Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.57913 * 2 1 4 4 C 1.53268 * 109.58240 * 120.26930 * 2 1 3 5 5 C 1.53150 * 109.44246 * 170.16930 * 4 2 1 6 6 C 1.53378 * 109.22790 * 290.66408 * 5 4 2 7 7 C 1.51116 * 108.24376 * 48.84571 * 6 5 4 8 8 N 1.30565 * 127.09262 * 163.93463 * 7 6 5 9 9 C 1.33451 * 109.68360 * 180.09963 * 8 7 6 10 10 C 1.36830 * 107.83985 * 359.97438 * 9 8 7 11 11 C 1.46764 * 126.91560 * 180.02562 * 10 9 8 12 12 O 1.21685 * 119.99899 * 190.44558 * 11 10 9 13 13 N 1.34776 * 119.99921 * 10.44525 * 11 10 9 14 14 C 1.46500 * 120.00013 * 7.38220 * 13 11 10 15 15 C 1.46500 * 119.99900 * 187.37330 * 13 11 10 16 16 C 1.50705 * 109.46568 * 90.00503 * 15 13 11 17 17 H 1.07996 * 120.00063 * 359.97438 * 16 15 13 18 18 C 1.37873 * 119.99904 * 180.02562 * 16 15 13 19 19 N 1.31520 * 120.00111 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00266 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47250 * 59.99612 * 20 18 16 22 22 H 1.48498 * 109.47372 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47093 * 299.99635 * 20 18 16 24 24 N 1.34871 * 123.92134 * 343.97395 * 7 6 5 25 25 H 1.09001 * 109.46782 * 264.29228 * 1 2 3 26 26 H 1.08995 * 109.47431 * 24.28904 * 1 2 3 27 27 H 1.08999 * 109.47526 * 144.29361 * 1 2 3 28 28 H 1.09004 * 109.47433 * 290.16035 * 4 2 1 29 29 H 1.09001 * 109.47344 * 50.16661 * 4 2 1 30 30 H 1.09003 * 109.51518 * 50.58548 * 5 4 2 31 31 H 1.09000 * 109.51652 * 170.73865 * 5 4 2 32 32 H 1.08999 * 109.71099 * 168.53600 * 6 5 4 33 33 H 1.09003 * 109.70999 * 289.16551 * 6 5 4 34 34 H 1.08000 * 126.07967 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47521 * 61.80835 * 14 13 11 36 36 H 1.08994 * 109.47093 * 181.81343 * 14 13 11 37 37 H 1.09002 * 109.46914 * 301.80558 * 14 13 11 38 38 H 1.08993 * 109.47155 * 210.00240 * 15 13 11 39 39 H 1.09001 * 109.47104 * 330.01112 * 15 13 11 40 40 H 0.96998 * 120.00134 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0437 -0.7279 1.2472 5 6 3.5552 -0.9425 1.1258 6 6 3.8322 -1.9734 0.0244 7 6 3.0440 -1.5779 -1.2028 8 7 3.2184 -2.0083 -2.4231 9 6 2.3314 -1.4294 -3.2349 10 6 1.5580 -0.5899 -2.4804 11 6 0.4536 0.2536 -2.9523 12 8 -0.0281 1.0938 -2.2155 13 7 -0.0271 0.0978 -4.2017 14 6 0.4386 -1.0157 -5.0321 15 6 -1.0154 1.0417 -4.7294 16 6 -0.3058 2.1806 -5.4155 17 1 0.7733 2.1995 -5.4541 18 6 -1.0343 3.1988 -5.9928 19 7 -2.3484 3.1760 -5.9454 20 14 -0.1548 4.6109 -6.8426 21 1 0.6685 4.0810 -7.9591 22 1 -1.1566 5.5677 -7.3776 23 1 0.7227 5.3062 -5.8670 24 7 2.0234 -0.6964 -1.1900 25 1 -0.3633 -0.1022 1.0226 26 1 -0.3634 0.9366 -0.4227 27 1 -0.3634 -0.8345 -0.5998 28 1 1.8318 -0.1271 2.1317 29 1 1.5453 -1.6932 1.3356 30 1 4.0377 0.0010 0.8708 31 1 3.9483 -1.3086 2.0742 32 1 4.8966 -1.9841 -0.2099 33 1 3.5190 -2.9623 0.3593 34 1 2.2402 -1.5942 -4.2984 35 1 0.1748 -1.9597 -4.5553 36 1 -0.0334 -0.9597 -6.0129 37 1 1.5211 -0.9561 -5.1459 38 1 -1.6595 0.5310 -5.4452 39 1 -1.6196 1.4310 -3.9100 40 1 -2.8609 3.8926 -6.3512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593418003.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = 20.322396 kcal Electronic energy + Delta-G solvation = -22321.676845 eV Core-core repulsion = 19137.232499 eV Total energy + Delta-G solvation = -3184.444345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.55666 -40.32632 -38.16323 -36.68744 -34.80280 -34.57621 -31.82087 -31.14881 -29.27484 -27.93211 -27.72512 -25.32320 -23.92295 -23.23135 -22.70294 -20.71627 -19.84153 -18.69637 -18.22041 -17.50014 -16.98881 -16.90478 -16.31538 -15.92518 -15.70185 -15.40222 -15.14858 -14.60464 -14.46036 -14.32860 -14.07368 -13.80331 -13.51145 -13.26014 -13.19521 -13.04844 -12.64140 -12.58125 -12.33056 -12.09806 -12.03827 -11.98256 -11.74976 -11.59816 -11.30348 -10.68778 -10.66174 -10.61724 -9.54234 -9.36680 -8.24018 -6.39315 0.34599 1.36477 1.39735 1.46994 1.52067 1.82357 2.27728 2.39023 2.45295 3.05472 3.27015 3.47929 3.56480 3.66061 3.79049 4.00761 4.11103 4.24287 4.32702 4.39674 4.46440 4.57819 4.67662 4.70895 4.86121 4.87433 4.88958 4.95575 5.01409 5.05284 5.13312 5.23345 5.28659 5.32601 5.52067 5.56740 5.82504 6.02517 6.14531 6.60351 6.69542 6.89237 7.23992 7.38971 8.82618 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025881 B = 0.004840 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.599866 B = 5783.250812 C = 6082.916565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.079 0.921 4 C -0.122 4.122 5 C -0.121 4.121 6 C -0.034 4.034 7 C 0.224 3.776 8 N -0.518 5.518 9 C 0.011 3.989 10 C -0.098 4.098 11 C 0.572 3.428 12 O -0.579 6.579 13 N -0.595 5.595 14 C 0.069 3.931 15 C 0.264 3.736 16 C -0.547 4.547 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.279 1.279 24 N -0.425 5.425 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.214 0.786 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.030 0.970 39 H 0.004 0.996 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.595 -11.831 13.588 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.026 3.974 3 H 0.097 0.903 4 C -0.160 4.160 5 C -0.159 4.159 6 C -0.072 4.072 7 C -0.038 4.038 8 N -0.238 5.238 9 C -0.142 4.142 10 C -0.215 4.215 11 C 0.362 3.638 12 O -0.461 6.461 13 N -0.325 5.325 14 C -0.073 4.073 15 C 0.144 3.856 16 C -0.585 4.585 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.565 5.565 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.205 1.205 24 N -0.106 5.106 25 H 0.111 0.889 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.230 0.770 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.048 0.952 39 H 0.023 0.977 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.652 -11.769 13.790 21.551 hybrid contribution -0.888 1.707 -0.784 2.078 sum 10.764 -10.062 13.006 19.654 Atomic orbital electron populations 1.22315 0.93227 1.03118 1.02584 1.21854 0.95944 0.96372 0.83247 0.90316 1.22103 0.97040 1.01864 0.94973 1.21749 0.94881 0.99157 1.00109 1.20572 0.99350 1.00971 0.86347 1.24469 0.90839 0.91595 0.96924 1.70011 1.25707 1.27457 1.00579 1.24175 0.93195 0.95372 1.01459 1.20656 1.04735 1.09192 0.86873 1.17165 0.81691 0.82887 0.82089 1.90633 1.62015 1.38481 1.54995 1.47781 1.42617 1.29115 1.13022 1.22470 1.00716 0.88073 0.96036 1.18867 0.86797 0.87177 0.92802 1.21653 0.93221 1.07576 1.36061 0.93020 1.25802 0.95565 1.00593 0.96730 1.70036 1.06399 1.34548 1.45528 0.85489 0.78247 0.78445 0.78757 1.18520 1.20130 1.20515 1.45592 1.25587 1.32478 1.06949 0.88886 0.91188 0.94883 0.86667 0.89933 0.91766 0.86095 0.87139 0.87011 0.77006 0.90545 0.89729 0.89742 0.95177 0.97747 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 7.98 71.98 0.57 -4.20 16 2 C 0.13 3.45 3.30 45.09 0.15 3.59 16 3 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 4 C -0.12 -1.88 5.04 30.73 0.15 -1.72 16 5 C -0.12 -1.46 5.96 30.77 0.18 -1.28 16 6 C -0.03 -0.54 6.33 30.11 0.19 -0.34 16 7 C 0.22 6.20 7.64 138.30 1.06 7.26 16 8 N -0.52 -16.49 11.20 -186.67 -2.09 -18.58 16 9 C 0.01 0.36 10.15 84.12 0.85 1.21 16 10 C -0.10 -3.70 6.32 40.14 0.25 -3.45 16 11 C 0.57 26.14 7.09 86.47 0.61 26.76 16 12 O -0.58 -29.95 11.96 -4.30 -0.05 -30.00 16 13 N -0.60 -26.83 2.86 -855.80 -2.44 -29.27 16 14 C 0.07 2.25 8.82 127.77 1.13 3.38 16 15 C 0.26 14.44 5.18 85.63 0.44 14.88 16 16 C -0.55 -31.76 9.39 25.60 0.24 -31.52 16 17 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 18 C 0.01 0.72 5.46 84.65 0.46 1.19 16 19 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 20 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 21 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 24 N -0.42 -13.57 2.94 -478.91 -1.41 -14.98 16 25 H 0.09 2.11 7.77 -2.39 -0.02 2.10 16 26 H 0.07 2.76 5.50 -2.39 -0.01 2.74 16 27 H 0.03 1.14 7.38 -2.39 -0.02 1.12 16 28 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.08 1.20 8.10 -2.39 -0.02 1.18 16 30 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 31 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.21 6.04 4.27 -2.91 -0.01 6.03 16 35 H 0.08 2.14 7.82 -2.39 -0.02 2.12 16 36 H 0.08 2.69 7.81 -2.39 -0.02 2.67 16 37 H 0.08 2.46 4.97 -2.39 -0.01 2.44 16 38 H 0.03 1.65 7.93 -2.39 -0.02 1.63 16 39 H 0.00 0.27 7.33 -2.39 -0.02 0.26 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -76.51 315.59 3.66 -72.85 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.04 Total: 12.65 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 6.30 Total: 15.75 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -5.66 Total: -118.34 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.05 Total: -30.00 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -76.51 3.66 -72.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593418003.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.173 kcal (2) G-P(sol) polarization free energy of solvation -76.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds