Wall clock time and date at job start Mon Mar 30 2020 02:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47215 * 2 1 4 4 C 1.50704 * 109.47437 * 239.99566 * 2 1 3 5 5 H 1.07995 * 120.00046 * 240.00454 * 4 2 1 6 6 C 1.37871 * 119.99720 * 59.99743 * 4 2 1 7 7 N 1.31516 * 120.00474 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00144 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47193 * 59.99450 * 8 6 4 10 10 H 1.48500 * 109.47536 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.46978 * 299.99962 * 8 6 4 12 12 N 1.46503 * 109.47335 * 119.99418 * 2 1 3 13 13 C 1.34770 * 120.00033 * 275.00176 * 12 2 1 14 14 O 1.21681 * 120.00349 * 5.59249 * 13 12 2 15 15 C 1.46773 * 120.00099 * 185.58690 * 13 12 2 16 16 C 1.36831 * 126.90826 * 21.91874 * 15 13 12 17 17 N 1.33452 * 107.83091 * 179.97438 * 16 15 13 18 18 C 1.30552 * 109.68665 * 359.97438 * 17 16 15 19 19 N 1.34872 * 108.98797 * 0.05618 * 18 17 16 20 20 C 1.46442 * 124.99092 * 179.91774 * 19 18 17 21 21 H 1.08997 * 109.58262 * 102.89472 * 20 19 18 22 22 C 1.53007 * 109.57594 * 223.15909 * 20 19 18 23 23 C 1.53269 * 108.82128 * 342.95466 * 20 19 18 24 24 C 1.53158 * 109.43635 * 50.22854 * 23 20 19 25 25 C 1.51114 * 127.09142 * 180.10366 * 18 17 16 26 26 H 1.09001 * 109.47364 * 300.00353 * 1 2 3 27 27 H 1.09000 * 109.47350 * 60.00285 * 1 2 3 28 28 H 1.09003 * 109.46941 * 180.02562 * 1 2 3 29 29 H 0.96996 * 120.00272 * 179.97438 * 7 6 4 30 30 H 0.97002 * 119.99857 * 94.99843 * 12 2 1 31 31 H 1.08003 * 126.08365 * 359.96086 * 16 15 13 32 32 H 1.08997 * 109.47270 * 33.95773 * 22 20 19 33 33 H 1.09004 * 109.46991 * 153.96095 * 22 20 19 34 34 H 1.09003 * 109.47086 * 273.95736 * 22 20 19 35 35 H 1.09003 * 109.47561 * 170.21125 * 23 20 19 36 36 H 1.08997 * 109.47676 * 290.23793 * 23 20 19 37 37 H 1.08994 * 109.51264 * 50.58676 * 24 23 20 38 38 H 1.09001 * 109.50863 * 170.73998 * 24 23 20 39 39 H 1.08994 * 109.71330 * 44.24376 * 25 18 17 40 40 H 1.09002 * 109.70696 * 283.61646 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9435 0.8300 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 1.8260 -2.5205 -4.0075 10 1 1.8270 -0.4202 -5.2204 11 1 3.8065 -1.1210 -4.0081 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0181 2.3571 14 8 1.7628 1.1336 2.4390 15 6 2.7506 -0.6749 3.5227 16 6 3.5862 -1.7584 3.5142 17 7 3.9068 -2.0371 4.7792 18 6 3.3194 -1.1887 5.5790 19 7 2.5902 -0.3249 4.8434 20 6 1.7871 0.7720 5.3878 21 1 2.3137 1.7157 5.2458 22 6 0.4373 0.8248 4.6693 23 6 1.5633 0.5256 6.8839 24 6 2.9057 0.2260 7.5576 25 6 3.4127 -1.1428 7.0865 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7095 1.1615 -3.4845 30 1 2.2490 -1.6317 1.1528 31 1 3.9256 -2.2931 2.6393 32 1 0.1233 -0.1865 4.4111 33 1 -0.3056 1.2797 5.3246 34 1 0.5325 1.4189 3.7604 35 1 1.1199 1.4128 7.3360 36 1 0.8928 -0.3235 7.0161 37 1 3.6288 0.9951 7.2864 38 1 2.7751 0.2132 8.6397 39 1 4.4495 -1.2768 7.3950 40 1 2.7957 -1.9314 7.5172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593436382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:00 Heat of formation + Delta-G solvation = -7.885706 kcal Electronic energy + Delta-G solvation = -22052.377209 eV Core-core repulsion = 18866.709668 eV Total energy + Delta-G solvation = -3185.667540 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.52396 -40.30465 -38.06590 -36.76819 -34.60788 -34.37300 -31.76471 -31.59271 -29.70315 -27.93494 -27.34189 -24.57940 -23.92538 -22.95473 -22.52535 -21.06123 -20.07251 -19.27493 -17.93164 -17.31892 -16.97107 -16.62200 -16.16515 -16.06632 -15.54273 -15.43736 -15.08060 -14.79158 -14.45408 -14.29726 -14.01083 -13.76706 -13.28127 -13.25602 -13.03531 -12.82433 -12.72794 -12.56556 -12.28723 -12.16566 -12.04015 -12.00250 -11.64213 -11.36424 -11.13950 -10.77596 -10.70057 -10.56513 -9.83225 -9.42426 -8.18368 -6.35734 0.35148 1.45327 1.47633 1.50860 1.55985 1.80528 2.30086 2.36600 2.60659 3.12437 3.26415 3.50757 3.64985 3.65775 3.90429 4.06416 4.17646 4.30013 4.38606 4.46029 4.58594 4.70199 4.72643 4.86777 4.89583 4.92311 4.95593 5.05300 5.06337 5.17473 5.28298 5.29107 5.40983 5.49626 5.60003 5.67214 5.88579 6.07228 6.12870 6.69777 6.80422 6.93444 7.28496 7.44148 8.87804 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033691 B = 0.004333 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.891218 B = 6460.731031 C = 7100.407013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.277 3.723 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.074 0.926 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.690 5.690 13 C 0.578 3.422 14 O -0.580 6.580 15 C -0.096 4.096 16 C 0.028 3.972 17 N -0.519 5.519 18 C 0.225 3.775 19 N -0.423 5.423 20 C 0.129 3.871 21 H 0.084 0.916 22 C -0.172 4.172 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.034 4.034 26 H 0.014 0.986 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.404 0.596 31 H 0.192 0.808 32 H 0.038 0.962 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.820 -3.366 20.723 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.174 3.826 3 H 0.021 0.979 4 C -0.588 4.588 5 H 0.092 0.908 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.189 1.189 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.338 5.338 13 C 0.365 3.635 14 O -0.463 6.463 15 C -0.213 4.213 16 C -0.126 4.126 17 N -0.238 5.238 18 C -0.038 4.038 19 N -0.104 5.104 20 C 0.027 3.973 21 H 0.102 0.898 22 C -0.229 4.229 23 C -0.161 4.161 24 C -0.158 4.158 25 C -0.073 4.073 26 H 0.033 0.967 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.239 0.761 31 H 0.208 0.792 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.855 -2.904 20.902 21.184 hybrid contribution -0.243 0.146 -1.869 1.891 sum 1.611 -2.758 19.032 19.299 Atomic orbital electron populations 1.21882 0.98065 0.99358 0.99737 1.18393 0.91256 0.91842 0.81095 0.97949 1.21504 1.32837 1.13734 0.90706 0.90830 1.25757 0.94774 0.95545 1.02184 1.70033 1.36844 1.23809 1.24734 0.85399 0.78665 0.78712 0.77579 1.18926 1.21088 1.19604 1.46025 1.64655 1.14014 1.09089 1.17128 0.78291 0.85527 0.82577 1.90606 1.52269 1.19119 1.84275 1.20680 1.11030 1.03972 0.85643 1.22975 0.98256 0.95120 0.96225 1.69934 1.26037 1.26603 1.01190 1.24429 0.93156 0.88371 0.97801 1.45571 1.35543 1.24857 1.04460 1.21864 0.91714 0.87653 0.96065 0.89792 1.22433 0.95466 1.02167 1.02864 1.22095 0.99423 1.05123 0.89487 1.21747 0.95778 0.95347 1.02974 1.20574 1.05241 1.00243 0.81241 0.96692 0.91248 0.94396 0.92474 0.76060 0.79155 0.94283 0.88407 0.90988 0.86592 0.90095 0.91564 0.86187 0.87154 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.71 9.26 71.98 0.67 -6.04 16 2 C 0.28 14.48 2.52 44.24 0.11 14.59 16 3 H 0.00 0.16 7.66 -2.39 -0.02 0.14 16 4 C -0.55 -29.23 8.73 25.60 0.22 -29.01 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.92 -52.30 11.32 21.45 0.24 -52.06 16 8 Si 0.97 42.07 29.54 68.60 2.03 44.09 16 9 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 12 N -0.69 -30.06 5.03 -449.99 -2.26 -32.33 16 13 C 0.58 24.76 7.09 86.48 0.61 25.38 16 14 O -0.58 -28.01 12.72 -4.29 -0.05 -28.07 16 15 C -0.10 -3.48 6.54 40.15 0.26 -3.21 16 16 C 0.03 0.93 11.39 84.12 0.96 1.88 16 17 N -0.52 -16.38 11.20 -186.67 -2.09 -18.47 16 18 C 0.22 6.05 7.63 138.30 1.06 7.10 16 19 N -0.42 -12.83 2.96 -478.91 -1.42 -14.25 16 20 C 0.13 3.22 3.27 45.09 0.15 3.37 16 21 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 22 C -0.17 -4.93 8.18 71.98 0.59 -4.34 16 23 C -0.12 -1.75 5.12 30.74 0.16 -1.60 16 24 C -0.12 -1.34 5.96 30.78 0.18 -1.15 16 25 C -0.03 -0.52 6.33 30.11 0.19 -0.33 16 26 H 0.01 0.71 8.07 -2.39 -0.02 0.69 16 27 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.40 15.35 7.99 -92.71 -0.74 14.61 16 31 H 0.19 5.47 7.91 -2.91 -0.02 5.45 16 32 H 0.04 1.22 8.00 -2.39 -0.02 1.21 16 33 H 0.10 2.07 7.91 -2.39 -0.02 2.06 16 34 H 0.07 2.70 5.00 -2.39 -0.01 2.69 16 35 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 37 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 38 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -69.75 321.13 2.36 -67.40 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.31 Total: 25.64 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 5.61 Total: 8.04 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -5.53 Total: -117.10 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.05 Total: -28.07 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -69.75 2.36 -67.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593436382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.509 kcal (2) G-P(sol) polarization free energy of solvation -69.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds