Wall clock time and date at job start Mon Mar 30 2020 02:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46665 * 2 1 4 4 C 1.50699 * 109.47192 * 240.00606 * 2 1 3 5 5 C 1.38228 * 120.00852 * 265.25726 * 4 2 1 6 6 C 1.38229 * 120.02156 * 180.29817 * 5 4 2 7 7 C 1.38262 * 120.05298 * 359.71232 * 6 5 4 8 8 C 1.38177 * 120.02678 * 0.02562 * 7 6 5 9 9 C 1.38437 * 120.01912 * 84.99447 * 4 2 1 10 10 F 1.35104 * 120.02166 * 359.97438 * 9 4 2 11 11 N 1.46899 * 109.47455 * 119.99971 * 2 1 3 12 12 C 1.46840 * 111.00040 * 170.79060 * 11 2 1 13 13 C 1.53033 * 109.52585 * 185.84102 * 12 11 2 14 14 C 1.53123 * 109.27756 * 300.81976 * 13 12 11 15 15 C 1.53123 * 109.15832 * 57.65568 * 14 13 12 16 16 H 1.08996 * 109.53520 * 62.30529 * 15 14 13 17 17 C 1.50699 * 109.50113 * 182.40632 * 15 14 13 18 18 H 1.07998 * 120.00270 * 119.80435 * 17 15 14 19 19 C 1.37883 * 119.99849 * 299.79832 * 17 15 14 20 20 N 1.31510 * 120.00003 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99613 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47622 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.46818 * 120.00295 * 21 19 17 24 24 H 1.48498 * 109.46959 * 239.99629 * 21 19 17 25 25 C 1.46847 * 111.00050 * 295.00442 * 11 2 1 26 26 H 1.09005 * 109.46665 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46751 * 299.99481 * 1 2 3 28 28 H 1.08992 * 109.47131 * 60.00209 * 1 2 3 29 29 H 1.07994 * 119.98824 * 0.03535 * 5 4 2 30 30 H 1.08001 * 119.96987 * 179.70237 * 6 5 4 31 31 H 1.08001 * 119.98726 * 180.02562 * 7 6 5 32 32 H 1.07996 * 120.01639 * 180.02562 * 8 7 6 33 33 H 1.09005 * 109.46514 * 305.85568 * 12 11 2 34 34 H 1.09000 * 109.46311 * 65.82162 * 12 11 2 35 35 H 1.08995 * 109.50702 * 180.88235 * 13 12 11 36 36 H 1.08995 * 109.53703 * 60.78095 * 13 12 11 37 37 H 1.08999 * 109.52306 * 297.74884 * 14 13 12 38 38 H 1.09004 * 109.52303 * 177.55559 * 14 13 12 39 39 H 0.96998 * 119.99904 * 179.97438 * 20 19 17 40 40 H 1.09000 * 109.45628 * 294.17367 * 25 11 2 41 41 H 1.08993 * 109.46563 * 54.15350 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 2.3562 -2.0527 -1.1701 6 6 2.8228 -2.7030 -2.2971 7 6 2.9607 -2.0131 -3.4874 8 6 2.6325 -0.6724 -3.5515 9 6 2.1647 -0.0199 -2.4232 10 9 1.8430 1.2908 -2.4848 11 7 2.0198 -0.6925 1.1994 12 6 3.4710 -0.9050 1.1287 13 6 3.9224 -1.7532 2.3198 14 6 3.5560 -1.0334 3.6207 15 6 2.0459 -0.7812 3.6472 16 1 1.5169 -1.7341 3.6354 17 6 1.6848 -0.0207 4.8971 18 1 1.2186 0.9507 4.8226 19 6 1.9496 -0.5650 6.1360 20 7 2.5176 -1.7476 6.2269 21 14 1.5013 0.3774 7.6853 22 1 0.8776 1.6729 7.3137 23 1 0.5416 -0.4207 8.4899 24 1 2.7277 0.6289 8.4839 25 6 1.6489 0.0388 2.4176 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 2.2485 -2.5927 -0.2410 30 1 3.0801 -3.7508 -2.2477 31 1 3.3250 -2.5224 -4.3673 32 1 2.7399 -0.1339 -4.4814 33 1 3.7177 -1.4213 0.2009 34 1 3.9808 0.0581 1.1547 35 1 5.0019 -1.8976 2.2755 36 1 3.4240 -2.7219 2.2871 37 1 4.0852 -0.0819 3.6721 38 1 3.8366 -1.6539 4.4718 39 1 2.7042 -2.1304 7.0984 40 1 2.1673 0.9975 2.4376 41 1 0.5722 0.2079 2.4262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595610783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:02 Heat of formation + Delta-G solvation = -21.683144 kcal Electronic energy + Delta-G solvation = -22071.778033 eV Core-core repulsion = 18865.592229 eV Total energy + Delta-G solvation = -3206.185804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.86472 -39.73758 -37.84318 -34.65299 -32.52925 -30.98434 -30.40938 -29.66944 -28.63134 -24.96802 -24.16287 -22.88870 -22.27436 -21.20701 -20.08565 -18.63693 -17.54762 -16.66213 -16.20961 -15.87367 -15.56814 -14.99244 -14.49698 -14.26066 -14.14175 -13.87261 -13.24967 -13.07422 -12.79014 -12.61886 -12.54986 -12.34333 -12.14194 -11.85384 -11.58754 -11.20604 -11.09917 -10.97187 -10.78499 -10.64541 -10.54726 -10.09162 -9.82636 -9.44689 -9.04927 -8.81333 -8.67564 -8.59140 -8.29340 -7.70404 -5.97000 -4.02804 1.14925 1.22051 3.30389 3.38603 3.42329 3.58480 4.20569 4.35808 4.49993 4.65377 4.81788 4.98982 5.23452 5.33200 5.33407 5.50592 5.52437 5.67031 5.83447 5.85928 5.95776 6.02166 6.04500 6.13318 6.17739 6.28880 6.37415 6.41045 6.42589 6.49967 6.55099 6.72144 6.76952 6.90380 6.99039 7.22293 7.40367 7.65746 7.75716 7.80738 8.09055 8.17942 8.49063 9.01391 9.61567 11.09060 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032179 B = 0.004410 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.920050 B = 6347.686433 C = 6851.876569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.118 3.882 3 H 0.046 0.954 4 C -0.105 4.105 5 C -0.066 4.066 6 C -0.137 4.137 7 C -0.099 4.099 8 C -0.161 4.161 9 C 0.096 3.904 10 F -0.141 7.141 11 N -0.529 5.529 12 C 0.049 3.951 13 C -0.115 4.115 14 C -0.111 4.111 15 C 0.056 3.944 16 H 0.035 0.965 17 C -0.514 4.514 18 H 0.053 0.947 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.066 3.934 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.150 0.850 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.069 0.931 34 H 0.021 0.979 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.029 0.971 38 H 0.090 0.910 39 H 0.259 0.741 40 H 0.019 0.981 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 -0.809 -17.495 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.009 3.991 3 H 0.064 0.936 4 C -0.107 4.107 5 C -0.084 4.084 6 C -0.156 4.156 7 C -0.117 4.117 8 C -0.180 4.180 9 C 0.076 3.924 10 F -0.119 7.119 11 N -0.254 5.254 12 C -0.078 4.078 13 C -0.153 4.153 14 C -0.149 4.149 15 C 0.037 3.963 16 H 0.053 0.947 17 C -0.552 4.552 18 H 0.072 0.928 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.060 4.060 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.167 0.833 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.638 -1.329 -17.332 17.394 hybrid contribution 0.226 1.611 0.780 1.805 sum 0.864 0.283 -16.552 16.577 Atomic orbital electron populations 1.21800 0.93201 1.02782 1.01648 1.20420 0.95974 0.94840 0.87843 0.93617 1.20015 1.01556 0.95235 0.93857 1.21212 0.94979 0.92995 0.99228 1.21272 1.01062 1.00447 0.92770 1.20961 0.99105 0.93349 0.98248 1.21033 1.03448 0.95914 0.97608 1.17594 1.01709 0.78301 0.94764 1.91474 1.90509 1.32964 1.96996 1.62065 1.13113 1.48894 1.01370 1.22322 0.87613 0.98597 0.99293 1.21660 0.98398 0.99307 0.95953 1.21660 0.99003 0.98615 0.95626 1.18658 0.92383 0.95563 0.89664 0.94716 1.21186 1.39596 1.03790 0.90677 0.92824 1.24923 0.95120 0.94884 0.98866 1.69898 1.42759 1.16163 1.23890 0.86586 0.78107 0.80087 0.83495 1.19868 1.21048 1.21123 1.22372 0.99436 0.95028 0.89188 0.91589 0.91467 0.92863 0.83286 0.85437 0.85467 0.85187 0.91259 0.96092 0.93583 0.92109 0.95230 0.89128 0.93143 0.96297 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.09 37.16 0.34 -1.66 16 2 C 0.12 1.88 2.07 -68.86 -0.14 1.74 16 3 H 0.05 0.78 7.78 -51.93 -0.40 0.38 16 4 C -0.11 -1.51 4.26 -104.55 -0.45 -1.95 16 5 C -0.07 -0.87 7.09 -39.59 -0.28 -1.15 16 6 C -0.14 -1.47 10.04 -39.58 -0.40 -1.87 16 7 C -0.10 -0.97 10.04 -39.59 -0.40 -1.37 16 8 C -0.16 -1.79 10.03 -39.51 -0.40 -2.18 16 9 C 0.10 1.30 7.24 -39.42 -0.29 1.01 16 10 F -0.14 -2.02 16.57 2.25 0.04 -1.99 16 11 N -0.53 -9.59 3.78 -228.09 -0.86 -10.45 16 12 C 0.05 0.87 4.56 -3.84 -0.02 0.85 16 13 C -0.12 -2.22 6.09 -26.65 -0.16 -2.38 16 14 C -0.11 -2.61 5.03 -26.60 -0.13 -2.74 16 15 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 16 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 17 C -0.51 -14.00 8.56 -34.44 -0.29 -14.29 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.16 11.36 55.43 0.63 -24.53 16 21 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 C 0.07 1.40 4.51 -3.83 -0.02 1.38 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.01 6.40 -51.93 -0.33 0.68 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.15 2.10 6.69 -52.49 -0.35 1.75 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.07 1.09 4.70 -51.93 -0.24 0.85 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 2.38 6.16 -51.93 -0.32 2.06 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.33 6.18 -51.93 -0.32 1.01 16 LS Contribution 322.03 15.07 4.85 4.85 Total: -1.00 -28.04 322.03 -9.46 -37.51 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.16 Total: 0.22 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -2.94 Total: -21.80 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.23 Total: -34.99 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.04 -9.46 -37.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.823 kcal (2) G-P(sol) polarization free energy of solvation -28.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds