Wall clock time and date at job start Mon Mar 30 2020 02:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47524 * 2 1 4 4 C 1.50699 * 109.47115 * 119.99968 * 2 1 3 5 5 H 1.08000 * 119.99664 * 119.99878 * 4 2 1 6 6 C 1.37870 * 120.00081 * 300.00246 * 4 2 1 7 7 N 1.31518 * 120.00126 * 180.02562 * 6 4 2 8 8 Si 1.86807 * 119.99957 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46987 * 90.00370 * 8 6 4 10 10 H 1.48498 * 109.47153 * 209.99782 * 8 6 4 11 11 H 1.48494 * 109.47068 * 330.00414 * 8 6 4 12 12 N 1.46496 * 109.47324 * 240.00233 * 2 1 3 13 13 C 1.34776 * 120.00291 * 84.99668 * 12 2 1 14 14 O 1.21676 * 119.99816 * 5.02695 * 13 12 2 15 15 C 1.46771 * 120.00339 * 185.02054 * 13 12 2 16 16 C 1.36828 * 126.90942 * 15.72981 * 15 13 12 17 17 N 1.33451 * 107.83510 * 179.97438 * 16 15 13 18 18 C 1.30560 * 109.68520 * 359.97438 * 17 16 15 19 19 N 1.35054 * 108.93028 * 359.95554 * 18 17 16 20 20 C 1.46447 * 124.85078 * 179.75850 * 19 18 17 21 21 H 1.08994 * 109.58733 * 102.99936 * 20 19 18 22 22 C 1.53002 * 109.57636 * 223.27148 * 20 19 18 23 23 C 1.53271 * 108.92345 * 343.13449 * 20 19 18 24 24 C 1.53154 * 109.44051 * 50.17154 * 23 20 19 25 25 C 1.51112 * 127.09370 * 180.02562 * 18 17 16 26 26 H 1.08997 * 109.47289 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47087 * 300.00197 * 1 2 3 28 28 H 1.09010 * 109.46808 * 60.00004 * 1 2 3 29 29 H 0.97000 * 119.99823 * 179.97438 * 7 6 4 30 30 H 0.97004 * 120.00239 * 265.00437 * 12 2 1 31 31 H 1.08000 * 126.08680 * 0.02650 * 16 15 13 32 32 H 1.09005 * 109.46626 * 147.47089 * 22 20 19 33 33 H 1.08996 * 109.46614 * 267.46448 * 22 20 19 34 34 H 1.08990 * 109.47556 * 27.46954 * 22 20 19 35 35 H 1.09000 * 109.47487 * 170.16671 * 23 20 19 36 36 H 1.09006 * 109.47540 * 290.17931 * 23 20 19 37 37 H 1.09000 * 109.51393 * 50.58746 * 24 23 20 38 38 H 1.09002 * 109.51095 * 170.73985 * 24 23 20 39 39 H 1.08991 * 109.70929 * 44.28246 * 25 18 17 40 40 H 1.09006 * 109.70628 * 283.65766 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6257 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9770 1.9953 3.9070 11 1 0.8490 2.1772 1.4922 12 7 2.0183 -0.6905 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.9456 1.1813 -2.3910 15 6 2.5302 -0.7328 -3.5805 16 6 2.5014 -2.0854 -3.7853 17 7 2.9272 -2.3198 -5.0281 18 6 3.2204 -1.1899 -5.6130 19 7 2.9876 -0.1769 -4.7507 20 6 3.2046 1.2408 -5.0470 21 1 2.2478 1.7227 -5.2476 22 6 3.8787 1.9171 -3.8515 23 6 4.1073 1.3584 -6.2800 24 6 3.5546 0.4753 -7.4026 25 6 3.7362 -0.9992 -7.0205 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.9039 -0.5274 4.4375 30 1 2.2490 -1.6317 -1.1527 31 1 2.1887 -2.8307 -3.0689 32 1 4.5354 2.7115 -4.2063 33 1 3.1172 2.3404 -3.1967 34 1 4.4639 1.1812 -3.3002 35 1 4.1339 2.3959 -6.6133 36 1 5.1158 1.0329 -6.0245 37 1 2.4948 0.6873 -7.5443 38 1 4.0945 0.6809 -8.3269 39 1 3.1713 -1.6291 -7.7075 40 1 4.7930 -1.2630 -7.0636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593436380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:54 Heat of formation + Delta-G solvation = -0.787732 kcal Electronic energy + Delta-G solvation = -22113.026481 eV Core-core repulsion = 18927.666732 eV Total energy + Delta-G solvation = -3185.359749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.53895 -40.39803 -38.07757 -36.89922 -34.62286 -34.43666 -32.22948 -31.75846 -29.94820 -27.95987 -27.24189 -24.69068 -23.93127 -22.96044 -22.50704 -21.12268 -20.07718 -19.36561 -18.26786 -17.42181 -17.14794 -16.66768 -16.13905 -16.10514 -15.54905 -15.45411 -15.14414 -14.91655 -14.82650 -14.31146 -14.14100 -13.94257 -13.72504 -13.50674 -13.25567 -12.99259 -12.79581 -12.59182 -12.15182 -12.04822 -11.99853 -11.64805 -11.63914 -11.34596 -11.30128 -10.88825 -10.75855 -10.70876 -9.93828 -9.44016 -8.38359 -6.45112 0.30733 1.27955 1.35593 1.44895 1.48454 1.78573 2.25789 2.29773 2.44687 2.97735 3.25411 3.49927 3.62069 3.66312 3.85315 4.05998 4.16990 4.30123 4.36017 4.42945 4.46127 4.52954 4.58966 4.67515 4.71720 4.87541 4.90507 4.95806 4.96358 5.06178 5.16936 5.21344 5.28623 5.33611 5.43745 5.48968 5.64250 6.11232 6.12152 6.55558 6.73267 6.89440 7.16279 7.32879 8.77017 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032381 B = 0.004570 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.485740 B = 6125.820318 C = 6566.664409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.247 3.753 3 H 0.029 0.971 4 C -0.535 4.535 5 H 0.055 0.945 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.940 3.060 9 H -0.259 1.259 10 H -0.292 1.292 11 H -0.260 1.260 12 N -0.687 5.687 13 C 0.582 3.418 14 O -0.575 6.575 15 C -0.096 4.096 16 C 0.029 3.971 17 N -0.519 5.519 18 C 0.226 3.774 19 N -0.422 5.422 20 C 0.129 3.871 21 H 0.089 0.911 22 C -0.165 4.165 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.035 4.035 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.271 0.729 30 H 0.406 0.594 31 H 0.192 0.808 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.032 0.968 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.854 3.883 -23.464 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.142 3.858 3 H 0.047 0.953 4 C -0.573 4.573 5 H 0.073 0.927 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.767 3.233 9 H -0.184 1.184 10 H -0.219 1.219 11 H -0.185 1.185 12 N -0.335 5.335 13 C 0.370 3.630 14 O -0.458 6.458 15 C -0.214 4.214 16 C -0.125 4.125 17 N -0.238 5.238 18 C -0.037 4.037 19 N -0.104 5.104 20 C 0.027 3.973 21 H 0.107 0.893 22 C -0.222 4.222 23 C -0.163 4.163 24 C -0.158 4.158 25 C -0.074 4.074 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.242 0.758 31 H 0.209 0.791 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.135 0.865 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.788 4.151 -23.639 24.162 hybrid contribution -0.527 0.633 1.632 1.828 sum 2.261 4.784 -22.007 22.634 Atomic orbital electron populations 1.22356 0.97532 1.01880 0.99562 1.18810 0.91259 0.93310 0.82380 0.95318 1.21216 1.32534 1.13671 0.89910 0.92694 1.25556 0.96799 0.99410 0.95198 1.69981 1.46583 1.41952 0.98692 0.85984 0.79754 0.80215 0.77307 1.18434 1.21948 1.18470 1.45727 1.64999 1.14386 1.08418 1.17059 0.77424 0.86012 0.82537 1.90616 1.53627 1.15026 1.86498 1.20556 1.15960 0.94516 0.90325 1.23001 1.01908 0.92557 0.95052 1.69938 1.19677 1.26698 1.07510 1.24471 1.01024 0.81718 0.96465 1.45584 1.45907 1.09214 1.09669 1.21882 1.01150 0.76481 0.97763 0.89321 1.22401 1.01424 1.00868 0.97549 1.22115 0.98391 1.03738 0.92010 1.21745 1.02733 0.91820 0.99487 1.20579 1.02893 0.99187 0.84716 0.91562 0.93761 0.93530 0.91993 0.75801 0.79121 0.88768 0.90549 0.94914 0.86519 0.90341 0.91323 0.86321 0.87105 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.72 8.96 71.98 0.65 -6.08 16 2 C 0.25 11.75 2.19 44.24 0.10 11.85 16 3 H 0.03 1.51 6.57 -2.39 -0.02 1.49 16 4 C -0.54 -29.35 9.31 25.60 0.24 -29.11 16 5 H 0.05 3.23 7.98 -2.91 -0.02 3.21 16 6 C 0.03 1.71 5.45 84.65 0.46 2.17 16 7 N -0.93 -56.05 13.96 21.45 0.30 -55.76 16 8 Si 0.94 44.34 24.37 68.60 1.67 46.02 16 9 H -0.26 -11.44 6.87 99.48 0.68 -10.75 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.26 -12.09 6.53 99.48 0.65 -11.44 16 12 N -0.69 -28.17 5.03 -450.01 -2.27 -30.44 16 13 C 0.58 23.06 7.16 86.47 0.62 23.68 16 14 O -0.58 -25.06 12.34 -4.27 -0.05 -25.11 16 15 C -0.10 -3.29 6.45 40.17 0.26 -3.03 16 16 C 0.03 0.91 11.37 84.12 0.96 1.87 16 17 N -0.52 -15.88 11.20 -186.55 -2.09 -17.97 16 18 C 0.23 5.81 7.64 138.24 1.06 6.87 16 19 N -0.42 -12.12 2.95 -478.91 -1.41 -13.53 16 20 C 0.13 3.00 3.28 45.09 0.15 3.14 16 21 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 22 C -0.17 -4.50 8.08 71.98 0.58 -3.92 16 23 C -0.13 -1.64 5.06 30.74 0.16 -1.48 16 24 C -0.12 -1.20 5.96 30.78 0.18 -1.02 16 25 C -0.04 -0.51 6.33 30.11 0.19 -0.32 16 26 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.04 1.94 3.27 -2.39 -0.01 1.94 16 28 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.41 15.09 7.77 -92.71 -0.72 14.37 16 31 H 0.19 5.20 7.72 -2.91 -0.02 5.18 16 32 H 0.09 1.89 7.81 -2.38 -0.02 1.87 16 33 H 0.08 2.62 5.32 -2.39 -0.01 2.61 16 34 H 0.03 1.04 7.61 -2.39 -0.02 1.02 16 35 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.04 8.09 -2.38 -0.02 1.02 16 37 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 38 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -70.79 313.16 2.00 -68.78 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.26 Total: 23.38 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 5.59 Total: 4.62 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -5.47 Total: -117.69 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.11 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.67 Total: 46.02 kcal Total: -70.79 2.00 -68.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593436380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.997 kcal (2) G-P(sol) polarization free energy of solvation -70.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds