Wall clock time and date at job start Mon Mar 30 2020 02:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47524 * 2 1 4 4 C 1.50699 * 109.47115 * 119.99968 * 2 1 3 5 5 H 1.08000 * 119.99664 * 119.99878 * 4 2 1 6 6 C 1.37870 * 120.00081 * 300.00246 * 4 2 1 7 7 N 1.31518 * 120.00126 * 180.02562 * 6 4 2 8 8 Si 1.86807 * 119.99957 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46987 * 90.00370 * 8 6 4 10 10 H 1.48498 * 109.47153 * 209.99782 * 8 6 4 11 11 H 1.48494 * 109.47068 * 330.00414 * 8 6 4 12 12 N 1.46496 * 109.47324 * 240.00233 * 2 1 3 13 13 C 1.34776 * 120.00291 * 84.99668 * 12 2 1 14 14 O 1.21676 * 119.99816 * 5.02695 * 13 12 2 15 15 C 1.46771 * 120.00339 * 185.02054 * 13 12 2 16 16 C 1.36828 * 126.90942 * 15.72981 * 15 13 12 17 17 N 1.33451 * 107.83510 * 179.97438 * 16 15 13 18 18 C 1.30560 * 109.68520 * 359.97438 * 17 16 15 19 19 N 1.35054 * 108.93028 * 359.95554 * 18 17 16 20 20 C 1.46447 * 124.85078 * 179.75850 * 19 18 17 21 21 H 1.08994 * 109.58733 * 102.99936 * 20 19 18 22 22 C 1.53002 * 109.57636 * 223.27148 * 20 19 18 23 23 C 1.53271 * 108.92345 * 343.13449 * 20 19 18 24 24 C 1.53154 * 109.44051 * 50.17154 * 23 20 19 25 25 C 1.51112 * 127.09370 * 180.02562 * 18 17 16 26 26 H 1.08997 * 109.47289 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47087 * 300.00197 * 1 2 3 28 28 H 1.09010 * 109.46808 * 60.00004 * 1 2 3 29 29 H 0.97000 * 119.99823 * 179.97438 * 7 6 4 30 30 H 0.97004 * 120.00239 * 265.00437 * 12 2 1 31 31 H 1.08000 * 126.08680 * 0.02650 * 16 15 13 32 32 H 1.09005 * 109.46626 * 147.47089 * 22 20 19 33 33 H 1.08996 * 109.46614 * 267.46448 * 22 20 19 34 34 H 1.08990 * 109.47556 * 27.46954 * 22 20 19 35 35 H 1.09000 * 109.47487 * 170.16671 * 23 20 19 36 36 H 1.09006 * 109.47540 * 290.17931 * 23 20 19 37 37 H 1.09000 * 109.51393 * 50.58746 * 24 23 20 38 38 H 1.09002 * 109.51095 * 170.73985 * 24 23 20 39 39 H 1.08991 * 109.70929 * 44.28246 * 25 18 17 40 40 H 1.09006 * 109.70628 * 283.65766 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6257 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9770 1.9953 3.9070 11 1 0.8490 2.1772 1.4922 12 7 2.0183 -0.6905 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.9456 1.1813 -2.3910 15 6 2.5302 -0.7328 -3.5805 16 6 2.5014 -2.0854 -3.7853 17 7 2.9272 -2.3198 -5.0281 18 6 3.2204 -1.1899 -5.6130 19 7 2.9876 -0.1769 -4.7507 20 6 3.2046 1.2408 -5.0470 21 1 2.2478 1.7227 -5.2476 22 6 3.8787 1.9171 -3.8515 23 6 4.1073 1.3584 -6.2800 24 6 3.5546 0.4753 -7.4026 25 6 3.7362 -0.9992 -7.0205 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.9039 -0.5274 4.4375 30 1 2.2490 -1.6317 -1.1527 31 1 2.1887 -2.8307 -3.0689 32 1 4.5354 2.7115 -4.2063 33 1 3.1172 2.3404 -3.1967 34 1 4.4639 1.1812 -3.3002 35 1 4.1339 2.3959 -6.6133 36 1 5.1158 1.0329 -6.0245 37 1 2.4948 0.6873 -7.5443 38 1 4.0945 0.6809 -8.3269 39 1 3.1713 -1.6291 -7.7075 40 1 4.7930 -1.2630 -7.0636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593436380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:55 Heat of formation + Delta-G solvation = 20.909641 kcal Electronic energy + Delta-G solvation = -22112.085612 eV Core-core repulsion = 18927.666732 eV Total energy + Delta-G solvation = -3184.418880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.40354 -38.81378 -37.17005 -35.15168 -33.65535 -32.47336 -30.70933 -30.51263 -28.70102 -26.99617 -25.22465 -23.36175 -22.93393 -21.98012 -20.90948 -19.58334 -19.05914 -17.89516 -16.52838 -15.94890 -15.53304 -15.41839 -14.83512 -14.81181 -14.70197 -14.25848 -13.88430 -13.49512 -13.24953 -13.02976 -12.87804 -12.35741 -12.24193 -12.19137 -11.88816 -11.64148 -11.39023 -11.35613 -11.31254 -10.86969 -10.67126 -10.20921 -10.16284 -9.71088 -9.57596 -9.29472 -9.21686 -8.77756 -8.37125 -8.10060 -6.22308 -4.25263 1.57480 2.60915 2.97231 3.21710 3.33722 3.37060 3.72582 3.90571 4.12768 4.29546 4.30569 4.41478 4.46213 4.96688 5.03219 5.11944 5.12306 5.15216 5.33165 5.40974 5.43001 5.49708 5.51171 5.67058 5.74343 5.80511 6.01529 6.24824 6.27748 6.35220 6.47323 6.52460 6.68124 6.81389 7.14706 7.17863 7.25855 7.47503 8.00901 8.13544 8.47206 8.73611 8.85704 9.37658 10.89836 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032381 B = 0.004570 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.485740 B = 6125.820318 C = 6566.664409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.239 3.761 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.685 5.685 13 C 0.580 3.420 14 O -0.554 6.554 15 C -0.064 4.064 16 C 0.024 3.976 17 N -0.493 5.493 18 C 0.214 3.786 19 N -0.418 5.418 20 C 0.136 3.864 21 H 0.093 0.907 22 C -0.173 4.173 23 C -0.132 4.132 24 C -0.127 4.127 25 C -0.032 4.032 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.268 0.732 30 H 0.398 0.602 31 H 0.179 0.821 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 3.061 -20.478 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.136 3.864 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.332 5.332 13 C 0.365 3.635 14 O -0.435 6.435 15 C -0.182 4.182 16 C -0.130 4.130 17 N -0.211 5.211 18 C -0.048 4.048 19 N -0.099 5.099 20 C 0.034 3.966 21 H 0.111 0.889 22 C -0.230 4.230 23 C -0.170 4.170 24 C -0.165 4.165 25 C -0.071 4.071 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.232 0.768 31 H 0.196 0.804 32 H 0.081 0.919 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.804 3.333 -20.627 21.082 hybrid contribution -0.628 0.943 0.788 1.380 sum 2.176 4.276 -19.839 20.411 Atomic orbital electron populations 1.22468 0.99131 1.01081 0.99311 1.19151 0.90137 0.94763 0.82348 0.93101 1.21018 1.33370 1.14539 0.88420 0.90055 1.24818 0.95468 0.96677 0.95487 1.69869 1.44790 1.40068 0.98053 0.86881 0.80572 0.83605 0.77437 1.20268 1.22141 1.18709 1.45932 1.64345 1.14054 1.08874 1.16819 0.78237 0.86281 0.82143 1.90607 1.52797 1.14043 1.86048 1.20902 1.13096 0.94131 0.90090 1.22692 1.03069 0.92646 0.94564 1.69877 1.18272 1.25506 1.07473 1.23411 1.03681 0.82592 0.95140 1.45354 1.46251 1.08029 1.10316 1.21630 1.00460 0.77901 0.96606 0.88867 1.22544 1.02250 1.00741 0.97476 1.22077 0.99532 1.01632 0.93759 1.21724 1.02341 0.93763 0.98708 1.20229 1.01905 0.97288 0.87710 0.92600 0.93311 0.94630 0.92248 0.76763 0.80395 0.91855 0.87228 0.92310 0.89233 0.90544 0.91074 0.89904 0.88605 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.96 37.16 0.33 -3.23 16 2 C 0.24 5.62 2.19 -69.09 -0.15 5.47 16 3 H 0.05 1.31 6.57 -51.93 -0.34 0.96 16 4 C -0.54 -14.33 9.31 -34.44 -0.32 -14.65 16 5 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 8 Si 0.89 21.48 24.37 -169.99 -4.14 17.33 16 9 H -0.28 -6.48 6.87 56.52 0.39 -6.10 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.26 -6.28 6.53 56.52 0.37 -5.92 16 12 N -0.68 -13.73 5.03 -56.22 -0.28 -14.02 16 13 C 0.58 11.25 7.16 -12.81 -0.09 11.16 16 14 O -0.55 -11.77 12.34 5.21 0.06 -11.71 16 15 C -0.06 -1.10 6.45 -82.44 -0.53 -1.63 16 16 C 0.02 0.38 11.37 -17.36 -0.20 0.18 16 17 N -0.49 -7.82 11.20 -10.31 -0.12 -7.94 16 18 C 0.21 2.96 7.64 -155.15 -1.19 1.77 16 19 N -0.42 -6.19 2.95 -102.72 -0.30 -6.49 16 20 C 0.14 1.68 3.28 -67.82 -0.22 1.46 16 21 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 22 C -0.17 -2.38 8.08 37.16 0.30 -2.08 16 23 C -0.13 -1.10 5.06 -26.51 -0.13 -1.24 16 24 C -0.13 -0.92 5.96 -26.44 -0.16 -1.07 16 25 C -0.03 -0.29 6.33 -27.47 -0.17 -0.47 16 26 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 28 H 0.03 0.74 8.14 -51.92 -0.42 0.31 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.40 7.18 7.77 -40.82 -0.32 6.87 16 31 H 0.18 2.43 7.72 -52.49 -0.41 2.02 16 32 H 0.06 0.68 7.81 -51.93 -0.41 0.28 16 33 H 0.11 1.83 5.32 -51.93 -0.28 1.56 16 34 H 0.06 0.92 7.61 -51.93 -0.40 0.53 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -31.89 313.16 -7.63 -39.52 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.71 Total: 6.25 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.63 Total: -2.23 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.07 Total: -53.89 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.06 Total: -11.71 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.14 Total: 17.33 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.89 -7.63 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593436380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.433 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds