H 0.399 0.601 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.402 -5.236 -16.470 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.015 0.985 4 C -0.583 4.583 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.199 1.199 12 N -0.351 5.351 13 C 0.294 3.706 14 O -0.463 6.463 15 C -0.048 4.048 16 H 0.139 0.861 17 C -0.121 4.121 18 C -0.115 4.115 19 H 0.058 0.942 20 C -0.192 4.192 21 C -0.066 4.066 22 C -0.265 4.265 23 C -0.072 4.072 24 N -0.184 5.184 25 H 0.298 0.702 26 N -0.137 5.137 27 C -0.097 4.097 28 H 0.087 0.913 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.234 0.766 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 10.727 -5.278 -15.643 19.688 hybrid contribution 0.518 -0.280 1.161 1.302 sum 11.245 -5.558 -14.482 19.159 Atomic orbital electron populations 1.21881 0.98045 0.99373 0.99766 1.18331 0.91251 0.91692 0.81897 0.98482 1.21500 1.32464 1.13267 0.91115 0.91970 1.25779 0.94857 0.95611 1.02174 1.70052 1.36954 1.23813 1.24589 0.85301 0.78234 0.78411 0.78405 1.18955 1.20620 1.19938 1.46339 1.64802 1.14078 1.09923 1.20887 0.77342 0.87036 0.85298 1.90609 1.52752 1.17353 1.85582 1.19947 0.91445 0.99477 0.93901 0.86115 1.21441 0.99933 0.95500 0.95235 1.21165 0.94770 0.95968 0.99583 0.94186 1.21713 1.01355 0.97267 0.98901 1.20084 0.96396 0.91323 0.98756 1.20471 0.91355 1.03650 1.11022 1.22686 1.01099 0.88946 0.94455 1.46342 1.04344 1.24860 1.42847 0.70155 1.76922 0.91876 1.21684 1.23245 1.21857 0.95973 0.94155 0.97675 0.91344 0.96544 0.94318 0.92432 0.76642 0.91361 0.88336 0.93868 0.92206 0.90513 0.88757 0.90602 0.76270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.04 9.26 71.98 0.67 -6.37 16 2 C 0.27 15.08 2.56 44.24 0.11 15.20 16 3 H 0.00 -0.18 7.58 -2.39 -0.02 -0.19 16 4 C -0.55 -30.89 8.73 25.60 0.22 -30.66 16 5 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 6 C 0.02 0.89 5.30 84.65 0.45 1.33 16 7 N -0.92 -54.15 11.32 21.44 0.24 -53.90 16 8 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 N -0.70 -32.83 4.98 -446.09 -2.22 -35.06 16 13 C 0.51 22.05 6.74 87.66 0.59 22.64 16 14 O -0.58 -29.21 14.03 -3.05 -0.04 -29.25 16 15 C -0.02 -0.79 3.06 -12.08 -0.04 -0.82 16 16 H 0.12 3.41 8.14 -2.38 -0.02 3.39 16 17 C -0.08 -2.23 4.27 30.73 0.13 -2.09 16 18 C -0.10 -2.59 2.48 -10.66 -0.03 -2.61 16 19 H 0.04 1.48 6.27 -2.38 -0.01 1.46 16 20 C -0.14 -2.89 9.15 71.98 0.66 -2.23 16 21 C -0.03 -0.58 5.57 30.04 0.17 -0.42 16 22 C -0.25 -6.40 5.89 -20.10 -0.12 -6.52 16 23 C 0.07 1.44 11.95 83.33 1.00 2.43 16 24 N -0.47 -10.58 7.37 -57.88 -0.43 -11.01 16 25 H 0.45 6.93 8.96 -213.19 -1.91 5.02 16 26 N -0.31 -9.81 12.53 -47.13 -0.59 -10.40 16 27 C 0.07 2.21 6.22 43.44 0.27 2.48 16 28 H 0.07 3.94 6.07 -2.38 -0.01 3.93 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 32 H 0.40 17.33 8.32 -92.71 -0.77 16.56 16 33 H 0.07 1.97 7.77 -2.38 -0.02 1.95 16 34 H 0.10 2.00 8.10 -2.39 -0.02 1.98 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.48 8.13 -2.39 -0.02 1.46 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.22 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -74.23 324.59 1.45 -72.78 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -1.62 Total: 28.66 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 4.08 Total: -7.65 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -3.00 Total: -110.37 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.04 Total: -29.25 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -74.23 1.45 -72.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590431825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.713 kcal (2) G-P(sol) polarization free energy of solvation -74.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds