Wall clock time and date at job start Mon Mar 30 2020 02:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.57855 * 2 1 4 4 C 1.53261 * 109.57878 * 239.59759 * 2 1 3 5 5 C 1.53022 * 109.49834 * 190.02373 * 4 2 1 6 6 C 1.53378 * 109.28280 * 69.24493 * 5 4 2 7 7 C 1.51117 * 108.25097 * 311.22530 * 6 5 4 8 8 N 1.30559 * 127.09130 * 196.00092 * 7 6 5 9 9 C 1.33457 * 109.68317 * 179.97438 * 8 7 6 10 10 C 1.36830 * 107.83434 * 0.02562 * 9 8 7 11 11 C 1.46772 * 126.91046 * 179.97438 * 10 9 8 12 12 O 1.21678 * 119.99496 * 157.89965 * 11 10 9 13 13 N 1.34775 * 119.99850 * 337.89854 * 11 10 9 14 14 C 1.46500 * 119.99682 * 185.00276 * 13 11 10 15 15 C 1.53002 * 109.46826 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47069 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99802 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00150 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00032 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47111 * 89.99917 * 20 18 16 22 22 H 1.48497 * 109.47087 * 209.99857 * 20 18 16 23 23 H 1.48505 * 109.47174 * 329.99807 * 20 18 16 24 24 N 1.34875 * 123.91679 * 15.99294 * 7 6 5 25 25 H 1.09004 * 109.47213 * 324.46682 * 1 2 3 26 26 H 1.08998 * 109.46964 * 204.46783 * 1 2 3 27 27 H 1.08995 * 109.46906 * 84.46494 * 1 2 3 28 28 H 1.08994 * 109.47404 * 309.95746 * 4 2 1 29 29 H 1.09004 * 109.47540 * 69.97830 * 4 2 1 30 30 H 1.09002 * 109.43333 * 309.33647 * 5 4 2 31 31 H 1.08997 * 109.57231 * 189.24296 * 5 4 2 32 32 H 1.08997 * 109.70618 * 191.53219 * 6 5 4 33 33 H 1.09005 * 109.70530 * 70.91050 * 6 5 4 34 34 H 1.07995 * 126.07852 * 179.97438 * 9 8 7 35 35 H 0.96999 * 120.00239 * 5.00587 * 13 11 10 36 36 H 1.08998 * 109.47131 * 299.99914 * 14 13 11 37 37 H 1.09001 * 109.47285 * 60.00093 * 14 13 11 38 38 H 1.08998 * 109.47017 * 299.99765 * 15 14 13 39 39 H 1.08994 * 109.47188 * 60.00237 * 15 14 13 40 40 H 0.97000 * 119.99580 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7308 -1.2454 5 6 3.5531 -0.9500 -1.1229 6 6 3.8276 -1.9788 -0.0190 7 6 3.0395 -1.5791 1.2070 8 7 3.2117 -2.0080 2.4280 9 6 2.3245 -1.4265 3.2379 10 6 1.5534 -0.5870 2.4811 11 6 0.4495 0.2588 2.9504 12 8 0.1108 1.2316 2.3027 13 7 -0.1887 -0.0420 4.0987 14 6 -1.3595 0.7360 4.5114 15 6 -1.8899 0.1932 5.8399 16 6 -3.0947 0.9930 6.2642 17 1 -3.4465 1.8073 5.6481 18 6 -3.7471 0.6859 7.4394 19 7 -3.3183 -0.3054 8.1898 20 14 -5.2399 1.6778 7.9656 21 1 -6.4687 1.0549 7.4110 22 1 -5.3220 1.6999 9.4481 23 1 -5.1159 3.0672 7.4560 24 7 2.0208 -0.6953 1.1917 25 1 -0.3634 0.8363 0.5973 26 1 -0.3633 -0.9354 0.4256 27 1 -0.3633 0.0991 -1.0228 28 1 1.5436 -1.6953 -1.3328 29 1 1.8339 -0.1309 -2.1311 30 1 4.0372 -0.0067 -0.8699 31 1 3.9466 -1.3186 -2.0701 32 1 4.8918 -1.9908 0.2159 33 1 3.5129 -2.9679 -0.3519 34 1 2.2313 -1.5903 4.3013 35 1 0.1271 -0.7735 4.6519 36 1 -1.0764 1.7814 4.6336 37 1 -2.1355 0.6563 3.7501 38 1 -2.1730 -0.8524 5.7182 39 1 -1.1138 0.2733 6.6010 40 1 -3.7776 -0.5216 9.0164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593121705.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:43 Heat of formation + Delta-G solvation = 5.554747 kcal Electronic energy + Delta-G solvation = -21428.237263 eV Core-core repulsion = 18243.152545 eV Total energy + Delta-G solvation = -3185.084719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.52482 -38.98405 -37.27466 -35.01716 -33.77383 -32.90339 -30.81445 -30.38319 -28.82710 -27.17765 -24.91323 -23.05434 -22.95379 -22.03240 -21.04422 -20.04777 -19.09585 -17.67206 -16.54738 -16.09640 -15.60543 -15.27933 -15.10462 -14.87522 -14.70225 -14.44951 -14.30102 -13.61220 -13.45901 -13.23248 -13.01247 -12.36888 -12.32080 -12.27156 -11.76610 -11.47307 -11.44909 -11.24141 -11.09314 -10.88808 -10.66347 -10.36142 -10.29821 -9.76759 -9.68468 -9.52822 -9.25775 -8.62725 -8.44979 -8.28951 -6.10681 -4.13923 1.43660 2.45724 2.85382 3.28468 3.34786 3.38299 3.46565 3.67060 4.03801 4.21612 4.32211 4.36845 4.40994 4.85897 4.92214 4.99307 5.02598 5.19763 5.26410 5.30530 5.34675 5.39740 5.43868 5.56010 5.63902 5.71449 5.88479 6.11989 6.26693 6.29195 6.32346 6.56120 6.68665 6.87586 7.04256 7.49245 7.58922 7.85163 7.88130 7.97007 8.24706 8.53115 8.91815 9.51030 11.00859 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037687 B = 0.003404 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.773753 B = 8222.637290 C = 8780.735051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 H 0.095 0.905 4 C -0.133 4.133 5 C -0.128 4.128 6 C -0.033 4.033 7 C 0.218 3.782 8 N -0.492 5.492 9 C 0.027 3.973 10 C -0.071 4.071 11 C 0.584 3.416 12 O -0.547 6.547 13 N -0.706 5.706 14 C 0.124 3.876 15 C 0.012 3.988 16 C -0.523 4.523 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 N -0.417 5.417 25 H 0.111 0.889 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.180 0.820 35 H 0.401 0.599 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.023 0.977 39 H 0.024 0.976 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.167 -3.195 -18.587 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.034 3.966 3 H 0.113 0.887 4 C -0.170 4.170 5 C -0.166 4.166 6 C -0.072 4.072 7 C -0.044 4.044 8 N -0.211 5.211 9 C -0.126 4.126 10 C -0.188 4.188 11 C 0.369 3.631 12 O -0.428 6.428 13 N -0.354 5.354 14 C 0.003 3.997 15 C -0.026 4.026 16 C -0.561 4.561 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.197 1.197 24 N -0.099 5.099 25 H 0.129 0.871 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.197 0.803 35 H 0.235 0.765 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.349 -3.052 -18.773 23.237 hybrid contribution -1.306 0.654 0.564 1.566 sum 12.042 -2.398 -18.209 21.962 Atomic orbital electron populations 1.22614 0.92242 1.05544 1.03585 1.21642 0.96752 0.96316 0.81937 0.88688 1.22036 0.96265 1.01876 0.96845 1.21698 0.95936 0.99806 0.99124 1.20248 0.99393 0.99579 0.88010 1.23401 0.91779 0.93412 0.95769 1.69904 1.25214 1.26231 0.99718 1.22712 0.94267 0.95850 0.99820 1.20817 1.04413 1.08059 0.85507 1.16797 0.80633 0.83851 0.81780 1.90613 1.67301 1.28491 1.56370 1.46069 1.31127 1.36177 1.22076 1.21796 0.84185 0.94814 0.98952 1.19338 0.96467 0.97087 0.89667 1.21025 1.12174 1.16418 1.06515 0.92243 1.24994 0.97642 0.95242 0.96381 1.69956 1.40578 1.28756 1.13855 0.86513 0.82808 0.80537 0.77695 1.20569 1.21145 1.19728 1.45342 1.25265 1.32179 1.07115 0.87110 0.92437 0.91308 0.90541 0.89166 0.91041 0.89807 0.88486 0.89072 0.80335 0.76481 0.92188 0.92400 0.95820 0.95739 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 8.20 37.16 0.30 -1.94 16 2 C 0.14 1.52 3.27 -67.83 -0.22 1.30 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.13 -0.98 5.12 -26.58 -0.14 -1.12 16 5 C -0.13 -0.82 5.95 -26.52 -0.16 -0.98 16 6 C -0.03 -0.28 6.33 -27.48 -0.17 -0.45 16 7 C 0.22 2.81 7.64 -155.31 -1.19 1.63 16 8 N -0.49 -7.34 11.20 -10.35 -0.12 -7.46 16 9 C 0.03 0.40 11.38 -17.36 -0.20 0.20 16 10 C -0.07 -1.10 6.57 -82.35 -0.54 -1.64 16 11 C 0.58 10.20 7.13 -12.81 -0.09 10.11 16 12 O -0.55 -10.63 13.07 5.21 0.07 -10.57 16 13 N -0.71 -12.39 5.54 -61.59 -0.34 -12.74 16 14 C 0.12 2.58 5.62 -4.04 -0.02 2.56 16 15 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 16 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 20 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 N -0.42 -5.68 2.97 -102.72 -0.30 -5.99 16 25 H 0.11 1.70 4.91 -51.93 -0.25 1.45 16 26 H 0.06 0.78 8.04 -51.93 -0.42 0.36 16 27 H 0.07 0.66 7.93 -51.93 -0.41 0.25 16 28 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.18 2.21 7.78 -52.49 -0.41 1.80 16 35 H 0.40 6.25 7.76 -40.82 -0.32 5.94 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -32.14 325.74 -9.04 -41.18 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.00 Total: 2.92 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.98 Total: -3.26 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.03 Total: -51.39 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.14 -9.04 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593121705.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.738 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds