Wall clock time and date at job start Mon Mar 30 2020 02:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47215 * 2 1 4 4 C 1.50704 * 109.47437 * 239.99566 * 2 1 3 5 5 H 1.07995 * 120.00046 * 240.00454 * 4 2 1 6 6 C 1.37871 * 119.99720 * 59.99743 * 4 2 1 7 7 N 1.31516 * 120.00474 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00144 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47193 * 59.99450 * 8 6 4 10 10 H 1.48500 * 109.47536 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.46978 * 299.99962 * 8 6 4 12 12 N 1.46503 * 109.47335 * 119.99418 * 2 1 3 13 13 C 1.34770 * 120.00033 * 275.00176 * 12 2 1 14 14 O 1.21681 * 120.00349 * 5.59249 * 13 12 2 15 15 C 1.46773 * 120.00099 * 185.58690 * 13 12 2 16 16 C 1.36831 * 126.90826 * 21.91874 * 15 13 12 17 17 N 1.33452 * 107.83091 * 179.97438 * 16 15 13 18 18 C 1.30552 * 109.68665 * 359.97438 * 17 16 15 19 19 N 1.34872 * 108.98797 * 0.05618 * 18 17 16 20 20 C 1.46442 * 124.99092 * 179.91774 * 19 18 17 21 21 H 1.08997 * 109.58262 * 102.89472 * 20 19 18 22 22 C 1.53007 * 109.57594 * 223.15909 * 20 19 18 23 23 C 1.53269 * 108.82128 * 342.95466 * 20 19 18 24 24 C 1.53158 * 109.43635 * 50.22854 * 23 20 19 25 25 C 1.51114 * 127.09142 * 180.10366 * 18 17 16 26 26 H 1.09001 * 109.47364 * 300.00353 * 1 2 3 27 27 H 1.09000 * 109.47350 * 60.00285 * 1 2 3 28 28 H 1.09003 * 109.46941 * 180.02562 * 1 2 3 29 29 H 0.96996 * 120.00272 * 179.97438 * 7 6 4 30 30 H 0.97002 * 119.99857 * 94.99843 * 12 2 1 31 31 H 1.08003 * 126.08365 * 359.96086 * 16 15 13 32 32 H 1.08997 * 109.47270 * 33.95773 * 22 20 19 33 33 H 1.09004 * 109.46991 * 153.96095 * 22 20 19 34 34 H 1.09003 * 109.47086 * 273.95736 * 22 20 19 35 35 H 1.09003 * 109.47561 * 170.21125 * 23 20 19 36 36 H 1.08997 * 109.47676 * 290.23793 * 23 20 19 37 37 H 1.08994 * 109.51264 * 50.58676 * 24 23 20 38 38 H 1.09001 * 109.50863 * 170.73998 * 24 23 20 39 39 H 1.08994 * 109.71330 * 44.24376 * 25 18 17 40 40 H 1.09002 * 109.70696 * 283.61646 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9435 0.8300 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 1.8260 -2.5205 -4.0075 10 1 1.8270 -0.4202 -5.2204 11 1 3.8065 -1.1210 -4.0081 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0181 2.3571 14 8 1.7628 1.1336 2.4390 15 6 2.7506 -0.6749 3.5227 16 6 3.5862 -1.7584 3.5142 17 7 3.9068 -2.0371 4.7792 18 6 3.3194 -1.1887 5.5790 19 7 2.5902 -0.3249 4.8434 20 6 1.7871 0.7720 5.3878 21 1 2.3137 1.7157 5.2458 22 6 0.4373 0.8248 4.6693 23 6 1.5633 0.5256 6.8839 24 6 2.9057 0.2260 7.5576 25 6 3.4127 -1.1428 7.0865 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7095 1.1615 -3.4845 30 1 2.2490 -1.6317 1.1528 31 1 3.9256 -2.2931 2.6393 32 1 0.1233 -0.1865 4.4111 33 1 -0.3056 1.2797 5.3246 34 1 0.5325 1.4189 3.7604 35 1 1.1199 1.4128 7.3360 36 1 0.8928 -0.3235 7.0161 37 1 3.6288 0.9951 7.2864 38 1 2.7751 0.2132 8.6397 39 1 4.4495 -1.2768 7.3950 40 1 2.7957 -1.9314 7.5172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593436382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:00 Heat of formation + Delta-G solvation = 11.584209 kcal Electronic energy + Delta-G solvation = -22051.532930 eV Core-core repulsion = 18866.709668 eV Total energy + Delta-G solvation = -3184.823262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.32850 -38.62278 -37.11047 -34.92332 -33.59910 -32.46256 -30.63712 -29.94287 -28.27250 -26.88964 -25.27395 -23.20443 -22.87829 -21.90511 -20.83466 -19.46054 -18.98439 -17.79610 -16.25297 -15.85371 -15.35921 -15.16522 -14.82809 -14.67717 -14.60402 -14.22137 -13.85599 -13.39316 -13.15423 -12.89864 -12.47714 -12.32506 -12.15839 -11.70432 -11.59856 -11.35114 -11.32095 -11.12625 -10.99893 -10.85607 -10.53691 -10.36825 -10.24760 -10.04550 -9.50366 -9.17283 -9.07612 -8.56047 -8.25272 -7.91434 -6.14222 -4.23638 1.68389 2.68198 3.05052 3.26216 3.31214 3.32891 3.82370 4.04234 4.18246 4.35578 4.36130 4.47609 4.51629 5.02594 5.08431 5.16989 5.18428 5.24641 5.41533 5.45561 5.50781 5.55109 5.55892 5.72844 5.78570 5.84400 6.04449 6.36161 6.52035 6.74647 6.80528 6.95271 7.10803 7.23181 7.39522 7.52815 7.66794 7.87525 8.10768 8.11327 8.59577 8.74034 9.03341 9.43806 10.91744 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033691 B = 0.004333 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.891218 B = 6460.731031 C = 7100.407013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.691 5.691 13 C 0.577 3.423 14 O -0.551 6.551 15 C -0.062 4.062 16 C 0.020 3.980 17 N -0.494 5.494 18 C 0.211 3.789 19 N -0.418 5.418 20 C 0.137 3.863 21 H 0.094 0.906 22 C -0.180 4.180 23 C -0.132 4.132 24 C -0.127 4.127 25 C -0.032 4.032 26 H 0.015 0.985 27 H 0.091 0.909 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.392 0.608 31 H 0.178 0.822 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 -1.998 18.431 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.167 3.833 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.338 5.338 13 C 0.362 3.638 14 O -0.432 6.432 15 C -0.180 4.180 16 C -0.133 4.133 17 N -0.213 5.213 18 C -0.051 4.051 19 N -0.100 5.100 20 C 0.034 3.966 21 H 0.112 0.888 22 C -0.237 4.237 23 C -0.170 4.170 24 C -0.165 4.165 25 C -0.071 4.071 26 H 0.034 0.966 27 H 0.109 0.891 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.225 0.775 31 H 0.195 0.805 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.251 -1.522 18.583 18.687 hybrid contribution -0.066 -0.314 -1.257 1.297 sum 1.185 -1.836 17.326 17.463 Atomic orbital electron populations 1.22074 0.98274 0.99207 1.00954 1.18797 0.91168 0.93847 0.79495 0.93296 1.21177 1.32632 1.13364 0.90203 0.91939 1.24870 0.94735 0.94931 0.99047 1.69887 1.35791 1.22405 1.24048 0.86489 0.79226 0.79608 0.81682 1.20099 1.21145 1.20107 1.46322 1.64144 1.13546 1.09786 1.16812 0.79042 0.85874 0.82083 1.90598 1.51152 1.17770 1.83729 1.21098 1.09045 1.02564 0.85280 1.22674 0.99400 0.95916 0.95291 1.69863 1.24767 1.25386 1.01255 1.23329 0.95680 0.90258 0.95798 1.45340 1.35178 1.24193 1.05287 1.21616 0.93163 0.88560 0.93229 0.88761 1.22586 0.93513 1.03934 1.03697 1.22061 0.98271 1.03595 0.93048 1.21720 0.96963 0.96868 1.00988 1.20212 1.03614 0.98267 0.84991 0.96553 0.89072 0.95430 0.92490 0.77502 0.80466 0.92523 0.91570 0.86958 0.89273 0.90625 0.91048 0.89951 0.88663 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.27 6.73 2.52 -69.08 -0.17 6.55 16 3 H 0.05 1.41 7.66 -51.93 -0.40 1.01 16 4 C -0.54 -14.03 8.73 -34.44 -0.30 -14.33 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.69 -14.54 5.03 -56.21 -0.28 -14.83 16 13 C 0.58 11.85 7.09 -12.81 -0.09 11.75 16 14 O -0.55 -12.55 12.72 5.21 0.07 -12.48 16 15 C -0.06 -1.11 6.54 -82.35 -0.54 -1.65 16 16 C 0.02 0.34 11.39 -17.36 -0.20 0.14 16 17 N -0.49 -8.13 11.20 -10.35 -0.12 -8.25 16 18 C 0.21 3.04 7.63 -155.33 -1.19 1.86 16 19 N -0.42 -6.47 2.96 -102.72 -0.30 -6.77 16 20 C 0.14 1.77 3.27 -67.82 -0.22 1.55 16 21 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 22 C -0.18 -2.56 8.18 37.16 0.30 -2.25 16 23 C -0.13 -1.16 5.12 -26.51 -0.14 -1.30 16 24 C -0.13 -0.98 5.96 -26.45 -0.16 -1.14 16 25 C -0.03 -0.30 6.33 -27.48 -0.17 -0.48 16 26 H 0.02 0.37 8.07 -51.93 -0.42 -0.05 16 27 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.39 7.31 7.99 -40.82 -0.33 6.98 16 31 H 0.18 2.58 7.91 -52.48 -0.42 2.16 16 32 H 0.06 0.87 8.00 -51.93 -0.42 0.46 16 33 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 34 H 0.11 1.99 5.00 -51.93 -0.26 1.73 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 321.13 15.07 4.84 4.84 Total: -1.00 -30.84 321.13 -8.69 -39.53 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.88 Total: 7.26 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.62 Total: -0.82 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.08 Total: -53.82 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.84 -8.69 -39.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593436382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.112 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds