Wall clock time and date at job start Mon Mar 30 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.57855 * 2 1 4 4 C 1.53261 * 109.57878 * 239.59759 * 2 1 3 5 5 C 1.53022 * 109.49834 * 190.02373 * 4 2 1 6 6 C 1.53378 * 109.28280 * 69.24493 * 5 4 2 7 7 C 1.51117 * 108.25097 * 311.22530 * 6 5 4 8 8 N 1.30559 * 127.09130 * 196.00092 * 7 6 5 9 9 C 1.33457 * 109.68317 * 179.97438 * 8 7 6 10 10 C 1.36830 * 107.83434 * 0.02562 * 9 8 7 11 11 C 1.46772 * 126.91046 * 179.97438 * 10 9 8 12 12 O 1.21678 * 119.99496 * 157.89965 * 11 10 9 13 13 N 1.34775 * 119.99850 * 337.89854 * 11 10 9 14 14 C 1.46500 * 119.99682 * 185.00276 * 13 11 10 15 15 C 1.53002 * 109.46826 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47069 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99802 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00150 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00032 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47111 * 89.99917 * 20 18 16 22 22 H 1.48497 * 109.47087 * 209.99857 * 20 18 16 23 23 H 1.48505 * 109.47174 * 329.99807 * 20 18 16 24 24 N 1.34875 * 123.91679 * 15.99294 * 7 6 5 25 25 H 1.09004 * 109.47213 * 324.46682 * 1 2 3 26 26 H 1.08998 * 109.46964 * 204.46783 * 1 2 3 27 27 H 1.08995 * 109.46906 * 84.46494 * 1 2 3 28 28 H 1.08994 * 109.47404 * 309.95746 * 4 2 1 29 29 H 1.09004 * 109.47540 * 69.97830 * 4 2 1 30 30 H 1.09002 * 109.43333 * 309.33647 * 5 4 2 31 31 H 1.08997 * 109.57231 * 189.24296 * 5 4 2 32 32 H 1.08997 * 109.70618 * 191.53219 * 6 5 4 33 33 H 1.09005 * 109.70530 * 70.91050 * 6 5 4 34 34 H 1.07995 * 126.07852 * 179.97438 * 9 8 7 35 35 H 0.96999 * 120.00239 * 5.00587 * 13 11 10 36 36 H 1.08998 * 109.47131 * 299.99914 * 14 13 11 37 37 H 1.09001 * 109.47285 * 60.00093 * 14 13 11 38 38 H 1.08998 * 109.47017 * 299.99765 * 15 14 13 39 39 H 1.08994 * 109.47188 * 60.00237 * 15 14 13 40 40 H 0.97000 * 119.99580 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7308 -1.2454 5 6 3.5531 -0.9500 -1.1229 6 6 3.8276 -1.9788 -0.0190 7 6 3.0395 -1.5791 1.2070 8 7 3.2117 -2.0080 2.4280 9 6 2.3245 -1.4265 3.2379 10 6 1.5534 -0.5870 2.4811 11 6 0.4495 0.2588 2.9504 12 8 0.1108 1.2316 2.3027 13 7 -0.1887 -0.0420 4.0987 14 6 -1.3595 0.7360 4.5114 15 6 -1.8899 0.1932 5.8399 16 6 -3.0947 0.9930 6.2642 17 1 -3.4465 1.8073 5.6481 18 6 -3.7471 0.6859 7.4394 19 7 -3.3183 -0.3054 8.1898 20 14 -5.2399 1.6778 7.9656 21 1 -6.4687 1.0549 7.4110 22 1 -5.3220 1.6999 9.4481 23 1 -5.1159 3.0672 7.4560 24 7 2.0208 -0.6953 1.1917 25 1 -0.3634 0.8363 0.5973 26 1 -0.3633 -0.9354 0.4256 27 1 -0.3633 0.0991 -1.0228 28 1 1.5436 -1.6953 -1.3328 29 1 1.8339 -0.1309 -2.1311 30 1 4.0372 -0.0067 -0.8699 31 1 3.9466 -1.3186 -2.0701 32 1 4.8918 -1.9908 0.2159 33 1 3.5129 -2.9679 -0.3519 34 1 2.2313 -1.5903 4.3013 35 1 0.1271 -0.7735 4.6519 36 1 -1.0764 1.7814 4.6336 37 1 -2.1355 0.6563 3.7501 38 1 -2.1730 -0.8524 5.7182 39 1 -1.1138 0.2733 6.6010 40 1 -3.7776 -0.5216 9.0164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593121705.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:42 Heat of formation + Delta-G solvation = -14.819953 kcal Electronic energy + Delta-G solvation = -21429.120777 eV Core-core repulsion = 18243.152545 eV Total energy + Delta-G solvation = -3185.968232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.56890 -40.42128 -38.09614 -36.66552 -34.87836 -34.61976 -32.03624 -31.77725 -30.12895 -28.09792 -26.70415 -24.21911 -23.94959 -22.97512 -22.80599 -21.28133 -20.00982 -18.90546 -18.49940 -17.37588 -16.70556 -16.61029 -16.58057 -16.35670 -15.65023 -15.55301 -15.39227 -14.83724 -14.71444 -14.36514 -14.28662 -13.93946 -13.31505 -13.30045 -13.22856 -12.91402 -12.64251 -12.53244 -12.26263 -12.06830 -12.01906 -11.71989 -11.65931 -11.52625 -11.32634 -10.84893 -10.73542 -10.60355 -10.06323 -9.47841 -8.24139 -6.34838 0.26709 1.38863 1.42416 1.43025 1.54095 1.75111 2.18965 2.28853 2.45581 3.10834 3.23520 3.48661 3.57210 3.64384 3.80416 4.04180 4.15240 4.28565 4.32488 4.43821 4.45534 4.47179 4.58290 4.70777 4.82376 4.86243 4.90523 4.94742 5.03971 5.07618 5.18972 5.27723 5.37046 5.46049 5.51742 5.56865 5.78113 6.08291 6.14452 6.47622 6.78332 6.85491 7.12871 7.34561 8.87790 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037687 B = 0.003404 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.773753 B = 8222.637290 C = 8780.735051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.128 3.872 3 H 0.089 0.911 4 C -0.125 4.125 5 C -0.121 4.121 6 C -0.036 4.036 7 C 0.228 3.772 8 N -0.520 5.520 9 C 0.030 3.970 10 C -0.100 4.100 11 C 0.587 3.413 12 O -0.569 6.569 13 N -0.704 5.704 14 C 0.146 3.854 15 C 0.022 3.978 16 C -0.546 4.546 17 H 0.061 0.939 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.265 1.265 24 N -0.421 5.421 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.193 0.807 35 H 0.410 0.590 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.901 -3.372 -20.647 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.026 3.974 3 H 0.107 0.893 4 C -0.163 4.163 5 C -0.159 4.159 6 C -0.074 4.074 7 C -0.035 4.035 8 N -0.239 5.239 9 C -0.124 4.124 10 C -0.217 4.217 11 C 0.374 3.626 12 O -0.451 6.451 13 N -0.353 5.353 14 C 0.023 3.977 15 C -0.016 4.016 16 C -0.584 4.584 17 H 0.079 0.921 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.190 1.190 24 N -0.103 5.103 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.135 0.865 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.210 0.790 35 H 0.246 0.754 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.027 0.973 39 H 0.028 0.972 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.094 -3.232 -20.851 25.375 hybrid contribution -1.468 0.673 1.159 1.988 sum 12.627 -2.559 -19.692 23.532 Atomic orbital electron populations 1.22483 0.93376 1.02912 1.04496 1.21896 0.95919 0.96692 0.82856 0.89288 1.22070 0.96953 1.01866 0.95386 1.21718 0.95038 0.99207 0.99894 1.20579 0.99401 1.00967 0.86496 1.24415 0.90852 0.91616 0.96608 1.69955 1.25872 1.27298 1.00782 1.23035 0.93731 0.95037 1.00624 1.20541 1.04849 1.09231 0.87067 1.16993 0.80747 0.83731 0.81095 1.90620 1.68126 1.29534 1.56825 1.45838 1.30530 1.36302 1.22670 1.21292 0.85092 0.94414 0.96919 1.19144 0.95446 0.96012 0.90970 1.21453 1.13222 1.16829 1.06940 0.92089 1.25880 1.00672 0.96273 0.96397 1.70066 1.42029 1.30187 1.14329 0.85440 0.79050 0.79181 0.77347 1.19754 1.20624 1.18953 1.45576 1.25358 1.32377 1.06967 0.90456 0.94269 0.88417 0.90301 0.86539 0.91386 0.86374 0.87166 0.87320 0.79006 0.75391 0.93016 0.92957 0.97326 0.97232 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.26 8.20 71.98 0.59 -3.67 16 2 C 0.13 2.71 3.27 45.09 0.15 2.86 16 3 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.13 -1.45 5.12 30.69 0.16 -1.29 16 5 C -0.12 -1.08 5.95 30.73 0.18 -0.89 16 6 C -0.04 -0.48 6.33 30.11 0.19 -0.28 16 7 C 0.23 5.51 7.64 138.30 1.06 6.57 16 8 N -0.52 -15.09 11.20 -186.67 -2.09 -17.18 16 9 C 0.03 0.88 11.38 84.12 0.96 1.84 16 10 C -0.10 -3.15 6.57 40.14 0.26 -2.88 16 11 C 0.59 21.13 7.13 86.47 0.62 21.75 16 12 O -0.57 -22.88 13.07 -4.28 -0.06 -22.94 16 13 N -0.70 -25.55 5.54 -467.00 -2.59 -28.13 16 14 C 0.15 6.25 5.62 86.38 0.49 6.73 16 15 C 0.02 1.10 5.09 29.85 0.15 1.25 16 16 C -0.55 -30.38 9.11 25.60 0.23 -30.14 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 18 C 0.01 0.37 5.46 84.65 0.46 0.83 16 19 N -0.93 -54.52 13.29 21.45 0.28 -54.24 16 20 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 N -0.42 -11.20 2.97 -478.91 -1.42 -12.63 16 25 H 0.08 2.45 4.91 -2.45 -0.01 2.44 16 26 H 0.04 1.07 8.04 -2.39 -0.02 1.05 16 27 H 0.10 1.72 7.93 -2.39 -0.02 1.70 16 28 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 29 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.69 8.12 -2.39 -0.02 0.68 16 31 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.19 4.80 7.78 -2.91 -0.02 4.77 16 35 H 0.41 13.25 7.76 -92.71 -0.72 12.53 16 36 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -70.46 325.74 1.97 -68.49 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.32 Total: 18.40 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 5.49 Total: 2.66 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -5.81 Total: -112.18 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.06 Total: -22.94 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -70.46 1.97 -68.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593121705.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.669 kcal (2) G-P(sol) polarization free energy of solvation -70.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds