Wall clock time and date at job start Mon Mar 30 2020 02:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47308 * 2 1 4 4 C 1.50701 * 109.47156 * 239.99501 * 2 1 3 5 5 C 1.38220 * 120.01107 * 344.29966 * 4 2 1 6 6 C 1.38221 * 120.02217 * 179.97438 * 5 4 2 7 7 C 1.38262 * 120.05443 * 359.97438 * 6 5 4 8 8 C 1.38179 * 120.02580 * 0.04353 * 7 6 5 9 9 C 1.38435 * 120.01200 * 164.02192 * 4 2 1 10 10 F 1.35098 * 120.03009 * 0.02562 * 9 4 2 11 11 N 1.46899 * 109.46939 * 119.99965 * 2 1 3 12 12 C 1.46848 * 111.00321 * 55.42518 * 11 2 1 13 13 C 1.53036 * 109.52324 * 174.15896 * 12 11 2 14 14 C 1.53119 * 109.27811 * 59.18173 * 13 12 11 15 15 C 1.53113 * 109.16195 * 302.34485 * 14 13 12 16 16 H 1.09005 * 109.53278 * 297.69210 * 15 14 13 17 17 C 1.50696 * 109.50684 * 177.59749 * 15 14 13 18 18 H 1.08009 * 119.99961 * 240.19650 * 17 15 14 19 19 C 1.37875 * 120.00079 * 60.18811 * 17 15 14 20 20 N 1.31513 * 119.99984 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 120.00125 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46940 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47319 * 120.00406 * 21 19 17 24 24 H 1.48503 * 109.47462 * 240.00630 * 21 19 17 25 25 C 1.46848 * 111.00178 * 291.21362 * 11 2 1 26 26 H 1.08993 * 109.47616 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47438 * 300.00258 * 1 2 3 28 28 H 1.08999 * 109.47282 * 59.99924 * 1 2 3 29 29 H 1.07994 * 119.98623 * 0.02562 * 5 4 2 30 30 H 1.08001 * 119.97188 * 180.02562 * 6 5 4 31 31 H 1.08006 * 119.98982 * 180.02562 * 7 6 5 32 32 H 1.07997 * 120.01282 * 179.97438 * 8 7 6 33 33 H 1.08994 * 109.45994 * 294.18187 * 12 11 2 34 34 H 1.09000 * 109.46080 * 54.14548 * 12 11 2 35 35 H 1.08992 * 109.50611 * 299.23843 * 13 12 11 36 36 H 1.09000 * 109.53593 * 179.14099 * 13 12 11 37 37 H 1.08997 * 109.52075 * 182.43660 * 14 13 12 38 38 H 1.09006 * 109.52226 * 62.24554 * 14 13 12 39 39 H 0.97003 * 120.00026 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.46412 * 305.86019 * 25 11 2 41 41 H 1.09000 * 109.45820 * 65.82507 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.1764 -1.5090 -1.9655 6 6 1.6367 -2.1604 -3.0943 7 6 2.9534 -2.0137 -3.4899 8 6 3.8110 -1.2162 -2.7564 9 6 3.3496 -0.5591 -1.6281 10 9 4.1858 0.2251 -0.9133 11 7 2.0195 -0.6925 1.1994 12 6 1.4615 -2.0478 1.2894 13 6 2.1027 -2.7879 2.4654 14 6 1.8281 -2.0159 3.7589 15 6 2.3763 -0.5930 3.6209 16 1 3.4566 -0.6306 3.4806 17 6 2.0580 0.1919 4.8673 18 1 1.4531 1.0844 4.8037 19 6 2.5389 -0.2293 6.0889 20 7 3.2758 -1.3158 6.1663 21 14 2.1438 0.7433 7.6341 22 1 1.3037 1.9155 7.2798 23 1 1.4070 -0.1227 8.5892 24 1 3.4062 1.2101 8.2616 25 6 1.7273 0.0836 2.4114 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.1474 -1.6233 -1.6582 30 1 0.9672 -2.7838 -3.6683 31 1 3.3120 -2.5228 -4.3724 32 1 4.8395 -1.1021 -3.0653 33 1 0.3840 -1.9875 1.4421 34 1 1.6674 -2.5874 0.3649 35 1 3.1785 -2.8608 2.3065 36 1 1.6776 -3.7887 2.5417 37 1 2.3196 -2.5164 4.5931 38 1 0.7536 -1.9765 3.9384 39 1 3.6145 -1.6120 7.0257 40 1 2.1261 1.0920 2.3019 41 1 0.6485 0.1339 2.5589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595610782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:59 Heat of formation + Delta-G solvation = -40.968521 kcal Electronic energy + Delta-G solvation = -22171.483938 eV Core-core repulsion = 18964.461857 eV Total energy + Delta-G solvation = -3207.022081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.73609 -40.87044 -39.26066 -36.29240 -34.29160 -32.13862 -31.52656 -31.24098 -29.52264 -26.93919 -26.00347 -23.83970 -23.47095 -23.04687 -21.31962 -20.01606 -18.59807 -18.35309 -17.25825 -17.07338 -16.70229 -16.43339 -16.11395 -15.63254 -15.35459 -15.01123 -14.87204 -14.74900 -14.40197 -14.00901 -13.81582 -13.43801 -13.20957 -13.06371 -12.95135 -12.82827 -12.71191 -12.61019 -12.49813 -11.92531 -11.85114 -11.74535 -11.58198 -11.38839 -10.86373 -10.67693 -10.39023 -9.85582 -9.52057 -9.05397 -8.08458 -6.22963 0.29020 0.33830 1.39546 1.40948 1.52611 2.42021 2.67149 3.18454 3.21891 3.47214 3.62685 3.83987 4.11759 4.18735 4.22253 4.25303 4.32802 4.41024 4.48330 4.51342 4.62541 4.66439 4.77341 4.83599 4.89095 5.01123 5.05188 5.08050 5.15166 5.19135 5.23020 5.37691 5.37825 5.47760 5.53254 5.55478 5.62976 5.95798 6.04776 6.13372 6.21278 6.36769 6.46126 6.89975 7.45062 8.96605 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030424 B = 0.004472 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.094986 B = 6259.756229 C = 6333.107567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.117 3.883 3 H 0.071 0.929 4 C -0.115 4.115 5 C -0.093 4.093 6 C -0.127 4.127 7 C -0.090 4.090 8 C -0.166 4.166 9 C 0.084 3.916 10 F -0.155 7.155 11 N -0.540 5.540 12 C 0.070 3.930 13 C -0.111 4.111 14 C -0.100 4.100 15 C 0.053 3.947 16 H -0.011 1.011 17 C -0.535 4.535 18 H 0.051 0.949 19 C 0.014 3.986 20 N -0.917 5.917 21 Si 0.956 3.044 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.282 1.282 25 C 0.085 3.915 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.143 0.857 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.027 0.973 39 H 0.260 0.740 40 H 0.047 0.953 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.556 -2.869 -20.364 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.009 3.991 3 H 0.089 0.911 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.144 4.144 7 C -0.108 4.108 8 C -0.184 4.184 9 C 0.064 3.936 10 F -0.134 7.134 11 N -0.264 5.264 12 C -0.058 4.058 13 C -0.149 4.149 14 C -0.138 4.138 15 C 0.035 3.965 16 H 0.007 0.993 17 C -0.573 4.573 18 H 0.070 0.930 19 C -0.185 4.185 20 N -0.556 5.556 21 Si 0.781 3.219 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.207 1.207 25 C -0.042 4.042 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.166 0.834 30 H 0.178 0.822 31 H 0.180 0.820 32 H 0.161 0.839 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.921 -2.972 -20.235 21.036 hybrid contribution -0.291 0.916 1.664 1.922 sum -5.212 -2.056 -18.571 19.398 Atomic orbital electron populations 1.22438 0.95088 1.03147 1.02845 1.20481 0.94341 0.96700 0.87563 0.91127 1.19890 0.92843 1.01320 0.97625 1.21324 1.00272 0.94820 0.94747 1.21573 0.96452 0.99793 0.96615 1.21388 0.93191 0.96507 0.99687 1.21406 1.02293 0.99747 0.94998 1.18034 0.88262 0.94576 0.92680 1.91463 1.71255 1.72613 1.78025 1.62099 1.59613 1.02964 1.01723 1.21985 0.96392 0.89104 0.98295 1.21594 0.99801 0.98393 0.95141 1.21424 0.97896 0.97780 0.96749 1.18575 0.93780 0.92948 0.91238 0.99324 1.21541 1.32351 1.10281 0.93175 0.93025 1.25735 0.94808 0.95999 1.01962 1.70057 1.35801 1.24291 1.25453 0.85547 0.77942 0.78900 0.79493 1.19111 1.20409 1.20744 1.21943 0.97165 0.95796 0.89344 0.90776 0.93072 0.89934 0.83379 0.82209 0.82034 0.83924 0.94335 0.90257 0.94049 0.91070 0.92548 0.95438 0.93088 0.93473 0.95596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.36 7.30 71.98 0.53 -3.83 16 2 C 0.12 3.61 2.25 44.17 0.10 3.71 16 3 H 0.07 2.37 7.93 -2.39 -0.02 2.35 16 4 C -0.12 -3.12 4.31 -19.82 -0.09 -3.20 16 5 C -0.09 -1.85 8.31 22.26 0.19 -1.67 16 6 C -0.13 -1.93 10.04 22.27 0.22 -1.71 16 7 C -0.09 -1.42 10.04 22.26 0.22 -1.20 16 8 C -0.17 -3.64 10.03 22.31 0.22 -3.42 16 9 C 0.08 2.45 7.25 22.37 0.16 2.61 16 10 F -0.15 -5.51 16.74 44.97 0.75 -4.76 16 11 N -0.54 -20.57 4.60 -875.54 -4.03 -24.60 16 12 C 0.07 2.41 4.57 86.33 0.39 2.80 16 13 C -0.11 -4.49 6.09 30.65 0.19 -4.30 16 14 C -0.10 -4.96 5.03 30.67 0.15 -4.81 16 15 C 0.05 2.85 2.26 -11.49 -0.03 2.82 16 16 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 17 C -0.53 -30.64 8.56 25.60 0.22 -30.42 16 18 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 19 C 0.01 0.77 5.30 84.65 0.45 1.22 16 20 N -0.92 -54.75 11.36 21.45 0.24 -54.51 16 21 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 C 0.08 3.77 4.33 86.32 0.37 4.14 16 26 H 0.07 1.65 5.16 -2.39 -0.01 1.64 16 27 H 0.05 1.41 6.77 -2.39 -0.02 1.39 16 28 H 0.08 1.63 8.12 -2.39 -0.02 1.61 16 29 H 0.15 2.40 5.96 -2.91 -0.02 2.38 16 30 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 32 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.04 1.26 6.58 -2.39 -0.02 1.24 16 34 H 0.08 2.43 6.47 -2.39 -0.02 2.41 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.06 3.16 6.17 -2.39 -0.01 3.14 16 38 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.05 2.14 8.03 -2.39 -0.02 2.13 16 41 H 0.03 1.12 6.83 -2.39 -0.02 1.10 16 Total: -1.00 -66.85 320.05 3.31 -63.53 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.01 Total: 10.83 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 3.31 Total: -37.25 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -3.79 Total: -79.11 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.75 Total: -4.76 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -66.85 3.31 -63.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.563 kcal (2) G-P(sol) polarization free energy of solvation -66.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds