Wall clock time and date at job start Mon Mar 30 2020 02:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00118 * 2 1 4 4 N 1.46496 * 109.46833 * 125.00393 * 3 2 1 5 5 C 1.46505 * 119.99891 * 269.99639 * 4 3 2 6 6 C 1.50694 * 109.47403 * 270.00227 * 5 4 3 7 7 H 1.08005 * 120.00188 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00420 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00601 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99607 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47162 * 90.00672 * 10 8 6 12 12 H 1.48507 * 109.46932 * 210.00223 * 10 8 6 13 13 H 1.48493 * 109.47177 * 330.00003 * 10 8 6 14 14 C 1.34779 * 120.00193 * 90.00576 * 4 3 2 15 15 O 1.21276 * 120.00264 * 180.02562 * 14 4 3 16 16 C 1.50700 * 119.99616 * 359.97438 * 14 4 3 17 17 C 1.53008 * 109.46781 * 180.02562 * 16 14 4 18 18 H 1.08996 * 109.47216 * 55.00115 * 17 16 14 19 19 C 1.53005 * 109.46912 * 295.00279 * 17 16 14 20 20 N 1.46500 * 109.46921 * 175.00576 * 17 16 14 21 21 C 1.36885 * 126.39286 * 239.99693 * 20 17 16 22 22 C 1.34665 * 106.81493 * 179.97438 * 21 20 17 23 23 N 1.34129 * 108.02445 * 0.02562 * 22 21 20 24 24 C 1.30498 * 109.25189 * 359.97438 * 23 22 21 25 25 H 1.08002 * 120.00231 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99764 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.99764 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46921 * 5.00163 * 3 2 1 29 29 H 1.09003 * 109.47165 * 245.00525 * 3 2 1 30 30 H 1.08994 * 109.46819 * 30.00804 * 5 4 3 31 31 H 1.09001 * 109.46417 * 150.00309 * 5 4 3 32 32 H 0.96998 * 120.00251 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.47037 * 60.00964 * 16 14 4 34 34 H 1.08993 * 109.47581 * 300.00233 * 16 14 4 35 35 H 1.09000 * 109.46506 * 180.02562 * 19 17 16 36 36 H 1.08996 * 109.47046 * 299.99941 * 19 17 16 37 37 H 1.08991 * 109.47042 * 60.00040 * 19 17 16 38 38 H 1.07999 * 126.59054 * 359.73997 * 21 20 17 39 39 H 1.08008 * 125.98738 * 179.97438 * 22 21 20 40 40 H 1.08006 * 125.64605 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 2.5590 1.8648 2.4249 6 6 2.8444 3.3434 2.4805 7 1 3.3042 3.8368 1.6369 8 6 2.5196 4.0663 3.6086 9 7 2.7683 5.3568 3.6570 10 14 1.7250 3.2129 5.0680 11 1 2.7810 2.7218 5.9894 12 1 0.8490 4.1733 5.7862 13 1 0.9133 2.0656 4.5887 14 6 4.2498 0.8661 0.9823 15 8 5.0198 0.8877 1.9190 16 6 4.6969 0.3174 -0.3482 17 6 6.1531 -0.1412 -0.2473 18 1 6.2541 -0.8526 0.5723 19 6 7.0520 1.0691 0.0143 20 7 6.5511 -0.7827 -1.5028 21 6 6.9859 -2.0719 -1.6539 22 6 7.2424 -2.2454 -2.9645 23 7 6.9722 -1.0935 -3.5963 24 6 6.5575 -0.2129 -2.7271 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.4889 1.6965 2.5459 31 1 3.0991 1.3601 3.2258 32 1 2.5394 5.8655 4.4506 33 1 4.6120 1.0939 -1.1084 34 1 4.0678 -0.5295 -0.6220 35 1 8.0894 0.7424 0.0857 36 1 6.9510 1.7805 -0.8053 37 1 6.7558 1.5464 0.9483 38 1 7.1044 -2.8071 -0.8718 39 1 7.6033 -3.1528 -3.4258 40 1 6.2679 0.8035 -2.9499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593722428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:43 Heat of formation + Delta-G solvation = 32.156720 kcal Electronic energy + Delta-G solvation = -21592.663066 eV Core-core repulsion = 18408.731896 eV Total energy + Delta-G solvation = -3183.931171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.00974 -40.95754 -37.54752 -36.51243 -35.04451 -33.77107 -32.07976 -30.67935 -30.03232 -28.67153 -26.89695 -24.93167 -23.70520 -22.23512 -21.42086 -21.02544 -19.78581 -19.09032 -18.59176 -17.44632 -17.19334 -16.68084 -16.22061 -15.89787 -15.64088 -15.60837 -14.78148 -14.76362 -14.62436 -14.34317 -14.22613 -14.00193 -13.83135 -13.55180 -13.19001 -12.98062 -12.74637 -12.58734 -12.42516 -12.32109 -12.17125 -11.95618 -11.73327 -10.91616 -10.83204 -10.72632 -10.56207 -10.33839 -9.46831 -9.40339 -8.33685 -6.38436 1.17596 1.29266 1.34177 1.35877 1.44346 1.66703 1.78372 2.27040 2.30467 2.45481 3.01147 3.43171 3.59673 3.72914 3.90051 4.01593 4.04574 4.13639 4.23060 4.34520 4.47692 4.50102 4.62251 4.72242 4.76598 4.78611 4.86561 4.87611 4.93829 5.05679 5.20895 5.42786 5.45819 5.51079 5.70515 5.87672 5.89914 6.22812 6.28524 6.62221 6.64660 7.18105 7.21003 7.35857 8.82880 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.004599 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.268876 B = 6086.260832 C = 6815.844732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.183 4.183 3 C 0.131 3.869 4 N -0.593 5.593 5 C 0.228 3.772 6 C -0.533 4.533 7 H 0.033 0.967 8 C 0.014 3.986 9 N -0.944 5.944 10 Si 0.942 3.058 11 H -0.275 1.275 12 H -0.277 1.277 13 H -0.240 1.240 14 C 0.508 3.492 15 O -0.579 6.579 16 C -0.136 4.136 17 C 0.159 3.841 18 H 0.106 0.894 19 C -0.162 4.162 20 N -0.449 5.449 21 C -0.054 4.054 22 C -0.052 4.052 23 N -0.532 5.532 24 C 0.176 3.824 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.043 0.957 31 H 0.021 0.979 32 H 0.268 0.732 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.196 0.804 39 H 0.184 0.816 40 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 -15.374 -10.430 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.202 4.202 3 C 0.009 3.991 4 N -0.323 5.323 5 C 0.106 3.894 6 C -0.572 4.572 7 H 0.052 0.948 8 C -0.184 4.184 9 N -0.584 5.584 10 Si 0.765 3.235 11 H -0.201 1.201 12 H -0.203 1.203 13 H -0.163 1.163 14 C 0.296 3.704 15 O -0.460 6.460 16 C -0.176 4.176 17 C 0.056 3.944 18 H 0.124 0.876 19 C -0.220 4.220 20 N -0.132 5.132 21 C -0.187 4.187 22 C -0.199 4.199 23 N -0.251 5.251 24 C -0.106 4.106 25 H 0.135 0.865 26 H 0.117 0.883 27 H 0.135 0.865 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.213 0.787 39 H 0.201 0.799 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.058 -14.995 -10.547 18.363 hybrid contribution -0.277 0.301 1.756 1.803 sum 0.781 -14.694 -8.790 17.140 Atomic orbital electron populations 1.24084 0.95618 1.02944 0.98074 1.23298 0.96728 0.98110 1.02083 1.20851 0.92799 0.96462 0.89013 1.47944 1.11873 1.59659 1.12798 1.19278 0.95348 0.92187 0.82623 1.21541 1.40449 0.93396 1.01793 0.94845 1.25774 0.95942 0.95287 1.01400 1.70037 1.49441 1.08450 1.30481 0.85797 0.79123 0.79358 0.79191 1.20106 1.20279 1.16341 1.20774 0.81441 0.77634 0.90501 1.90646 1.53148 1.58295 1.43908 1.21972 0.96371 1.03973 0.95285 1.21004 0.93239 0.96461 0.83715 0.87577 1.22199 0.99401 0.96854 1.03561 1.45802 1.47994 1.10984 1.08389 1.23211 1.07706 0.87537 1.00289 1.22667 1.07839 0.98043 0.91372 1.70291 1.18876 1.02209 1.33727 1.25291 1.04403 1.01130 0.79811 0.86536 0.88288 0.86523 0.90477 0.87802 0.93866 0.96087 0.92327 0.86533 0.86356 0.91582 0.91217 0.91043 0.78702 0.79868 0.76456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 14.32 67.78 0.97 -2.39 16 2 C -0.18 -4.06 9.74 25.65 0.25 -3.81 16 3 C 0.13 3.56 5.65 85.63 0.48 4.05 16 4 N -0.59 -21.74 2.44 -830.52 -2.03 -23.77 16 5 C 0.23 10.47 4.23 85.63 0.36 10.83 16 6 C -0.53 -29.94 9.94 25.60 0.25 -29.69 16 7 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 8 C 0.01 0.81 5.47 84.65 0.46 1.28 16 9 N -0.94 -58.17 13.96 21.44 0.30 -57.87 16 10 Si 0.94 43.16 27.47 68.60 1.88 45.04 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 14 C 0.51 17.67 7.39 87.66 0.65 18.31 16 15 O -0.58 -25.02 13.55 -3.02 -0.04 -25.07 16 16 C -0.14 -3.09 3.73 29.85 0.11 -2.98 16 17 C 0.16 3.56 2.70 45.00 0.12 3.68 16 18 H 0.11 2.47 7.89 -2.39 -0.02 2.45 16 19 C -0.16 -4.09 8.98 71.98 0.65 -3.45 16 20 N -0.45 -9.33 2.62 -506.53 -1.33 -10.66 16 21 C -0.05 -1.05 11.54 83.08 0.96 -0.09 16 22 C -0.05 -1.13 11.87 83.52 0.99 -0.13 16 23 N -0.53 -13.72 11.25 -200.31 -2.25 -15.97 16 24 C 0.18 3.86 11.65 180.26 2.10 5.96 16 25 H 0.12 1.84 8.06 -2.91 -0.02 1.82 16 26 H 0.10 1.99 7.84 -2.91 -0.02 1.97 16 27 H 0.12 2.30 7.83 -2.91 -0.02 2.28 16 28 H 0.08 2.31 7.72 -2.39 -0.02 2.29 16 29 H 0.10 2.23 6.44 -2.39 -0.02 2.21 16 30 H 0.04 1.88 7.13 -2.39 -0.02 1.86 16 31 H 0.02 1.04 6.85 -2.39 -0.02 1.02 16 32 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.12 2.27 7.34 -2.39 -0.02 2.25 16 34 H 0.12 2.21 7.77 -2.39 -0.02 2.19 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.57 7.95 -2.39 -0.02 1.55 16 37 H 0.07 2.35 5.95 -2.39 -0.01 2.34 16 38 H 0.20 2.62 8.06 -2.91 -0.02 2.59 16 39 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.22 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -73.74 336.70 5.85 -67.88 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.96 Total: 18.84 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 8.36 Total: 1.57 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -5.31 Total: -108.27 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.04 Total: -25.07 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.04 kcal Total: -73.74 5.85 -67.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593722428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.040 kcal (2) G-P(sol) polarization free energy of solvation -73.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds