Wall clock time and date at job start Mon Mar 30 2020 02:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00118 * 2 1 4 4 N 1.46496 * 109.46833 * 125.00393 * 3 2 1 5 5 C 1.46505 * 119.99891 * 269.99639 * 4 3 2 6 6 C 1.50694 * 109.47403 * 270.00227 * 5 4 3 7 7 H 1.08005 * 120.00188 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00420 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00601 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99607 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47162 * 90.00672 * 10 8 6 12 12 H 1.48507 * 109.46932 * 210.00223 * 10 8 6 13 13 H 1.48493 * 109.47177 * 330.00003 * 10 8 6 14 14 C 1.34779 * 120.00193 * 90.00576 * 4 3 2 15 15 O 1.21276 * 120.00264 * 180.02562 * 14 4 3 16 16 C 1.50700 * 119.99616 * 359.97438 * 14 4 3 17 17 C 1.53008 * 109.46781 * 180.02562 * 16 14 4 18 18 H 1.08996 * 109.47216 * 55.00115 * 17 16 14 19 19 C 1.53005 * 109.46912 * 295.00279 * 17 16 14 20 20 N 1.46500 * 109.46921 * 175.00576 * 17 16 14 21 21 C 1.36885 * 126.39286 * 239.99693 * 20 17 16 22 22 C 1.34665 * 106.81493 * 179.97438 * 21 20 17 23 23 N 1.34129 * 108.02445 * 0.02562 * 22 21 20 24 24 C 1.30498 * 109.25189 * 359.97438 * 23 22 21 25 25 H 1.08002 * 120.00231 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99764 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.99764 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46921 * 5.00163 * 3 2 1 29 29 H 1.09003 * 109.47165 * 245.00525 * 3 2 1 30 30 H 1.08994 * 109.46819 * 30.00804 * 5 4 3 31 31 H 1.09001 * 109.46417 * 150.00309 * 5 4 3 32 32 H 0.96998 * 120.00251 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.47037 * 60.00964 * 16 14 4 34 34 H 1.08993 * 109.47581 * 300.00233 * 16 14 4 35 35 H 1.09000 * 109.46506 * 180.02562 * 19 17 16 36 36 H 1.08996 * 109.47046 * 299.99941 * 19 17 16 37 37 H 1.08991 * 109.47042 * 60.00040 * 19 17 16 38 38 H 1.07999 * 126.59054 * 359.73997 * 21 20 17 39 39 H 1.08008 * 125.98738 * 179.97438 * 22 21 20 40 40 H 1.08006 * 125.64605 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 2.5590 1.8648 2.4249 6 6 2.8444 3.3434 2.4805 7 1 3.3042 3.8368 1.6369 8 6 2.5196 4.0663 3.6086 9 7 2.7683 5.3568 3.6570 10 14 1.7250 3.2129 5.0680 11 1 2.7810 2.7218 5.9894 12 1 0.8490 4.1733 5.7862 13 1 0.9133 2.0656 4.5887 14 6 4.2498 0.8661 0.9823 15 8 5.0198 0.8877 1.9190 16 6 4.6969 0.3174 -0.3482 17 6 6.1531 -0.1412 -0.2473 18 1 6.2541 -0.8526 0.5723 19 6 7.0520 1.0691 0.0143 20 7 6.5511 -0.7827 -1.5028 21 6 6.9859 -2.0719 -1.6539 22 6 7.2424 -2.2454 -2.9645 23 7 6.9722 -1.0935 -3.5963 24 6 6.5575 -0.2129 -2.7271 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.4889 1.6965 2.5459 31 1 3.0991 1.3601 3.2258 32 1 2.5394 5.8655 4.4506 33 1 4.6120 1.0939 -1.1084 34 1 4.0678 -0.5295 -0.6220 35 1 8.0894 0.7424 0.0857 36 1 6.9510 1.7805 -0.8053 37 1 6.7558 1.5464 0.9483 38 1 7.1044 -2.8071 -0.8718 39 1 7.6033 -3.1528 -3.4258 40 1 6.2679 0.8035 -2.9499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593722428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:44 Heat of formation + Delta-G solvation = 51.334295 kcal Electronic energy + Delta-G solvation = -21591.831464 eV Core-core repulsion = 18408.731896 eV Total energy + Delta-G solvation = -3183.099568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.11056 -39.57667 -36.28060 -35.37451 -33.29177 -32.24838 -31.01511 -29.38684 -28.90311 -27.35010 -25.62190 -23.60984 -22.19629 -21.34746 -20.37198 -20.06181 -18.47701 -17.53482 -17.00337 -16.19529 -15.84549 -15.43056 -15.10929 -14.58332 -14.52403 -14.12903 -13.84608 -13.76199 -13.39736 -13.14650 -12.86687 -12.73951 -12.37742 -11.92343 -11.86203 -11.75634 -11.50162 -11.30366 -11.14496 -11.01517 -10.61028 -10.23174 -9.98756 -9.67005 -9.65670 -9.37191 -9.20874 -8.66821 -8.54129 -7.91429 -6.16716 -4.16394 2.05187 2.25859 2.68872 3.09087 3.16537 3.23139 3.29272 3.31118 3.74760 4.32267 4.44880 4.68328 4.69880 4.75049 4.91973 5.00532 5.13949 5.17553 5.24034 5.32851 5.40644 5.46812 5.53121 5.63413 5.76971 5.83928 5.85384 6.01860 6.26716 6.37295 6.57835 6.61714 6.71570 6.73939 6.82957 7.16976 7.19275 7.51387 8.04286 8.06248 8.36430 8.72675 8.86073 9.43109 10.96393 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.004599 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.268876 B = 6086.260832 C = 6815.844732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 C 0.134 3.866 4 N -0.584 5.584 5 C 0.217 3.783 6 C -0.531 4.531 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.874 3.126 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.515 3.485 15 O -0.537 6.537 16 C -0.152 4.152 17 C 0.148 3.852 18 H 0.108 0.892 19 C -0.167 4.167 20 N -0.450 5.450 21 C -0.056 4.056 22 C -0.037 4.037 23 N -0.500 5.500 24 C 0.182 3.818 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.031 0.969 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.105 0.895 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.668 -13.014 -9.775 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.191 4.191 3 C 0.011 3.989 4 N -0.314 5.314 5 C 0.097 3.903 6 C -0.570 4.570 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.191 1.191 14 C 0.300 3.700 15 O -0.415 6.415 16 C -0.193 4.193 17 C 0.046 3.954 18 H 0.126 0.874 19 C -0.224 4.224 20 N -0.132 5.132 21 C -0.189 4.189 22 C -0.185 4.185 23 N -0.218 5.218 24 C -0.100 4.100 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.188 0.812 39 H 0.183 0.817 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.096 -12.602 -9.837 16.124 hybrid contribution -0.642 -0.474 1.645 1.828 sum 1.453 -13.076 -8.192 15.499 Atomic orbital electron populations 1.23866 0.95839 1.01954 1.00054 1.23407 0.96457 0.98906 1.00371 1.20644 0.93194 0.95532 0.89548 1.47892 1.10554 1.59804 1.13161 1.19686 0.95016 0.95236 0.80371 1.21288 1.41493 0.91033 1.03152 0.90698 1.24836 0.95182 0.94704 0.98116 1.69887 1.47566 1.06590 1.29317 0.86878 0.79916 0.79708 0.83367 1.19882 1.21000 1.19060 1.19934 0.82364 0.78557 0.89095 1.90661 1.52154 1.56712 1.41936 1.22063 0.95906 1.02891 0.98398 1.21223 0.93827 0.96924 0.83464 0.87396 1.22307 0.98848 0.96294 1.04991 1.45871 1.47789 1.10684 1.08897 1.22765 1.08801 0.87535 0.99840 1.22258 1.07606 0.97768 0.90847 1.70295 1.17785 1.01124 1.32639 1.24877 1.04728 1.00475 0.79926 0.88651 0.88108 0.87816 0.88999 0.90409 0.95134 0.94499 0.92473 0.88370 0.88723 0.92193 0.92224 0.87638 0.81176 0.81662 0.78302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 14.32 29.01 0.42 -1.64 16 2 C -0.17 -2.15 9.74 -36.03 -0.35 -2.50 16 3 C 0.13 1.94 5.65 -5.20 -0.03 1.91 16 4 N -0.58 -10.91 2.44 -176.44 -0.43 -11.34 16 5 C 0.22 5.01 4.23 -5.19 -0.02 4.99 16 6 C -0.53 -14.53 9.94 -34.45 -0.34 -14.87 16 7 H 0.07 2.24 8.06 -52.48 -0.42 1.82 16 8 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 10 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 14 C 0.51 9.11 7.39 -10.98 -0.08 9.03 16 15 O -0.54 -11.43 13.55 5.56 0.08 -11.35 16 16 C -0.15 -1.90 3.73 -27.88 -0.10 -2.00 16 17 C 0.15 1.80 2.70 -67.92 -0.18 1.61 16 18 H 0.11 1.34 7.89 -51.93 -0.41 0.93 16 19 C -0.17 -2.15 8.98 37.16 0.33 -1.82 16 20 N -0.45 -5.23 2.62 -111.45 -0.29 -5.52 16 21 C -0.06 -0.61 11.54 -16.56 -0.19 -0.80 16 22 C -0.04 -0.43 11.87 -17.81 -0.21 -0.65 16 23 N -0.50 -6.91 11.25 -14.66 -0.16 -7.07 16 24 C 0.18 2.21 11.65 -90.38 -1.05 1.15 16 25 H 0.10 0.94 8.06 -52.49 -0.42 0.51 16 26 H 0.10 1.13 7.84 -52.48 -0.41 0.72 16 27 H 0.10 1.21 7.83 -52.48 -0.41 0.80 16 28 H 0.09 1.41 7.72 -51.93 -0.40 1.01 16 29 H 0.08 0.93 6.44 -51.93 -0.33 0.60 16 30 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 31 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.10 1.10 7.34 -51.93 -0.38 0.71 16 34 H 0.09 1.06 7.77 -51.93 -0.40 0.65 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.70 7.95 -51.93 -0.41 0.29 16 37 H 0.11 1.69 5.95 -51.93 -0.31 1.38 16 38 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 40 H 0.20 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 336.70 15.07 5.07 5.07 Total: -1.00 -32.94 336.70 -7.45 -40.39 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.90 Total: 3.18 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.92 Total: -3.59 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.11 Total: -49.94 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.94 -7.45 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593722428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.726 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds