Wall clock time and date at job start Mon Mar 30 2020 02:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.58306 * 2 1 4 4 C 1.53273 * 109.68697 * 120.33589 * 2 1 3 5 5 C 1.53156 * 109.43417 * 170.09765 * 4 2 1 6 6 C 1.53238 * 109.35802 * 290.79932 * 5 4 2 7 7 C 1.51117 * 108.32088 * 48.53093 * 6 5 4 8 8 N 1.30548 * 127.09671 * 164.09399 * 7 6 5 9 9 C 1.33463 * 109.68618 * 180.33122 * 8 7 6 10 10 C 1.36836 * 107.83202 * 359.97438 * 9 8 7 11 11 C 1.46766 * 126.91011 * 179.97438 * 10 9 8 12 12 O 1.21683 * 119.99914 * 201.81827 * 11 10 9 13 13 N 1.34776 * 119.99841 * 21.81073 * 11 10 9 14 14 C 1.46504 * 119.99703 * 185.62336 * 13 11 10 15 15 C 1.53001 * 109.47005 * 180.02562 * 14 13 11 16 16 C 1.50693 * 109.46973 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00463 * 359.97438 * 16 15 14 18 18 C 1.37886 * 119.99987 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99601 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47151 * 89.99522 * 20 18 16 22 22 H 1.48499 * 109.46967 * 209.99603 * 20 18 16 23 23 H 1.48505 * 109.47033 * 329.99483 * 20 18 16 24 24 N 1.34874 * 123.91174 * 344.40617 * 7 6 5 25 25 H 1.09001 * 109.47117 * 153.76562 * 1 2 3 26 26 H 1.08994 * 109.46846 * 273.76625 * 1 2 3 27 27 H 1.09001 * 109.46846 * 33.76579 * 1 2 3 28 28 H 1.08992 * 109.47401 * 290.08489 * 4 2 1 29 29 H 1.08999 * 109.47581 * 50.10857 * 4 2 1 30 30 H 1.08999 * 109.51456 * 50.58063 * 5 4 2 31 31 H 1.08999 * 109.51386 * 170.72876 * 5 4 2 32 32 H 1.09001 * 109.56820 * 288.88910 * 6 5 4 33 33 H 1.09002 * 109.78309 * 168.30504 * 6 5 4 34 34 H 1.07998 * 126.08265 * 179.97438 * 9 8 7 35 35 H 0.96999 * 119.99887 * 5.63687 * 13 11 10 36 36 H 1.08996 * 109.47000 * 300.00728 * 14 13 11 37 37 H 1.09002 * 109.46832 * 60.00343 * 14 13 11 38 38 H 1.09008 * 109.46977 * 300.00016 * 15 14 13 39 39 H 1.08992 * 109.46951 * 60.00119 * 15 14 13 40 40 H 0.97005 * 119.99978 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7289 1.2455 5 6 3.5577 -0.9435 1.1205 6 6 3.8354 -1.9698 0.0170 7 6 3.0411 -1.5776 -1.2073 8 7 3.2119 -2.0079 -2.4279 9 6 2.3229 -1.4286 -3.2374 10 6 1.5519 -0.5889 -2.4806 11 6 0.4472 0.2559 -2.9497 12 8 0.1049 1.2261 -2.3000 13 7 -0.1881 -0.0430 -4.1001 14 6 -1.2065 0.8660 -4.6320 15 6 -1.7677 0.2960 -5.9363 16 6 -2.8147 1.2314 -6.4837 17 1 -3.0562 2.1411 -5.9542 18 6 -3.4654 0.9252 -7.6602 19 7 -3.1717 -0.1829 -8.3048 20 14 -4.7638 2.0842 -8.3384 21 1 -4.1217 3.0733 -9.2409 22 1 -5.7750 1.3052 -9.0972 23 1 -5.4271 2.7956 -7.2162 24 7 2.0208 -0.6956 -1.1916 25 1 -0.3633 -0.9218 -0.4543 26 1 -0.3633 0.0675 1.0254 27 1 -0.3633 0.8543 -0.5712 28 1 1.8366 -0.1288 2.1308 29 1 1.5483 -1.6943 1.3343 30 1 4.0396 0.0002 0.8650 31 1 3.9530 -1.3101 2.0678 32 1 3.5274 -2.9598 0.3533 33 1 4.8990 -1.9764 -0.2215 34 1 2.2288 -1.5933 -4.3006 35 1 0.0289 -0.8601 -4.5758 36 1 -2.0125 0.9732 -3.9062 37 1 -0.7585 1.8409 -4.8242 38 1 -0.9617 0.1885 -6.6623 39 1 -2.2156 -0.6787 -5.7437 40 1 -3.6292 -0.3981 -9.1327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593121704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:39 Heat of formation + Delta-G solvation = -15.156429 kcal Electronic energy + Delta-G solvation = -21418.394618 eV Core-core repulsion = 18232.411795 eV Total energy + Delta-G solvation = -3185.982823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.56854 -40.41211 -38.09152 -36.66114 -34.87700 -34.62434 -32.03043 -31.77611 -30.12642 -28.10343 -26.70208 -24.21774 -23.94307 -22.97095 -22.80753 -21.28410 -20.00496 -18.90240 -18.49986 -17.35563 -16.74306 -16.58477 -16.54698 -16.36403 -15.64759 -15.55182 -15.38729 -14.79101 -14.79054 -14.35645 -14.28896 -13.93149 -13.32333 -13.30079 -13.21541 -12.91292 -12.63275 -12.53673 -12.24846 -12.07195 -12.01772 -11.71644 -11.65988 -11.52329 -11.32392 -10.85533 -10.73489 -10.60441 -10.06636 -9.48319 -8.24103 -6.34724 0.26439 1.40104 1.42500 1.43549 1.54052 1.74291 2.19488 2.28291 2.45557 3.10885 3.23505 3.48634 3.57594 3.64284 3.80897 4.04276 4.15137 4.28442 4.32759 4.44005 4.45878 4.47307 4.58178 4.70647 4.82718 4.86395 4.90547 4.95028 5.04177 5.08172 5.18675 5.27699 5.36703 5.46207 5.51378 5.57056 5.78202 6.08387 6.14652 6.47973 6.78452 6.85529 7.13319 7.34608 8.87827 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038478 B = 0.003382 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.515233 B = 8278.264392 C = 8826.493010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.127 3.873 3 H 0.089 0.911 4 C -0.125 4.125 5 C -0.121 4.121 6 C -0.036 4.036 7 C 0.228 3.772 8 N -0.520 5.520 9 C 0.031 3.969 10 C -0.100 4.100 11 C 0.586 3.414 12 O -0.570 6.570 13 N -0.703 5.703 14 C 0.146 3.854 15 C 0.022 3.978 16 C -0.546 4.546 17 H 0.061 0.939 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.265 1.265 24 N -0.422 5.422 25 H 0.038 0.962 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.192 0.808 35 H 0.410 0.590 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.010 0.990 39 H 0.008 0.992 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.525 -3.710 20.981 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.026 3.974 3 H 0.107 0.893 4 C -0.162 4.162 5 C -0.159 4.159 6 C -0.074 4.074 7 C -0.035 4.035 8 N -0.239 5.239 9 C -0.123 4.123 10 C -0.217 4.217 11 C 0.374 3.626 12 O -0.452 6.452 13 N -0.353 5.353 14 C 0.023 3.977 15 C -0.016 4.016 16 C -0.585 4.585 17 H 0.079 0.921 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.189 1.189 24 N -0.103 5.103 25 H 0.057 0.943 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.135 0.865 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.209 0.791 35 H 0.246 0.754 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.028 0.972 39 H 0.026 0.974 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.728 -3.562 21.180 25.490 hybrid contribution -1.430 0.709 -1.196 1.995 sum 12.298 -2.853 19.984 23.638 Atomic orbital electron populations 1.22447 0.93313 1.02911 1.04304 1.21903 0.95929 0.96692 0.82870 0.89342 1.22096 0.96887 1.01903 0.95360 1.21718 0.95042 0.99229 0.99885 1.20552 0.99270 1.01085 0.86541 1.24412 0.90861 0.91577 0.96602 1.69955 1.25847 1.27331 1.00798 1.23029 0.93730 0.94982 1.00589 1.20551 1.04781 1.09329 0.87044 1.16994 0.80748 0.83897 0.80954 1.90631 1.67753 1.30646 1.56122 1.45840 1.39612 1.26060 1.23812 1.21293 0.88820 0.92062 0.95553 1.19141 0.95343 0.96008 0.91065 1.21453 1.21641 1.07351 1.08009 0.92102 1.25880 0.99326 0.96962 0.97046 1.70062 1.43570 1.25503 1.17467 0.85440 0.78475 0.78604 0.78505 1.19773 1.20617 1.18949 1.45588 1.25332 1.32391 1.06990 0.94276 0.88421 0.90591 0.86533 0.90241 0.91432 0.86356 0.87302 0.87185 0.79089 0.75395 0.93047 0.92944 0.97165 0.97391 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.17 71.98 0.59 -3.57 16 2 C 0.13 2.69 3.27 45.09 0.15 2.84 16 3 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.12 -1.43 5.12 30.74 0.16 -1.27 16 5 C -0.12 -1.07 5.95 30.73 0.18 -0.89 16 6 C -0.04 -0.47 6.33 30.06 0.19 -0.28 16 7 C 0.23 5.51 7.64 138.30 1.06 6.57 16 8 N -0.52 -15.12 11.20 -186.66 -2.09 -17.21 16 9 C 0.03 0.91 11.39 84.12 0.96 1.87 16 10 C -0.10 -3.15 6.53 40.14 0.26 -2.89 16 11 C 0.59 21.13 7.13 86.47 0.62 21.75 16 12 O -0.57 -22.91 13.06 -4.30 -0.06 -22.97 16 13 N -0.70 -25.54 5.52 -466.99 -2.58 -28.12 16 14 C 0.15 6.25 5.62 86.38 0.49 6.73 16 15 C 0.02 1.11 5.09 29.85 0.15 1.26 16 16 C -0.55 -30.40 9.11 25.60 0.23 -30.17 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 18 C 0.01 0.38 5.46 84.66 0.46 0.84 16 19 N -0.93 -54.53 13.29 21.45 0.28 -54.24 16 20 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 N -0.42 -11.18 2.96 -478.89 -1.42 -12.60 16 25 H 0.04 1.06 7.98 -2.39 -0.02 1.05 16 26 H 0.10 1.69 7.90 -2.39 -0.02 1.67 16 27 H 0.08 2.39 5.03 -2.39 -0.01 2.37 16 28 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.91 8.10 -2.39 -0.02 0.89 16 30 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 31 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.19 4.86 7.91 -2.91 -0.02 4.83 16 35 H 0.41 13.29 7.92 -92.71 -0.73 12.55 16 36 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 Total: -1.00 -70.44 325.97 1.97 -68.47 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.31 Total: 18.29 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 5.49 Total: 2.78 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -5.80 Total: -112.17 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.06 Total: -22.97 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.44 1.97 -68.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593121704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.312 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds