Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99865 * 2 1 4 4 N 1.46490 * 109.47314 * 125.00184 * 3 2 1 5 5 C 1.46497 * 120.00322 * 270.00006 * 4 3 2 6 6 C 1.50707 * 109.47162 * 269.99844 * 5 4 3 7 7 H 1.07998 * 119.99576 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99982 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47241 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47303 * 119.99759 * 10 8 6 13 13 H 1.48495 * 109.47340 * 239.99921 * 10 8 6 14 14 C 1.34780 * 120.00111 * 89.99439 * 4 3 2 15 15 O 1.21280 * 120.00423 * 179.97438 * 14 4 3 16 16 C 1.50701 * 119.99795 * 0.02562 * 14 4 3 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 4 18 18 H 1.09004 * 109.47346 * 305.00026 * 17 16 14 19 19 C 1.53004 * 109.47236 * 64.99766 * 17 16 14 20 20 N 1.46500 * 109.47520 * 184.99880 * 17 16 14 21 21 C 1.36878 * 126.39977 * 119.71093 * 20 17 16 22 22 C 1.34666 * 106.81807 * 179.84613 * 21 20 17 23 23 N 1.34122 * 108.02175 * 0.42307 * 22 21 20 24 24 C 1.30499 * 109.25528 * 359.72890 * 23 22 21 25 25 H 1.07993 * 120.00154 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99624 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00094 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.47431 * 4.99991 * 3 2 1 29 29 H 1.09002 * 109.47019 * 245.00223 * 3 2 1 30 30 H 1.09000 * 109.47018 * 29.99405 * 5 4 3 31 31 H 1.09000 * 109.47828 * 149.99700 * 5 4 3 32 32 H 0.97001 * 119.99961 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 4 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 4 35 35 H 1.09004 * 109.46741 * 59.99889 * 19 17 16 36 36 H 1.09000 * 109.47403 * 180.02562 * 19 17 16 37 37 H 1.09001 * 109.46917 * 300.00567 * 19 17 16 38 38 H 1.08006 * 126.58977 * 359.97438 * 21 20 17 39 39 H 1.08006 * 125.98725 * 180.12166 * 22 21 20 40 40 H 1.08003 * 125.64917 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5590 1.8650 2.4248 6 6 2.8444 3.3437 2.4803 7 1 3.3041 3.8369 1.6367 8 6 2.5186 4.0668 3.6081 9 7 1.9584 3.4661 4.6353 10 14 2.8717 5.8998 3.6767 11 1 3.5006 6.3308 2.4023 12 1 1.6011 6.6415 3.8778 13 1 3.7947 6.1843 4.8046 14 6 4.2497 0.8662 0.9823 15 8 5.0201 0.8888 1.9187 16 6 4.6972 0.3183 -0.3484 17 6 6.1536 -0.1394 -0.2478 18 1 6.7695 0.6848 0.1122 19 6 6.2529 -1.3140 0.7277 20 7 6.6256 -0.5608 -1.5691 21 6 7.6694 -0.0192 -2.2695 22 6 7.7599 -0.7040 -3.4256 23 7 6.7917 -1.6321 -3.4350 24 6 6.1083 -1.5522 -2.3261 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.4889 1.6967 2.5459 31 1 3.0991 1.3604 3.2259 32 1 1.7288 3.9749 5.4286 33 1 4.0680 -0.5285 -0.6228 34 1 4.6125 1.0952 -1.1083 35 1 5.6370 -2.1382 0.3677 36 1 7.2906 -1.6398 0.7997 37 1 5.9018 -1.0005 1.7108 38 1 8.3007 0.7986 -1.9546 39 1 8.4822 -0.5323 -4.2100 40 1 5.2678 -2.1755 -2.0585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593722427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = 46.643114 kcal Electronic energy + Delta-G solvation = -21547.317293 eV Core-core repulsion = 18364.014300 eV Total energy + Delta-G solvation = -3183.302993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.09446 -39.46371 -36.18724 -35.31746 -33.28319 -32.18817 -30.96235 -29.30049 -28.62620 -27.05419 -25.49713 -23.66833 -22.46973 -21.33234 -20.38354 -19.96966 -18.45437 -17.47439 -16.60005 -16.10074 -15.70872 -15.36235 -15.03747 -14.74526 -14.46985 -14.07810 -13.87433 -13.54186 -13.46691 -13.16888 -12.82607 -12.53603 -12.38110 -11.85999 -11.67329 -11.47245 -11.43135 -11.23974 -11.07162 -10.95186 -10.69072 -10.26876 -9.97920 -9.71901 -9.64537 -9.27908 -9.09723 -8.52537 -8.51355 -7.83441 -6.12417 -4.17617 2.07144 2.35357 2.72043 3.17064 3.18156 3.24095 3.32295 3.35886 3.87178 4.37160 4.47121 4.68984 4.73864 4.80410 4.97180 5.05900 5.20090 5.23206 5.30414 5.37582 5.44497 5.45733 5.56235 5.65759 5.77240 5.81469 5.93127 6.09229 6.22272 6.35005 6.70128 6.73266 6.80686 6.96162 7.18803 7.33458 7.41402 7.83225 8.07067 8.13549 8.23731 8.76567 8.92073 9.47896 10.95719 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018661 B = 0.004575 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.122670 B = 6119.117343 C = 6883.263732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.170 4.170 3 C 0.134 3.866 4 N -0.588 5.588 5 C 0.247 3.753 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.512 3.488 15 O -0.538 6.538 16 C -0.152 4.152 17 C 0.147 3.853 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.450 5.450 21 C -0.054 4.054 22 C -0.037 4.037 23 N -0.500 5.500 24 C 0.180 3.820 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.172 0.828 39 H 0.166 0.834 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 -7.961 -11.985 14.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.190 4.190 3 C 0.010 3.990 4 N -0.319 5.319 5 C 0.128 3.872 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.297 3.703 15 O -0.416 6.416 16 C -0.193 4.193 17 C 0.044 3.956 18 H 0.128 0.872 19 C -0.222 4.222 20 N -0.132 5.132 21 C -0.187 4.187 22 C -0.185 4.185 23 N -0.219 5.219 24 C -0.102 4.102 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.189 0.811 39 H 0.184 0.816 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.805 -8.403 -11.764 14.949 hybrid contribution 0.157 1.644 0.715 1.800 sum 3.962 -6.759 -11.049 13.545 Atomic orbital electron populations 1.23840 0.95848 1.01874 1.00107 1.23379 0.96426 0.98841 1.00330 1.20618 0.93193 0.95555 0.89595 1.48219 1.10273 1.59602 1.13763 1.19315 0.95519 0.93843 0.78517 1.21443 1.40711 0.93254 1.01315 0.92433 1.24926 0.94970 0.98787 0.95315 1.69939 1.41880 1.36145 1.05216 0.86451 0.77976 0.84901 0.78146 1.19823 1.20910 1.20837 1.19915 0.82645 0.78833 0.88884 1.90661 1.52399 1.56596 1.41945 1.22074 0.95812 1.02860 0.98569 1.21232 0.95378 0.99514 0.79431 0.87213 1.22285 1.02488 0.96248 1.01199 1.45868 1.24666 1.26652 1.16017 1.22796 0.96046 1.04304 0.95582 1.22253 1.01015 0.96981 0.98288 1.70280 1.07774 1.23285 1.20533 1.24827 1.02039 0.94620 0.88719 0.88676 0.88230 0.87815 0.89287 0.90822 0.94863 0.93760 0.92700 0.88738 0.88685 0.92434 0.92170 0.87891 0.81102 0.81642 0.78424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 14.32 29.01 0.42 -1.74 16 2 C -0.17 -2.22 9.74 -36.03 -0.35 -2.57 16 3 C 0.13 2.01 5.65 -5.20 -0.03 1.98 16 4 N -0.59 -11.39 2.44 -176.44 -0.43 -11.82 16 5 C 0.25 6.12 5.16 -5.19 -0.03 6.09 16 6 C -0.53 -14.37 9.39 -34.44 -0.32 -14.70 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 10 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 11 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.51 9.33 7.39 -10.98 -0.08 9.25 16 15 O -0.54 -11.80 13.55 5.56 0.08 -11.73 16 16 C -0.15 -1.96 3.73 -27.88 -0.10 -2.06 16 17 C 0.15 1.82 2.70 -67.93 -0.18 1.63 16 18 H 0.11 1.47 7.90 -51.93 -0.41 1.06 16 19 C -0.16 -2.00 8.98 37.16 0.33 -1.66 16 20 N -0.45 -5.32 2.62 -111.46 -0.29 -5.61 16 21 C -0.05 -0.61 11.54 -16.56 -0.19 -0.80 16 22 C -0.04 -0.45 11.87 -17.82 -0.21 -0.66 16 23 N -0.50 -6.93 11.25 -14.67 -0.16 -7.09 16 24 C 0.18 2.16 11.65 -90.38 -1.05 1.11 16 25 H 0.09 0.99 8.06 -52.49 -0.42 0.56 16 26 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 27 H 0.10 1.23 7.83 -52.49 -0.41 0.82 16 28 H 0.09 1.42 7.72 -51.93 -0.40 1.01 16 29 H 0.07 0.92 6.44 -51.93 -0.33 0.59 16 30 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.09 1.02 7.71 -51.93 -0.40 0.62 16 34 H 0.09 1.17 7.40 -51.93 -0.38 0.79 16 35 H 0.06 0.60 7.95 -51.93 -0.41 0.19 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 1.52 5.95 -51.93 -0.31 1.21 16 38 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 40 H 0.20 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -32.26 340.31 -7.81 -40.07 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.94 Total: 2.39 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.90 Total: -2.51 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.15 Total: -49.61 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.26 -7.81 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593722427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.710 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds