Wall clock time and date at job start Mon Mar 30 2020 02:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.58306 * 2 1 4 4 C 1.53273 * 109.68697 * 120.33589 * 2 1 3 5 5 C 1.53156 * 109.43417 * 170.09765 * 4 2 1 6 6 C 1.53238 * 109.35802 * 290.79932 * 5 4 2 7 7 C 1.51117 * 108.32088 * 48.53093 * 6 5 4 8 8 N 1.30548 * 127.09671 * 164.09399 * 7 6 5 9 9 C 1.33463 * 109.68618 * 180.33122 * 8 7 6 10 10 C 1.36836 * 107.83202 * 359.97438 * 9 8 7 11 11 C 1.46766 * 126.91011 * 179.97438 * 10 9 8 12 12 O 1.21683 * 119.99914 * 201.81827 * 11 10 9 13 13 N 1.34776 * 119.99841 * 21.81073 * 11 10 9 14 14 C 1.46504 * 119.99703 * 185.62336 * 13 11 10 15 15 C 1.53001 * 109.47005 * 180.02562 * 14 13 11 16 16 C 1.50693 * 109.46973 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00463 * 359.97438 * 16 15 14 18 18 C 1.37886 * 119.99987 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99601 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47151 * 89.99522 * 20 18 16 22 22 H 1.48499 * 109.46967 * 209.99603 * 20 18 16 23 23 H 1.48505 * 109.47033 * 329.99483 * 20 18 16 24 24 N 1.34874 * 123.91174 * 344.40617 * 7 6 5 25 25 H 1.09001 * 109.47117 * 153.76562 * 1 2 3 26 26 H 1.08994 * 109.46846 * 273.76625 * 1 2 3 27 27 H 1.09001 * 109.46846 * 33.76579 * 1 2 3 28 28 H 1.08992 * 109.47401 * 290.08489 * 4 2 1 29 29 H 1.08999 * 109.47581 * 50.10857 * 4 2 1 30 30 H 1.08999 * 109.51456 * 50.58063 * 5 4 2 31 31 H 1.08999 * 109.51386 * 170.72876 * 5 4 2 32 32 H 1.09001 * 109.56820 * 288.88910 * 6 5 4 33 33 H 1.09002 * 109.78309 * 168.30504 * 6 5 4 34 34 H 1.07998 * 126.08265 * 179.97438 * 9 8 7 35 35 H 0.96999 * 119.99887 * 5.63687 * 13 11 10 36 36 H 1.08996 * 109.47000 * 300.00728 * 14 13 11 37 37 H 1.09002 * 109.46832 * 60.00343 * 14 13 11 38 38 H 1.09008 * 109.46977 * 300.00016 * 15 14 13 39 39 H 1.08992 * 109.46951 * 60.00119 * 15 14 13 40 40 H 0.97005 * 119.99978 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7289 1.2455 5 6 3.5577 -0.9435 1.1205 6 6 3.8354 -1.9698 0.0170 7 6 3.0411 -1.5776 -1.2073 8 7 3.2119 -2.0079 -2.4279 9 6 2.3229 -1.4286 -3.2374 10 6 1.5519 -0.5889 -2.4806 11 6 0.4472 0.2559 -2.9497 12 8 0.1049 1.2261 -2.3000 13 7 -0.1881 -0.0430 -4.1001 14 6 -1.2065 0.8660 -4.6320 15 6 -1.7677 0.2960 -5.9363 16 6 -2.8147 1.2314 -6.4837 17 1 -3.0562 2.1411 -5.9542 18 6 -3.4654 0.9252 -7.6602 19 7 -3.1717 -0.1829 -8.3048 20 14 -4.7638 2.0842 -8.3384 21 1 -4.1217 3.0733 -9.2409 22 1 -5.7750 1.3052 -9.0972 23 1 -5.4271 2.7956 -7.2162 24 7 2.0208 -0.6956 -1.1916 25 1 -0.3633 -0.9218 -0.4543 26 1 -0.3633 0.0675 1.0254 27 1 -0.3633 0.8543 -0.5712 28 1 1.8366 -0.1288 2.1308 29 1 1.5483 -1.6943 1.3343 30 1 4.0396 0.0002 0.8650 31 1 3.9530 -1.3101 2.0678 32 1 3.5274 -2.9598 0.3533 33 1 4.8990 -1.9764 -0.2215 34 1 2.2288 -1.5933 -4.3006 35 1 0.0289 -0.8601 -4.5758 36 1 -2.0125 0.9732 -3.9062 37 1 -0.7585 1.8409 -4.8242 38 1 -0.9617 0.1885 -6.6623 39 1 -2.2156 -0.6787 -5.7437 40 1 -3.6292 -0.3981 -9.1327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593121704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:40 Heat of formation + Delta-G solvation = 5.201447 kcal Electronic energy + Delta-G solvation = -21417.511834 eV Core-core repulsion = 18232.411795 eV Total energy + Delta-G solvation = -3185.100039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.52386 -38.97302 -37.27177 -35.01175 -33.77977 -32.90009 -30.81422 -30.37577 -28.82606 -27.18617 -24.90962 -23.05198 -22.95449 -22.02813 -21.03858 -20.05289 -19.09288 -17.66700 -16.54535 -16.08555 -15.61923 -15.23462 -15.10642 -14.87542 -14.70647 -14.45189 -14.29900 -13.60990 -13.45102 -13.27102 -12.99730 -12.37498 -12.32261 -12.26813 -11.76509 -11.47944 -11.44864 -11.23991 -11.07999 -10.87517 -10.66722 -10.33422 -10.32347 -9.76669 -9.68459 -9.52861 -9.25707 -8.62396 -8.44794 -8.29579 -6.10535 -4.13700 1.43520 2.46680 2.85180 3.28710 3.34955 3.38436 3.47920 3.66109 4.03511 4.21284 4.32381 4.36595 4.41177 4.86050 4.92038 4.99633 5.02081 5.20015 5.26577 5.30586 5.34456 5.39856 5.43519 5.55727 5.63614 5.71087 5.88124 6.11742 6.25865 6.30238 6.32686 6.56605 6.69026 6.87459 7.04315 7.49514 7.59179 7.85522 7.88440 7.97282 8.25037 8.53774 8.92063 9.51194 11.01011 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038478 B = 0.003382 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.515233 B = 8278.264392 C = 8826.493010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.135 3.865 3 H 0.095 0.905 4 C -0.132 4.132 5 C -0.128 4.128 6 C -0.034 4.034 7 C 0.219 3.781 8 N -0.492 5.492 9 C 0.028 3.972 10 C -0.071 4.071 11 C 0.583 3.417 12 O -0.548 6.548 13 N -0.706 5.706 14 C 0.124 3.876 15 C 0.012 3.988 16 C -0.523 4.523 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.897 3.103 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 N -0.418 5.418 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.180 0.820 35 H 0.401 0.599 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.691 -3.616 18.986 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.033 3.967 3 H 0.113 0.887 4 C -0.170 4.170 5 C -0.166 4.166 6 C -0.072 4.072 7 C -0.043 4.043 8 N -0.211 5.211 9 C -0.125 4.125 10 C -0.189 4.189 11 C 0.369 3.631 12 O -0.428 6.428 13 N -0.355 5.355 14 C 0.002 3.998 15 C -0.025 4.025 16 C -0.561 4.561 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.724 3.276 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.197 1.197 24 N -0.099 5.099 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.127 0.873 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.197 0.803 35 H 0.235 0.765 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.882 -3.464 19.166 23.352 hybrid contribution -1.231 0.722 -0.626 1.558 sum 11.651 -2.743 18.540 22.068 Atomic orbital electron populations 1.22576 0.92216 1.05586 1.03324 1.21646 0.96728 0.96339 0.81956 0.88704 1.22061 0.96225 1.01884 0.96831 1.21697 0.95912 0.99849 0.99114 1.20222 0.99305 0.99660 0.88053 1.23398 0.91776 0.93389 0.95779 1.69905 1.25199 1.26261 0.99727 1.22728 0.94223 0.95748 0.99838 1.20834 1.04402 1.08151 0.85475 1.16797 0.80670 0.83993 0.81623 1.90624 1.66966 1.29605 1.55620 1.46073 1.39963 1.26068 1.23365 1.21796 0.88427 0.92108 0.97423 1.19335 0.96314 0.97055 0.89843 1.21027 1.20811 1.06798 1.07502 0.92242 1.24996 0.97159 0.95362 0.96741 1.69953 1.42360 1.23852 1.16980 0.86512 0.81251 0.80692 0.79097 1.20545 1.21161 1.19742 1.45355 1.25247 1.32203 1.07143 0.92421 0.91351 0.87259 0.89163 0.90533 0.91051 0.89797 0.89097 0.88475 0.80296 0.76470 0.92274 0.92318 0.95761 0.95817 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 8.17 37.16 0.30 -1.89 16 2 C 0.14 1.51 3.27 -67.82 -0.22 1.29 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 4 C -0.13 -0.97 5.12 -26.51 -0.14 -1.11 16 5 C -0.13 -0.81 5.95 -26.53 -0.16 -0.97 16 6 C -0.03 -0.28 6.33 -27.56 -0.17 -0.45 16 7 C 0.22 2.81 7.64 -155.32 -1.19 1.62 16 8 N -0.49 -7.35 11.20 -10.35 -0.12 -7.46 16 9 C 0.03 0.42 11.39 -17.35 -0.20 0.22 16 10 C -0.07 -1.11 6.53 -82.35 -0.54 -1.65 16 11 C 0.58 10.20 7.13 -12.81 -0.09 10.10 16 12 O -0.55 -10.65 13.06 5.20 0.07 -10.58 16 13 N -0.71 -12.39 5.52 -61.59 -0.34 -12.73 16 14 C 0.12 2.58 5.62 -4.04 -0.02 2.56 16 15 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 16 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 20 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 N -0.42 -5.67 2.96 -102.72 -0.30 -5.98 16 25 H 0.06 0.78 7.98 -51.93 -0.41 0.36 16 26 H 0.07 0.65 7.90 -51.93 -0.41 0.23 16 27 H 0.11 1.66 5.03 -51.93 -0.26 1.40 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.18 2.25 7.91 -52.49 -0.42 1.83 16 35 H 0.40 6.27 7.92 -40.82 -0.32 5.94 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -32.13 325.97 -9.05 -41.18 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.01 Total: 2.87 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.97 Total: -3.20 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.02 Total: -51.39 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.13 -9.05 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593121704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.379 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds