Wall clock time and date at job start Mon Mar 30 2020 02:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47308 * 2 1 4 4 C 1.50701 * 109.47156 * 239.99501 * 2 1 3 5 5 C 1.38220 * 120.01107 * 344.29966 * 4 2 1 6 6 C 1.38221 * 120.02217 * 179.97438 * 5 4 2 7 7 C 1.38262 * 120.05443 * 359.97438 * 6 5 4 8 8 C 1.38179 * 120.02580 * 0.04353 * 7 6 5 9 9 C 1.38435 * 120.01200 * 164.02192 * 4 2 1 10 10 F 1.35098 * 120.03009 * 0.02562 * 9 4 2 11 11 N 1.46899 * 109.46939 * 119.99965 * 2 1 3 12 12 C 1.46848 * 111.00321 * 55.42518 * 11 2 1 13 13 C 1.53036 * 109.52324 * 174.15896 * 12 11 2 14 14 C 1.53119 * 109.27811 * 59.18173 * 13 12 11 15 15 C 1.53113 * 109.16195 * 302.34485 * 14 13 12 16 16 H 1.09005 * 109.53278 * 297.69210 * 15 14 13 17 17 C 1.50696 * 109.50684 * 177.59749 * 15 14 13 18 18 H 1.08009 * 119.99961 * 240.19650 * 17 15 14 19 19 C 1.37875 * 120.00079 * 60.18811 * 17 15 14 20 20 N 1.31513 * 119.99984 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 120.00125 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46940 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47319 * 120.00406 * 21 19 17 24 24 H 1.48503 * 109.47462 * 240.00630 * 21 19 17 25 25 C 1.46848 * 111.00178 * 291.21362 * 11 2 1 26 26 H 1.08993 * 109.47616 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47438 * 300.00258 * 1 2 3 28 28 H 1.08999 * 109.47282 * 59.99924 * 1 2 3 29 29 H 1.07994 * 119.98623 * 0.02562 * 5 4 2 30 30 H 1.08001 * 119.97188 * 180.02562 * 6 5 4 31 31 H 1.08006 * 119.98982 * 180.02562 * 7 6 5 32 32 H 1.07997 * 120.01282 * 179.97438 * 8 7 6 33 33 H 1.08994 * 109.45994 * 294.18187 * 12 11 2 34 34 H 1.09000 * 109.46080 * 54.14548 * 12 11 2 35 35 H 1.08992 * 109.50611 * 299.23843 * 13 12 11 36 36 H 1.09000 * 109.53593 * 179.14099 * 13 12 11 37 37 H 1.08997 * 109.52075 * 182.43660 * 14 13 12 38 38 H 1.09006 * 109.52226 * 62.24554 * 14 13 12 39 39 H 0.97003 * 120.00026 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.46412 * 305.86019 * 25 11 2 41 41 H 1.09000 * 109.45820 * 65.82507 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.1764 -1.5090 -1.9655 6 6 1.6367 -2.1604 -3.0943 7 6 2.9534 -2.0137 -3.4899 8 6 3.8110 -1.2162 -2.7564 9 6 3.3496 -0.5591 -1.6281 10 9 4.1858 0.2251 -0.9133 11 7 2.0195 -0.6925 1.1994 12 6 1.4615 -2.0478 1.2894 13 6 2.1027 -2.7879 2.4654 14 6 1.8281 -2.0159 3.7589 15 6 2.3763 -0.5930 3.6209 16 1 3.4566 -0.6306 3.4806 17 6 2.0580 0.1919 4.8673 18 1 1.4531 1.0844 4.8037 19 6 2.5389 -0.2293 6.0889 20 7 3.2758 -1.3158 6.1663 21 14 2.1438 0.7433 7.6341 22 1 1.3037 1.9155 7.2798 23 1 1.4070 -0.1227 8.5892 24 1 3.4062 1.2101 8.2616 25 6 1.7273 0.0836 2.4114 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.1474 -1.6233 -1.6582 30 1 0.9672 -2.7838 -3.6683 31 1 3.3120 -2.5228 -4.3724 32 1 4.8395 -1.1021 -3.0653 33 1 0.3840 -1.9875 1.4421 34 1 1.6674 -2.5874 0.3649 35 1 3.1785 -2.8608 2.3065 36 1 1.6776 -3.7887 2.5417 37 1 2.3196 -2.5164 4.5931 38 1 0.7536 -1.9765 3.9384 39 1 3.6145 -1.6120 7.0257 40 1 2.1261 1.0920 2.3019 41 1 0.6485 0.1339 2.5589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595610782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:00 Heat of formation + Delta-G solvation = -24.934297 kcal Electronic energy + Delta-G solvation = -22170.788642 eV Core-core repulsion = 18964.461857 eV Total energy + Delta-G solvation = -3206.326784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.58350 -39.68113 -37.97565 -34.69844 -32.46122 -30.84004 -30.31065 -29.68344 -28.36886 -24.95861 -24.74111 -22.48070 -22.33351 -21.49190 -19.97136 -18.31420 -17.51742 -16.46963 -16.21192 -15.71532 -15.53226 -14.91854 -14.52790 -14.26017 -14.00222 -13.92361 -13.64293 -13.06913 -12.79946 -12.57485 -12.27057 -12.21362 -11.99006 -11.89952 -11.65945 -11.38566 -11.01490 -10.91694 -10.85985 -10.62125 -10.43795 -10.03659 -9.78384 -9.43455 -9.05692 -8.93311 -8.65689 -8.54565 -8.27098 -7.58711 -5.94082 -4.00080 1.20275 1.22639 3.31929 3.39954 3.43482 3.58382 4.40014 4.42956 4.60119 4.69998 4.77653 4.92615 5.16769 5.33553 5.35747 5.36874 5.41332 5.67503 5.73886 5.88136 5.89332 5.99822 6.06710 6.10324 6.14432 6.24087 6.32767 6.37710 6.41548 6.51632 6.56434 6.77049 6.80096 6.93430 7.01534 7.26346 7.43771 7.70913 7.78733 7.85381 8.13276 8.21682 8.51887 9.04296 9.64075 11.11990 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030424 B = 0.004472 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.094986 B = 6259.756229 C = 6333.107567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.117 3.883 3 H 0.089 0.911 4 C -0.098 4.098 5 C -0.092 4.092 6 C -0.137 4.137 7 C -0.098 4.098 8 C -0.161 4.161 9 C 0.123 3.877 10 F -0.129 7.129 11 N -0.524 5.524 12 C 0.061 3.939 13 C -0.117 4.117 14 C -0.109 4.109 15 C 0.055 3.945 16 H 0.034 0.966 17 C -0.513 4.513 18 H 0.053 0.947 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.068 3.932 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.027 0.973 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.029 0.971 39 H 0.258 0.742 40 H 0.058 0.942 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 -1.856 -18.099 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.008 3.992 3 H 0.107 0.893 4 C -0.099 4.099 5 C -0.110 4.110 6 C -0.155 4.155 7 C -0.116 4.116 8 C -0.180 4.180 9 C 0.103 3.897 10 F -0.107 7.107 11 N -0.248 5.248 12 C -0.067 4.067 13 C -0.155 4.155 14 C -0.147 4.147 15 C 0.036 3.964 16 H 0.052 0.948 17 C -0.552 4.552 18 H 0.072 0.928 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.058 4.058 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.114 -1.962 -17.949 18.323 hybrid contribution -0.900 0.636 1.062 1.531 sum -4.014 -1.327 -16.887 17.408 Atomic orbital electron populations 1.22521 0.97241 1.02304 1.02358 1.20510 0.92682 0.97638 0.88330 0.89346 1.19955 0.92502 0.99841 0.97645 1.21090 0.99927 0.95504 0.94502 1.21129 0.96008 1.00831 0.97528 1.20934 0.93447 0.97881 0.99382 1.21142 1.01140 0.99940 0.95758 1.17550 0.87838 0.93096 0.91201 1.91535 1.70436 1.71582 1.77137 1.62232 1.58341 1.02483 1.01721 1.22055 0.96183 0.89835 0.98623 1.21672 1.00444 0.97236 0.96155 1.21639 0.98857 0.98512 0.95719 1.18662 0.96226 0.91559 0.89923 0.94782 1.21183 1.32163 1.09987 0.91839 0.92829 1.24930 0.95016 0.95059 0.98827 1.69908 1.35090 1.22993 1.24710 0.86587 0.78074 0.80138 0.83471 1.19875 1.21141 1.21055 1.22333 0.97733 0.96469 0.89306 0.91918 0.91628 0.92369 0.85054 0.85755 0.85506 0.85052 0.95528 0.92460 0.92238 0.93659 0.89198 0.95227 0.93157 0.92330 0.95957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 7.30 37.15 0.27 -2.20 16 2 C 0.12 1.82 2.25 -68.87 -0.15 1.67 16 3 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 4 C -0.10 -1.39 4.31 -104.56 -0.45 -1.84 16 5 C -0.09 -1.07 8.31 -39.59 -0.33 -1.40 16 6 C -0.14 -1.37 10.04 -39.58 -0.40 -1.77 16 7 C -0.10 -0.98 10.04 -39.59 -0.40 -1.38 16 8 C -0.16 -1.91 10.03 -39.51 -0.40 -2.31 16 9 C 0.12 1.81 7.25 -39.42 -0.29 1.52 16 10 F -0.13 -2.18 16.74 2.25 0.04 -2.14 16 11 N -0.52 -9.87 4.60 -228.09 -1.05 -10.92 16 12 C 0.06 1.09 4.57 -3.83 -0.02 1.07 16 13 C -0.12 -2.36 6.09 -26.65 -0.16 -2.53 16 14 C -0.11 -2.62 5.03 -26.61 -0.13 -2.75 16 15 C 0.06 1.40 2.26 -91.70 -0.21 1.19 16 16 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.51 -14.19 8.56 -34.44 -0.29 -14.49 16 18 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.64 11.36 55.43 0.63 -25.01 16 21 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.07 1.46 4.33 -3.83 -0.02 1.45 16 26 H 0.06 0.80 5.16 -51.93 -0.27 0.53 16 27 H 0.06 0.94 6.77 -51.93 -0.35 0.59 16 28 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 29 H 0.13 1.36 5.96 -52.49 -0.31 1.05 16 30 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.03 0.47 6.58 -51.93 -0.34 0.12 16 34 H 0.06 0.95 6.47 -51.93 -0.34 0.61 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.06 1.26 8.03 -51.93 -0.42 0.85 16 41 H 0.02 0.47 6.83 -51.93 -0.35 0.12 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -29.23 320.05 -9.68 -38.91 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.04 Total: 0.02 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -3.07 Total: -22.10 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.42 Total: -35.94 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.23 -9.68 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.980 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds