Wall clock time and date at job start Mon Mar 30 2020 02:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.57913 * 2 1 4 4 C 1.53268 * 109.58240 * 120.26930 * 2 1 3 5 5 C 1.53150 * 109.44246 * 170.16930 * 4 2 1 6 6 C 1.53378 * 109.22790 * 290.66408 * 5 4 2 7 7 C 1.51116 * 108.24376 * 48.84571 * 6 5 4 8 8 N 1.30565 * 127.09262 * 163.93463 * 7 6 5 9 9 C 1.33451 * 109.68360 * 180.09963 * 8 7 6 10 10 C 1.36830 * 107.83985 * 359.97438 * 9 8 7 11 11 C 1.46764 * 126.91560 * 180.02562 * 10 9 8 12 12 O 1.21685 * 119.99899 * 190.44558 * 11 10 9 13 13 N 1.34776 * 119.99921 * 10.44525 * 11 10 9 14 14 C 1.46500 * 120.00013 * 7.38220 * 13 11 10 15 15 C 1.46500 * 119.99900 * 187.37330 * 13 11 10 16 16 C 1.50705 * 109.46568 * 90.00503 * 15 13 11 17 17 H 1.07996 * 120.00063 * 359.97438 * 16 15 13 18 18 C 1.37873 * 119.99904 * 180.02562 * 16 15 13 19 19 N 1.31520 * 120.00111 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00266 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47250 * 59.99612 * 20 18 16 22 22 H 1.48498 * 109.47372 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47093 * 299.99635 * 20 18 16 24 24 N 1.34871 * 123.92134 * 343.97395 * 7 6 5 25 25 H 1.09001 * 109.46782 * 264.29228 * 1 2 3 26 26 H 1.08995 * 109.47431 * 24.28904 * 1 2 3 27 27 H 1.08999 * 109.47526 * 144.29361 * 1 2 3 28 28 H 1.09004 * 109.47433 * 290.16035 * 4 2 1 29 29 H 1.09001 * 109.47344 * 50.16661 * 4 2 1 30 30 H 1.09003 * 109.51518 * 50.58548 * 5 4 2 31 31 H 1.09000 * 109.51652 * 170.73865 * 5 4 2 32 32 H 1.08999 * 109.71099 * 168.53600 * 6 5 4 33 33 H 1.09003 * 109.70999 * 289.16551 * 6 5 4 34 34 H 1.08000 * 126.07967 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47521 * 61.80835 * 14 13 11 36 36 H 1.08994 * 109.47093 * 181.81343 * 14 13 11 37 37 H 1.09002 * 109.46914 * 301.80558 * 14 13 11 38 38 H 1.08993 * 109.47155 * 210.00240 * 15 13 11 39 39 H 1.09001 * 109.47104 * 330.01112 * 15 13 11 40 40 H 0.96998 * 120.00134 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0437 -0.7279 1.2472 5 6 3.5552 -0.9425 1.1258 6 6 3.8322 -1.9734 0.0244 7 6 3.0440 -1.5779 -1.2028 8 7 3.2184 -2.0083 -2.4231 9 6 2.3314 -1.4294 -3.2349 10 6 1.5580 -0.5899 -2.4804 11 6 0.4536 0.2536 -2.9523 12 8 -0.0281 1.0938 -2.2155 13 7 -0.0271 0.0978 -4.2017 14 6 0.4386 -1.0157 -5.0321 15 6 -1.0154 1.0417 -4.7294 16 6 -0.3058 2.1806 -5.4155 17 1 0.7733 2.1995 -5.4541 18 6 -1.0343 3.1988 -5.9928 19 7 -2.3484 3.1760 -5.9454 20 14 -0.1548 4.6109 -6.8426 21 1 0.6685 4.0810 -7.9591 22 1 -1.1566 5.5677 -7.3776 23 1 0.7227 5.3062 -5.8670 24 7 2.0234 -0.6964 -1.1900 25 1 -0.3633 -0.1022 1.0226 26 1 -0.3634 0.9366 -0.4227 27 1 -0.3634 -0.8345 -0.5998 28 1 1.8318 -0.1271 2.1317 29 1 1.5453 -1.6932 1.3356 30 1 4.0377 0.0010 0.8708 31 1 3.9483 -1.3086 2.0742 32 1 4.8966 -1.9841 -0.2099 33 1 3.5190 -2.9623 0.3593 34 1 2.2402 -1.5942 -4.2984 35 1 0.1748 -1.9597 -4.5553 36 1 -0.0334 -0.9597 -6.0129 37 1 1.5211 -0.9561 -5.1459 38 1 -1.6595 0.5310 -5.4452 39 1 -1.6196 1.4310 -3.9100 40 1 -2.8609 3.8926 -6.3512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593418003.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:46 Heat of formation + Delta-G solvation = 41.514521 kcal Electronic energy + Delta-G solvation = -22320.757885 eV Core-core repulsion = 19137.232499 eV Total energy + Delta-G solvation = -3183.525386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.31784 -38.66134 -37.12053 -35.01946 -33.54152 -32.69513 -30.62847 -29.63268 -27.74553 -26.73185 -26.13466 -23.55662 -22.79033 -22.07166 -21.32211 -19.39600 -18.63349 -16.80805 -16.53559 -16.02305 -15.70458 -15.25556 -14.72452 -14.69439 -14.45361 -14.24873 -13.91864 -13.43881 -13.06414 -12.98502 -12.71702 -12.17813 -12.10151 -11.98264 -11.54873 -11.39503 -11.30712 -11.24501 -11.13491 -10.84580 -10.61731 -10.53547 -10.17625 -9.95642 -9.66717 -9.44406 -8.98870 -8.45820 -8.16120 -7.65919 -6.07093 -4.12450 1.71759 2.74003 3.09969 3.31204 3.35186 3.38595 3.88926 3.96303 4.22422 4.39635 4.42434 4.49692 4.54973 5.04514 5.09847 5.13580 5.22436 5.27592 5.29520 5.44482 5.49152 5.57723 5.60078 5.70311 5.76456 5.83398 5.87931 5.97671 6.11618 6.21515 6.37390 6.60194 6.82034 7.03135 7.29054 7.39691 7.51655 7.89264 8.15336 8.18788 8.32476 8.85538 9.02920 9.52923 11.00673 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025881 B = 0.004840 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.599866 B = 5783.250812 C = 6082.916565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 H 0.093 0.907 4 C -0.131 4.131 5 C -0.128 4.128 6 C -0.032 4.032 7 C 0.210 3.790 8 N -0.496 5.496 9 C -0.002 4.002 10 C -0.060 4.060 11 C 0.580 3.420 12 O -0.541 6.541 13 N -0.586 5.586 14 C 0.071 3.929 15 C 0.248 3.752 16 C -0.530 4.530 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 N -0.418 5.418 25 H 0.058 0.942 26 H 0.110 0.890 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.199 0.801 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.036 0.964 39 H 0.047 0.953 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.149 -10.655 12.363 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 H 0.111 0.889 4 C -0.169 4.169 5 C -0.166 4.166 6 C -0.071 4.071 7 C -0.052 4.052 8 N -0.215 5.215 9 C -0.154 4.154 10 C -0.178 4.178 11 C 0.367 3.633 12 O -0.421 6.421 13 N -0.317 5.317 14 C -0.072 4.072 15 C 0.129 3.871 16 C -0.569 4.569 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.202 1.202 24 N -0.100 5.100 25 H 0.077 0.923 26 H 0.129 0.871 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.215 0.785 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.192 -10.561 12.569 18.816 hybrid contribution -0.133 1.402 -0.467 1.484 sum 9.060 -9.159 12.103 17.676 Atomic orbital electron populations 1.22502 0.91829 1.06452 1.01471 1.21629 0.96975 0.96194 0.81883 0.88904 1.22071 0.96136 1.01760 0.96922 1.21722 0.96017 0.99821 0.99014 1.20206 0.99275 0.99404 0.88166 1.23345 0.92146 0.93850 0.95862 1.69932 1.25326 1.26562 0.99695 1.23889 0.94143 0.96710 1.00698 1.21062 1.04204 1.07565 0.84952 1.16695 0.81268 0.82850 0.82485 1.90626 1.60687 1.36763 1.54059 1.47830 1.43071 1.28542 1.12212 1.22229 0.99654 0.88934 0.96416 1.19390 0.86311 0.86638 0.94750 1.21411 0.93419 1.06434 1.35608 0.92417 1.24918 0.94828 0.98012 0.96178 1.69922 1.04965 1.33561 1.44859 0.86550 0.79266 0.81853 0.79716 1.20149 1.21139 1.20234 1.45363 1.25293 1.32120 1.07240 0.92266 0.87135 0.92532 0.89281 0.90665 0.91065 0.89989 0.88716 0.89322 0.78533 0.92899 0.90112 0.91596 0.94615 0.93505 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 7.98 37.16 0.30 -2.17 16 2 C 0.14 1.86 3.30 -67.82 -0.22 1.64 16 3 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.13 -1.22 5.04 -26.52 -0.13 -1.36 16 5 C -0.13 -1.05 5.96 -26.46 -0.16 -1.20 16 6 C -0.03 -0.31 6.33 -27.48 -0.17 -0.49 16 7 C 0.21 3.13 7.64 -155.31 -1.19 1.94 16 8 N -0.50 -8.34 11.20 -10.35 -0.12 -8.45 16 9 C 0.00 -0.04 10.15 -17.36 -0.18 -0.22 16 10 C -0.06 -1.12 6.32 -82.35 -0.52 -1.65 16 11 C 0.58 12.60 7.09 -12.82 -0.09 12.51 16 12 O -0.54 -13.03 11.96 5.20 0.06 -12.97 16 13 N -0.59 -12.67 2.86 -184.48 -0.53 -13.20 16 14 C 0.07 1.17 8.82 59.85 0.53 1.70 16 15 C 0.25 6.42 5.18 -5.19 -0.03 6.39 16 16 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 17 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 20 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 N -0.42 -6.79 2.94 -102.72 -0.30 -7.09 16 25 H 0.06 0.69 7.77 -51.93 -0.40 0.29 16 26 H 0.11 2.01 5.50 -51.93 -0.29 1.73 16 27 H 0.06 0.94 7.38 -51.93 -0.38 0.56 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.20 2.93 4.27 -52.49 -0.22 2.70 16 35 H 0.05 0.76 7.82 -51.93 -0.41 0.35 16 36 H 0.08 1.28 7.81 -51.93 -0.41 0.88 16 37 H 0.07 0.99 4.97 -51.93 -0.26 0.73 16 38 H 0.04 0.93 7.93 -51.93 -0.41 0.52 16 39 H 0.05 1.35 7.33 -51.93 -0.38 0.97 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 315.59 15.07 4.76 4.76 Total: -1.00 -33.33 315.59 -8.36 -41.69 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.66 Total: 0.51 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -2.29 Total: 3.54 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.21 Total: -54.28 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.06 Total: -12.97 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.33 -8.36 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593418003.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.201 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds